1DFAA

Crystal structure of pi-scei in c2 space group
Total Genus 83
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
83
sequence length
454
structure length
405
Chain Sequence
CFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHRAHKSDSSREVPELLKFTCNATHELVVRTPRSVRRLSRTIKGVEYFEVITFEMGQKKAPDGRIVELVKEVSKSYPISEKAYFEWTIEARDLSLLGSHVRKATYQTYAPILYENDHFFDYMQLTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKNTENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDMNGTKHKISYAIYMSGGDVLLNVLSKCAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVHN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PI-SCEI ENDONUCLEASE
publication title Probing the structure of the PI-SceI-DNA complex by affinity cleavage and affinity photocross-linking.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 83
structure length 405
sequence length 454
ec nomenclature ec 7.1.2.2: H(+)-transporting two-sector ATPase.
pdb deposition date 1999-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05203 Hom_end_hint Hom_end-associated Hint
A PF05204 Hom_end Homing endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 1dfaA01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1dfaA02
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1dfaA03
2IN9A 1MI8A 2JMZA 2LWYA 5AK9A 2VBOA 2VBLA 4LOXA 2VS7A 2O7MA 5A0MA 2KEQA 4LQ0A 3MX9A 2QOJZ 2VS8A 2IN8A 3EH8A 4AAEA 4YISA 4YHXA 4UNAA 4E2TA 4EFJA 1U0CA 1G9ZA 1BP7A 2IMZA 3IFJA 1LWSA 2VBJA 2VBOB 1T9JA 2AB5A 2VBLB 1DFAA 4UNBA 5A0MB 2FLDA 5E5OA 2IN0A 4UN7G 3MIPA 1P8KZ 2LCJA 4UN7A 4YITA 4O1SA 1GPPA 2JNQA 4E2UA 5A78A 3KO2A 1N3EA 3R7PA 2DCHX 2XE0A 2VBJB 3HYIA 1T9IA 3UVFA 5K08A 4Z1XA 5AKNA 5A74A 4KL6A 1N3FA 5E67A 4OZ6A 3C0XA 4Z20A 4AAGA 1MOWA 4KL5A 2XE0B 5AKMA 1AF5A 4AADA 2VBNA 4AAFA 1AM2A 3MISA 4AQUA 1R7MA 4UN8G 5I0AA 3MXAA 4UN8A 1AT0A 3OOLA 3HYJA 1LWTA 3QQYA 5AKFA 3C0WA 4UT0A 4Z1ZA 3NZMA 5A77A 5E63A 2EX5A 4AQXA 3MXBA 3FD2A 3IGDA 1B24A 2L8LA 2VBNB 4GIGA 2CW8A 1G9YA 4D6OA 4UNCA 1M5XA 1UM2A 1ZDEA 2LQMA 2I3QA 4O1RA 5A0WA 1VDEA 5E5SA 4AABA 1ZD7A 1EF0A 3MXBB 4D6NA 3OORA 2I3PA 1DQ3A 5A72A 4UN9G 4UN9A 1JVAA 2CW7A 1U0DA 3E54A
chains in the Genus database with same CATH superfamily
2IN9A 1MI8A 2JMZA 2LWYA 5AK9A 2VBOA 2VBLA 4LOXA 2VS7A 2O7MA 5A0MA 2KEQA 4LQ0A 3MX9A 2QOJZ 2VS8A 2IN8A 3EH8A 4AAEA 4YISA 4YHXA 4UNAA 4E2TA 4EFJA 1U0CA 1G9ZA 1BP7A 2IMZA 3IFJA 1LWSA 2VBJA 2VBOB 1T9JA 2AB5A 2VBLB 1DFAA 4UNBA 5A0MB 2FLDA 5E5OA 2IN0A 4UN7G 3MIPA 1P8KZ 2LCJA 4UN7A 4QFQA 4O1SA 4YITA 1GPPA 4KZSA 2JNQA 4LX3A 4E2UA 2F4LA 5A78A 3KO2A 1N3EA 3R7PA 2DCHX 2XE0A 2VBJB 3HYIA 1T9IA 3UVFA 5K08A 4Z1XA 5AKNA 5A74A 4KL6A 1N3FA 5E67A 4OZ6A 3C0XA 4Z20A 4AAGA 1MOWA 4KL5A 2XE0B 5AKMA 1AF5A 4AADA 2VBNA 4AAFA 1AM2A 3MISA 4AQUA 1R7MA 4UN8G 5I0AA 3MXAA 4UN8A 1AT0A 3OOLA 3HYJA 1LWTA 3QQYA 5AKFA 3C0WA 4UT0A 4Z1ZA 3NZMA 5A77A 5E63A 2EX5A 4AQXA 3MXBA 3FD2A 3IGDA 1B24A 2L8LA 2VBNB 4GIGA 2CW8A 1G9YA 4D6OA 4UNCA 1M5XA 1UM2A 1ZDEA 2LQMA 2I3QA 4O1RA 5A0WA 1VDEA 5E5SA 4AABA 1ZD7A 1EF0A 3MXBB 4D6NA 3OORA 2I3PA 1DQ3A 5A72A 4UN9G 4UN9A 1JVAA 2CW7A 1U0DA 3E54A
