1DDFA

Fas death domain, nmr, minimized average structure
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
127
structure length
127
Chain Sequence
METVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQDTAEQKVQLLRNWHQLHGKKEAYDTLIKDLKKANLCTLAEKIQTIILKDITSDSENSNFRNEIQSLVLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Death domain
molecule keywords FAS
publication title NMR structure and mutagenesis of the Fas (APO-1/CD95) death domain.
pubmed doi rcsb
source organism Homo sapiens
total genus 24
structure length 127
sequence length 127
ec nomenclature
pdb deposition date 1996-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00531 Death Death domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.533.10 Mainly Alpha Orthogonal Bundle Death Domain, Fas Death Domain, Fas 1ddfA00
4M9SA 2L9MA 3LQQA 4A2WA 1E41A 2DBGA 2HM2Q 2NZ7A 3YGSC 4P4HA 4O6XA 3EZQA 4F44A 1WXPA 2OF5H 4O9FA 1DDFA 1PN5A 3YGSP 1C15A 4N1LA 3EZQB 1D2ZB 3KATA 1FADA 2LWDA 2LWEA 3J6JA 2LS7A 4NQKA 2MS7A 4N1JA 4JUPA 2IB1A 4EWIA 4O9LA 1Z6TA 4JQWA 4M9XA 2MN4A 1NGRA 2N00A 1A1WA 4RHWE 1UCPA 2G7RA 1YGOA 2KN6A 2MB9A 4P4HI 4LWDA 2A5YB 2D96A 4IZ7B 2DBFA 2P1HA 4IZ5E 2GF5A 4D8OA 3T6PA 2A9IA 2YU0A 4DWNA 4IZAB 3MOPA 2MS8A 1N3KA 2YVIA 2BBZA 1A1ZA 4N1KA 3MOPK 2N7ZA 3LQRA 4M9ZA 2NSNA 4UZ0A 4QOBA 2F1SA 4FH0A 2BBRA 4F42A 2MPCA 2N97A 2NAQA 3CRDA 2N83A 2O71A 3J63A 3MOPG 4I16A 2YGSA 3QF2A 1CWWA 2M5VA 2N80A 1DGNA 2B1WA 1WH4A 2OF5A 4E9MA 1D2ZA 3CL3A 2DBHA 1WMGA 2DO9A 4O7QA 2DBDA 2VGQA 1ICHA 4RHWA 4A2QA 2KM6A 1E3YA 2L6AA 2N1FA 4ZBWA 1CY5A 2YQFA
chains in the Genus database with same CATH superfamily
4M9SA 2MJMA 2L9MA 3LQQA 4A2WA 1E41A 2DBGA 2HM2Q 2NZ7A 3YGSC 4P4HA 4O6XA 3EZQA 4F44A 1WXPA 2OF5H 4O9FA 1DDFA 1PN5A 3YGSP 1C15A 4N1LA 3EZQB 1D2ZB 3KATA 1FADA 2LWDA 2LWEA 3J6JA 2LS7A 4NQKA 2MS7A 4N1JA 4JUPA 2IB1A 4EWIA 4O9LA 1Z6TA 4JQWA 4M9XA 2MN4A 1NGRA 2N00A 1A1WA 4RHWE 1UCPA 2G7RA 1YGOA 2KN6A 2MB9A 4P4HI 4LWDA 2A5YB 2D96A 4IZ7B 2DBFA 2P1HA 4IZ5E 2GF5A 4D8OA 3T6PA 2A9IA 2YU0A 4DWNA 4IZAB 3MOPA 2MS8A 1N3KA 2YVIA 2BBZA 1A1ZA 4N1KA 3MOPK 2N7ZA 3LQRA 4M9ZA 2NSNA 4UZ0A 4QOBA 2F1SA 4FH0A 2BBRA 4F42A 2MPCA 2XV9A 2N97A 2NAQA 3CRDA 2N83A 2O71A 3J63A 3MOPG 4I16A 2YGSA 3QF2A 1CWWA 2M5VA 2N80A 1DGNA 2B1WA 1WH4A 2OF5A 4E9MA 1D2ZA 3CL3A 2DBHA 1WMGA 2DO9A 4O7QA 2DBDA 2VGQA 1ICHA 4RHWA 4A2QA 2KM6A 1E3YA 2L6AA 2N1FA 4ZBWA 1CY5A 2YQFA
