1DIQA

Crystal structure of p-cresol methylhydroxylase with substrate bound
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
515
structure length
515
Chain Sequence
AVLPKGVTQGEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDEFEKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRSGIDLNNDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords P-CRESOL METHYLHYDROXYLASE
publication title Structures of the flavocytochrome p-cresol methylhydroxylase and its enzyme-substrate complex: gated substrate entry and proton relays support the proposed catalytic mechanism.
pubmed doi rcsb
total genus 182
structure length 515
sequence length 515
chains with identical sequence B
ec nomenclature ec 1.17.9.1: 4-methylphenol dehydrogenase (hydroxylating).
pdb deposition date 1999-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1diqA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1diqA02
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1diqA03
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1diqA01
1AHZA 2NQWA 5HMRA 1N61C 1WYGA 3TSHA 1QLUA 1E8GA 4BCAA 2P3HA 3VTEA 2QPMA 2PLIA 2VAOA 5AE3A 1VDVA 1N60C 2VFUA 2PLSA 2Q4WA 5AE1A 3W8ZA 2O3GA 3TX1A 2W54A 1N63C 2Q85A 2OAIA 1WVFA 2BVFA 1DIIA 1E8HA 3NVZB 3KJMA 2E3TA 1ZXIC 1N5XA 3D2JA 3NRZB 4XLOA 3W8WA 3S1DA 2VFVA 2W3SA 3BW7A 1FFUC 2YVSA 3NS1B 1WVEA 1QLTA 3FWAA 3HRDC 4ZOHB 3NVYB 2VFRA 3AN1A 2BVHA 5FXFA 4PWBA 4HG0A 3LLBA 1F0XA 3D2HA 1W1QA 5HHZA 1FFVC 1E0YA 4O95A 4BC9A 5ADZA 3B9JB 5AE2A 5FXPA 3AM9A 4DNSA 3EUB3 3FW7A 4BC7A 4PWCA 1AHUA 3GSYA 3S1EA 1W1RA 1MBTA 1HSKA 2BVGA 4JB1A 1DIQA 3NVWB 3TSJA 1I19A 2GQTA 5FXEA 1JRPA 1N62C 3AMZA 1JROA 1UXYA 3LAEA 2R2ZA 2EXRA 3W8XA 1W1SA 4UD8A 2QKNA 3D2DA 3ETRB 1FO4A 1E8FA 1N5WC 2W55A 1W1KA 4PZFA 2R8DA 4OALA 1AHVA 2P4PA 1W1OA 4PVEA 4ML8A 1MBBA 4PVKA 1W1JA 5G5GB 2AXRA 3S1FA 4BBYA 3FW9A 3DEDA 1W1MA 3NVVB 4MLAA 3S1CA 1RM6B 1DZNA 1ZR6A 1SB3B 3I99A 1W1LA 4PVHA 5G5HB 1VAOA 3PM9A 5HQXA 3C0PA 2I0KA 2P13A 4JAYA 5FXDA 3DQ0A 4PVJA 2MBRA 1T3QC 3JS8A 2W3RA 5D79A 2GQUA 4EC3A 3SR6B 1FIQB 4PYTA 2RK5A 2VFTA 1V97A 3FW8A 2VFSA
chains in the Genus database with same CATH superfamily