chains in the Genus database with same CATH topology
2IN9A 1MI8A 2JMZA 2LWYA 5AK9A 2VBOA 2VBLA 4LOXA 2VS7A 2O7MA 5A0MA 2KEQA 4LQ0A 3MX9A 2QOJZ 2VS8A 2IN8A 3EH8A 4AAEA 4YISA 4YHXA 4UNAA 4E2TA 4EFJA 1U0CA 1G9ZA 1BP7A 2IMZA 3IFJA 1LWSA 2VBJA 2VBOB 1T9JA 2AB5A 2VBLB 1DFAA 4UNBA 5A0MB 2FLDA 5E5OA 2IN0A 4UN7G 3MIPA 1P8KZ 2LCJA 4UN7A 4YITA 4O1SA 1GPPA 2JNQA 4E2UA 5A78A 3KO2A 1N3EA 3R7PA 2DCHX 2XE0A 2VBJB 3HYIA 1T9IA 3UVFA 5K08A 4Z1XA 5AKNA 5A74A 4KL6A 1N3FA 5E67A 4OZ6A 3C0XA 4Z20A 4AAGA 1MOWA 4KL5A 2XE0B 5AKMA 1AF5A 4AADA 2VBNA 4AAFA 1AM2A 3MISA 4AQUA 1R7MA 4UN8G 5I0AA 3MXAA 4UN8A 1AT0A 3OOLA 3HYJA 1LWTA 3QQYA 5AKFA 3C0WA 4UT0A 4Z1ZA 3NZMA 5A77A 5E63A 2EX5A 4AQXA 3MXBA 3FD2A 3IGDA 1B24A 2L8LA 2VBNB 4GIGA 2CW8A 1G9YA 4D6OA 4UNCA 1M5XA 1UM2A 1ZDEA 2LQMA 2I3QA 4O1RA 5A0WA 1VDEA 5E5SA 4AABA 1ZD7A 1EF0A 3MXBB 4D6NA 3OORA 2I3PA 1DQ3A 5A72A 4UN9G 4UN9A 1JVAA 2CW7A 1U0DA 3E54A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IN9 A;  1MI8 A;  2JMZ A;  2LWY A;  5AK9 A;  2VBO A;  2VBL A;  4LOX A;  2VS7 A;  2O7M A;  5A0M A;  2KEQ A;  4LQ0 A;  3MX9 A;  2QOJ Z;  2VS8 A;  2IN8 A;  3EH8 A;  4AAE A;  4YIS A;  4YHX A;  4UNA A;  4E2T A;  4EFJ A;  1U0C A;  1G9Z A;  1BP7 A;  2IMZ A;  3IFJ A;  1LWS A;  2VBJ A;  2VBO B;  1T9J A;  2AB5 A;  2VBL B;  1DFA A;  4UNB A;  5A0M B;  2FLD A;  5E5O A;  2IN0 A;  4UN7 G;  3MIP A;  1P8K Z;  2LCJ A;  4UN7 A;  4YIT A;  4O1S A;  1GPP A;  2JNQ A;  4E2U A;  5A78 A;  3KO2 A;  1N3E A;  3R7P A;  2DCH X;  2XE0 A;  2VBJ B;  3HYI A;  1T9I A;  3UVF A;  5K08 A;  4Z1X A;  5AKN A;  5A74 A;  4KL6 A;  1N3F A;  5E67 A;  4OZ6 A;  3C0X A;  4Z20 A;  4AAG A;  1MOW A;  4KL5 A;  2XE0 B;  5AKM A;  1AF5 A;  4AAD A;  2VBN A;  4AAF A;  1AM2 A;  3MIS A;  4AQU A;  1R7M A;  4UN8 G;  5I0A A;  3MXA A;  4UN8 A;  1AT0 A;  3OOL A;  3HYJ A;  1LWT A;  3QQY A;  5AKF A;  3C0W A;  4UT0 A;  4Z1Z A;  3NZM A;  5A77 A;  5E63 A;  2EX5 A;  4AQX A;  3MXB A;  3FD2 A;  3IGD A;  1B24 A;  2L8L A;  2VBN B;  4GIG A;  2CW8 A;  1G9Y A;  4D6O A;  4UNC A;  1M5X A;  1UM2 A;  1ZDE A;  2LQM A;  2I3Q A;  4O1R A;  5A0W A;  1VDE A;  5E5S A;  4AAB A;  1ZD7 A;  1EF0 A;  3MXB B;  4D6N A;  3OOR A;  2I3P A;  1DQ3 A;  5A72 A;  4UN9 G;  4UN9 A;  1JVA A;  2CW7 A;  1U0D A;  3E54 A; 
#chains in the Genus database with same CATH topology