chains in the Genus database with same CATH topology
4M9SA 2MJMA 2L9MA 3LQQA 4A2WA 1E41A 2DBGA 2HM2Q 2NZ7A 3YGSC 4P4HA 4O6XA 3EZQA 4F44A 1WXPA 2OF5H 4O9FA 1DDFA 1PN5A 3YGSP 1C15A 4N1LA 3EZQB 1D2ZB 3KATA 1FADA 2LWDA 2LWEA 3J6JA 2LS7A 4NQKA 2MS7A 4N1JA 4JUPA 2IB1A 4EWIA 4O9LA 1Z6TA 4JQWA 4M9XA 2MN4A 1NGRA 2N00A 1A1WA 4RHWE 1UCPA 2G7RA 1YGOA 2KN6A 2MB9A 4P4HI 4LWDA 2A5YB 2D96A 4IZ7B 2DBFA 2P1HA 4IZ5E 2GF5A 4D8OA 3T6PA 2A9IA 2YU0A 4DWNA 4IZAB 3MOPA 2MS8A 1N3KA 2YVIA 2BBZA 1A1ZA 4N1KA 3MOPK 2N7ZA 3LQRA 4M9ZA 2NSNA 4UZ0A 4QOBA 2F1SA 4FH0A 2BBRA 4F42A 2MPCA 2XV9A 2N97A 2NAQA 3CRDA 2N83A 2O71A 3J63A 3MOPG 4I16A 2YGSA 3QF2A 1CWWA 2M5VA 2N80A 1DGNA 2B1WA 1WH4A 2OF5A 4E9MA 1D2ZA 3CL3A 2DBHA 1WMGA 2DO9A 4O7QA 2DBDA 2VGQA 1ICHA 4RHWA 4A2QA 2KM6A 1E3YA 2L6AA 2N1FA 4ZBWA 1CY5A 2YQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4M9S A;  2L9M A;  3LQQ A;  4A2W A;  1E41 A;  2DBG A;  2HM2 Q;  2NZ7 A;  3YGS C;  4P4H A;  4O6X A;  3EZQ A;  4F44 A;  1WXP A;  2OF5 H;  4O9F A;  1DDF A;  1PN5 A;  3YGS P;  1C15 A;  4N1L A;  3EZQ B;  1D2Z B;  3KAT A;  1FAD A;  2LWD A;  2LWE A;  3J6J A;  2LS7 A;  4NQK A;  2MS7 A;  4N1J A;  4JUP A;  2IB1 A;  4EWI A;  4O9L A;  1Z6T A;  4JQW A;  4M9X A;  2MN4 A;  1NGR A;  2N00 A;  1A1W A;  4RHW E;  1UCP A;  2G7R A;  1YGO A;  2KN6 A;  2MB9 A;  4P4H I;  4LWD A;  2A5Y B;  2D96 A;  4IZ7 B;  2DBF A;  2P1H A;  4IZ5 E;  2GF5 A;  4D8O A;  3T6P A;  2A9I A;  2YU0 A;  4DWN A;  4IZA B;  3MOP A;  2MS8 A;  1N3K A;  2YVI A;  2BBZ A;  1A1Z A;  4N1K A;  3MOP K;  2N7Z A;  3LQR A;  4M9Z A;  2NSN A;  4UZ0 A;  4QOB A;  2F1S A;  4FH0 A;  2BBR A;  4F42 A;  2MPC A;  2N97 A;  2NAQ A;  3CRD A;  2N83 A;  2O71 A;  3J63 A;  3MOP G;  4I16 A;  2YGS A;  3QF2 A;  1CWW A;  2M5V A;  2N80 A;  1DGN A;  2B1W A;  1WH4 A;  2OF5 A;  4E9M A;  1D2Z A;  3CL3 A;  2DBH A;  1WMG A;  2DO9 A;  4O7Q A;  2DBD A;  2VGQ A;  1ICH A;  4RHW A;  4A2Q A;  2KM6 A;  1E3Y A;  2L6A A;  2N1F A;  4ZBW A;  1CY5 A;  2YQF A; 
#chains in the Genus database with same CATH topology