1AHZA 5L6FA 2NQWA 5HMRA 2UUUA 1N61C 1WYGA 3TSHA 1QLUA 1E8GA 4BCAA 2P3HA 3VTEA 2QPMA 2PLIA 2IPIA 2VAOA 5L6GA 5AE3A 1VDVA 1N60C 2VFUA 2PLSA 2Q4WA 3POPA 5AWVA 5AE1A 3EJDB 3W8ZA 2O3GA 3TX1A 2W54A 1N63C 2Q85A 2OAIA 1WVFA 2BVFA 3PQBA 1DIIA 1E8HA 3NVZB 3KJMA 2E3TA 1ZXIC 1N5XA 3D2JA 3NRZB 4XLOA 3RJ8A 2UUVA 3W8WA 3S1DA 2VFVA 2W3SA 3BW7A 1FFUC 2YVSA 5K8EA 3NS1B 1WVEA 1QLTA 3FWAA 3NVYB 4ZOHB 3HRDC 2VFRA 3AN1A 2BVHA 5FXFA 4PWBA 4HG0A 3LLBA 1F0XA 3D2HA 1W1QA 5HHZA 1FFVC 1E0YA 4O95A 4BC9A 5ADZA 3B9JB 5AE2A 2Y08A 5FXPA 3AM9A 4DNSA 3EUB3 3FW7A 4BC7A 4PWCA 1AHUA 3GSYA 3S1EA 1W1RA 1MBTA 1HSKA 2BVGA 3EJBB 4JB1A 1DIQA 3EJEB 3NVWB 1I19A 3TSJA 2GQTA 5FXEA 1JRPA 1N62C 3AMZA 1JROA 1UXYA 3LAEA 2R2ZA 2EXRA 5I1VA 3W8XA 1W1SA 4UD8A 2QKNA 3D2DA 3ETRB 1FO4A 1E8FA 1N5WC 2W55A 1W1KA 4PZFA 2R8DA 4OALA 1AHVA 2P4PA 3RJAA 1W1OA 2WDWA 4PVEA 4ML8A 1MBBA 4PVKA 1W1JA 5G5GB 2AXRA 3S1FA 4BBYA 3FW9A 3DEDA 3HSUA 1W1MA 3NVVB 4MLAA 3S1CA 1RM6B 2Y4GA 1DZNA 1ZR6A 1SB3B 5I1WA 3I99A 1W1LA 4PVHA 5G5HB 1VAOA 3PM9A 5HQXA 3C0PA 2I0KA 2P13A 4JAYA 5FXDA 3DQ0A 4PVJA 2MBRA 1T3QC 3JS8A 2W3RA 5D79A 2Y3SA 2GQUA 4EC3A 3SR6B 1FIQB 4PYTA 2RK5A 2VFTA 2Y3RA 1V97A 3FW8A 2VFSA
chains in the Genus database with same CATH topology
1AHZA 5L6FA 2NQWA 5HMRA 2UUUA 1N61C 1WYGA 3TSHA 1QLUA 1E8GA 4BCAA 2P3HA 3VTEA 2QPMA 2PLIA 2IPIA 2VAOA 5L6GA 5AE3A 1VDVA 1N60C 2VFUA 2PLSA 2Q4WA 3POPA 5AWVA 5AE1A 3W8ZA 2O3GA 3TX1A 2W54A 1N63C 2Q85A 2OAIA 1WVFA 2BVFA 3PQBA 1DIIA 1E8HA 3NVZB 3KJMA 2E3TA 1ZXIC 1N5XA 3D2JA 3NRZB 4XLOA 3RJ8A 2UUVA 3W8WA 3S1DA 2VFVA 2W3SA 3BW7A 1FFUC 2YVSA 5K8EA 3NS1B 1WVEA 1QLTA 3FWAA 3HRDC 4ZOHB 3NVYB 2VFRA 3AN1A 2BVHA 5FXFA 4PWBA 4HG0A 3LLBA 1F0XA 3D2HA 1W1QA 5HHZA 1FFVC 1E0YA 4O95A 4BC9A 5ADZA 3B9JB 5AE2A 2Y08A 5FXPA 3AM9A 4DNSA 3EUB3 3FW7A 4BC7A 4PWCA 1AHUA 3GSYA 3S1EA 1W1RA 1MBTA 1HSKA 2BVGA 4JB1A 1DIQA 3NVWB 3TSJA 1I19A 2GQTA 5FXEA 1JRPA 1N62C 3AMZA 1JROA 1UXYA 3LAEA 2R2ZA 2EXRA 5I1VA 3W8XA 1W1SA 4UD8A 2QKNA 3D2DA 3ETRB 1FO4A 1E8FA 1N5WC 2W55A 1W1KA 4PZFA 2R8DA 4OALA 1AHVA 2P4PA 3RJAA 1W1OA 2WDWA 4PVEA 4ML8A 1MBBA 4PVKA 1W1JA 5G5GB 2AXRA 3S1FA 4BBYA 3FW9A 3DEDA 