 2IN9 A;  1MI8 A;  2JMZ A;  2LWY A;  5AK9 A;  2VBO A;  2VBL A;  4LOX A;  2VS7 A;  2O7M A;  5A0M A;  2KEQ A;  4LQ0 A;  3MX9 A;  2QOJ Z;  2VS8 A;  2IN8 A;  3EH8 A;  4AAE A;  4YIS A;  4YHX A;  4UNA A;  4E2T A;  4EFJ A;  1U0C A;  1G9Z A;  1BP7 A;  2IMZ A;  3IFJ A;  1LWS A;  2VBJ A;  2VBO B;  1T9J A;  2AB5 A;  2VBL B;  1DFA A;  4UNB A;  5A0M B;  2FLD A;  5E5O A;  2IN0 A;  4UN7 G;  3MIP A;  1P8K Z;  2LCJ A;  4UN7 A;  4QFQ A;  4O1S A;  4YIT A;  1GPP A;  4KZS A;  2JNQ A;  4LX3 A;  4E2U A;  2F4L A;  5A78 A;  3KO2 A;  1N3E A;  3R7P A;  2DCH X;  2XE0 A;  2VBJ B;  3HYI A;  1T9I A;  3UVF A;  5K08 A;  4Z1X A;  5AKN A;  5A74 A;  4KL6 A;  1N3F A;  5E67 A;  4OZ6 A;  3C0X A;  4Z20 A;  4AAG A;  1MOW A;  4KL5 A;  2XE0 B;  5AKM A;  1AF5 A;  4AAD A;  2VBN A;  4AAF A;  1AM2 A;  3MIS A;  4AQU A;  1R7M A;  4UN8 G;  5I0A A;  3MXA A;  4UN8 A;  1AT0 A;  3OOL A;  3HYJ A;  1LWT A;  3QQY A;  5AKF A;  3C0W A;  4UT0 A;  4Z1Z A;  3NZM A;  5A77 A;  5E63 A;  2EX5 A;  4AQX A;  3MXB A;  3FD2 A;  3IGD A;  1B24 A;  2L8L A;  2VBN B;  4GIG A;  2CW8 A;  1G9Y A;  4D6O A;  4UNC A;  1M5X A;  1UM2 A;  1ZDE A;  2LQM A;  2I3Q A;  4O1R A;  5A0W A;  1VDE A;  5E5S A;  4AAB A;  1ZD7 A;  1EF0 A;  3MXB B;  4D6N A;  3OOR A;  2I3P A;  1DQ3 A;  5A72 A;  4UN9 G;  4UN9 A;  1JVA A;  2CW7 A;  1U0D A;  3E54 A; 
#chains in the Genus database with same CATH homology
 2IN9 A;  1MI8 A;  2JMZ A;  2LWY A;  5AK9 A;  2VBO A;  2VBL A;  4LOX A;  2VS7 A;  2O7M A;  5A0M A;  2KEQ A;  4LQ0 A;  3MX9 A;  2QOJ Z;  2VS8 A;  2IN8 A;  3EH8 A;  4AAE A;  4YIS A;  4YHX A;  4UNA A;  4E2T A;  4EFJ A;  1U0C A;  1G9Z A;  1BP7 A;  2IMZ A;  3IFJ A;  1LWS A;  2VBJ A;  2VBO B;  1T9J A;  2AB5 A;  2VBL B;  1DFA A;  4UNB A;  5A0M B;  2FLD A;  5E5O A;  2IN0 A;  4UN7 G;  3MIP A;  1P8K Z;  2LCJ A;  4UN7 A;  4YIT A;  4O1S A;  1GPP A;  2JNQ A;  4E2U A;  5A78 A;  3KO2 A;  1N3E A;  3R7P A;  2DCH X;  2XE0 A;  2VBJ B;  3HYI A;  1T9I A;  3UVF A;  5K08 A;  4Z1X A;  5AKN A;  5A74 A;  4KL6 A;  1N3F A;  5E67 A;  4OZ6 A;  3C0X A;  4Z20 A;  4AAG A;  1MOW A;  4KL5 A;  2XE0 B;  5AKM A;  1AF5 A;  4AAD A;  2VBN A;  4AAF A;  1AM2 A;  3MIS A;  4AQU A;  1R7M A;  4UN8 G;  5I0A A;  3MXA A;  4UN8 A;  1AT0 A;  3OOL A;  3HYJ A;  1LWT A;  3QQY A;  5AKF A;  3C0W A;  4UT0 A;  4Z1Z A;  3NZM A;  5A77 A;  5E63 A;  2EX5 A;  4AQX A;  3MXB A;  3FD2 A;  3IGD A;  1B24 A;  2L8L A;  2VBN B;  4GIG A;  2CW8 A;  1G9Y A;  4D6O A;  4UNC A;  1M5X A;  1UM2 A;  1ZDE A;  2LQM A;  2I3Q A;  4O1R A;  5A0W A;  1VDE A;  5E5S A;  4AAB A;  1ZD7 A;  1EF0 A;  3MXB B;  4D6N A;  3OOR A;  2I3P A;  1DQ3 A;  5A72 A;  4UN9 G;  4UN9 A;  1JVA A;  2CW7 A;  1U0D A;  3E54 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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