 4M9S A;  2MJM A;  2L9M A;  3LQQ A;  4A2W A;  1E41 A;  2DBG A;  2HM2 Q;  2NZ7 A;  3YGS C;  4P4H A;  4O6X A;  3EZQ A;  4F44 A;  1WXP A;  2OF5 H;  4O9F A;  1DDF A;  1PN5 A;  3YGS P;  1C15 A;  4N1L A;  3EZQ B;  1D2Z B;  3KAT A;  1FAD A;  2LWD A;  2LWE A;  3J6J A;  2LS7 A;  4NQK A;  2MS7 A;  4N1J A;  4JUP A;  2IB1 A;  4EWI A;  4O9L A;  1Z6T A;  4JQW A;  4M9X A;  2MN4 A;  1NGR A;  2N00 A;  1A1W A;  4RHW E;  1UCP A;  2G7R A;  1YGO A;  2KN6 A;  2MB9 A;  4P4H I;  4LWD A;  2A5Y B;  2D96 A;  4IZ7 B;  2DBF A;  2P1H A;  4IZ5 E;  2GF5 A;  4D8O A;  3T6P A;  2A9I A;  2YU0 A;  4DWN A;  4IZA B;  3MOP A;  2MS8 A;  1N3K A;  2YVI A;  2BBZ A;  1A1Z A;  4N1K A;  3MOP K;  2N7Z A;  3LQR A;  4M9Z A;  2NSN A;  4UZ0 A;  4QOB A;  2F1S A;  4FH0 A;  2BBR A;  4F42 A;  2MPC A;  2XV9 A;  2N97 A;  2NAQ A;  3CRD A;  2N83 A;  2O71 A;  3J63 A;  3MOP G;  4I16 A;  2YGS A;  3QF2 A;  1CWW A;  2M5V A;  2N80 A;  1DGN A;  2B1W A;  1WH4 A;  2OF5 A;  4E9M A;  1D2Z A;  3CL3 A;  2DBH A;  1WMG A;  2DO9 A;  4O7Q A;  2DBD A;  2VGQ A;  1ICH A;  4RHW A;  4A2Q A;  2KM6 A;  1E3Y A;  2L6A A;  2N1F A;  4ZBW A;  1CY5 A;  2YQF A; 
#chains in the Genus database with same CATH homology
 4M9S A;  2MJM A;  2L9M A;  3LQQ A;  4A2W A;  1E41 A;  2DBG A;  2HM2 Q;  2NZ7 A;  3YGS C;  4P4H A;  4O6X A;  3EZQ A;  4F44 A;  1WXP A;  2OF5 H;  4O9F A;  1DDF A;  1PN5 A;  3YGS P;  1C15 A;  4N1L A;  3EZQ B;  1D2Z B;  3KAT A;  1FAD A;  2LWD A;  2LWE A;  3J6J A;  2LS7 A;  4NQK A;  2MS7 A;  4N1J A;  4JUP A;  2IB1 A;  4EWI A;  4O9L A;  1Z6T A;  4JQW A;  4M9X A;  2MN4 A;  1NGR A;  2N00 A;  1A1W A;  4RHW E;  1UCP A;  2G7R A;  1YGO A;  2KN6 A;  2MB9 A;  4P4H I;  4LWD A;  2A5Y B;  2D96 A;  4IZ7 B;  2DBF A;  2P1H A;  4IZ5 E;  2GF5 A;  4D8O A;  3T6P A;  2A9I A;  2YU0 A;  4DWN A;  4IZA B;  3MOP A;  2MS8 A;  1N3K A;  2YVI A;  2BBZ A;  1A1Z A;  4N1K A;  3MOP K;  2N7Z A;  3LQR A;  4M9Z A;  2NSN A;  4UZ0 A;  4QOB A;  2F1S A;  4FH0 A;  2BBR A;  4F42 A;  2MPC A;  2XV9 A;  2N97 A;  2NAQ A;  3CRD A;  2N83 A;  2O71 A;  3J63 A;  3MOP G;  4I16 A;  2YGS A;  3QF2 A;  1CWW A;  2M5V A;  2N80 A;  1DGN A;  2B1W A;  1WH4 A;  2OF5 A;  4E9M A;  1D2Z A;  3CL3 A;  2DBH A;  1WMG A;  2DO9 A;  4O7Q A;  2DBD A;  2VGQ A;  1ICH A;  4RHW A;  4A2Q A;  2KM6 A;  1E3Y A;  2L6A A;  2N1F A;  4ZBW A;  1CY5 A;  2YQF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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