3HSUA 1W1MA 3NVVB 4MLAA 3S1CA 1RM6B 2Y4GA 1DZNA 1ZR6A 1SB3B 5I1WA 3I99A 1W1LA 4PVHA 5G5HB 1VAOA 3PM9A 5HQXA 3C0PA 2I0KA 2P13A 4JAYA 5FXDA 3DQ0A 4PVJA 2MBRA 1T3QC 3JS8A 2W3RA 5D79A 2Y3SA 2GQUA 4EC3A 3SR6B 1FIQB 4PYTA 2RK5A 2VFTA 2Y3RA 1V97A 3FW8A 2VFSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AHZ A;  2NQW A;  5HMR A;  1N61 C;  1WYG A;  3TSH A;  1QLU A;  1E8G A;  4BCA A;  2P3H A;  3VTE A;  2QPM A;  2PLI A;  2VAO A;  5AE3 A;  1VDV A;  1N60 C;  2VFU A;  2PLS A;  2Q4W A;  5AE1 A;  3W8Z A;  2O3G A;  3TX1 A;  2W54 A;  1N63 C;  2Q85 A;  2OAI A;  1WVF A;  2BVF A;  1DII A;  1E8H A;  3NVZ B;  3KJM A;  2E3T A;  1ZXI C;  1N5X A;  3D2J A;  3NRZ B;  4XLO A;  3W8W A;  3S1D A;  2VFV A;  2W3S A;  3BW7 A;  1FFU C;  2YVS A;  3NS1 B;  1WVE A;  1QLT A;  3FWA A;  3HRD C;  4ZOH B;  3NVY B;  2VFR A;  3AN1 A;  2BVH A;  5FXF A;  4PWB A;  4HG0 A;  3LLB A;  1F0X A;  3D2H A;  1W1Q A;  5HHZ A;  1FFV C;  1E0Y A;  4O95 A;  4BC9 A;  5ADZ A;  3B9J B;  5AE2 A;  5FXP A;  3AM9 A;  4DNS A;  3EUB 3;  3FW7 A;  4BC7 A;  4PWC A;  1AHU A;  3GSY A;  3S1E A;  1W1R A;  1MBT A;  1HSK A;  2BVG A;  4JB1 A;  1DIQ A;  3NVW B;  3TSJ A;  1I19 A;  2GQT A;  5FXE A;  1JRP A;  1N62 C;  3AMZ A;  1JRO A;  1UXY A;  3LAE A;  2R2Z A;  2EXR A;  3W8X A;  1W1S A;  4UD8 A;  2QKN A;  3D2D A;  3ETR B;  1FO4 A;  1E8F A;  1N5W C;  2W55 A;  1W1K A;  4PZF A;  2R8D A;  4OAL A;  1AHV A;  2P4P A;  1W1O A;  4PVE A;  4ML8 A;  1MBB A;  4PVK A;  1W1J A;  5G5G B;  2AXR A;  3S1F A;  4BBY A;  3FW9 A;  3DED A;  1W1M A;  3NVV B;  4MLA A;  3S1C A;  1RM6 B;  1DZN A;  1ZR6 A;  1SB3 B;  3I99 A;  1W1L A;  4PVH A;  5G5H B;  1VAO A;  3PM9 A;  5HQX A;  3C0P A;  2I0K A;  2P13 A;  4JAY A;  5FXD A;  3DQ0 A;  4PVJ A;  2MBR A;  1T3Q C;  3JS8 A;  2W3R A;  5D79 A;  2GQU A;  4EC3 A;  3SR6 B;  1FIQ B;  4PYT A;  2RK5 A;  2VFT A;  1V97 A;  3FW8 A;  2VFS A; 
#chains in the Genus database with same CATH topology
 1AHZ A;  5L6F A;  2NQW A;  5HMR A;  2UUU A;  1N61 C;  1WYG A;  3TSH A;  1QLU A;  1E8G A;  4BCA A;  2P3H A;  3VTE A;  2QPM A;  2PLI A;  2IPI A;  2VAO A;  5L6G A;  5AE3 A;  1VDV A;  1N60 C;  2VFU A;  2PLS A;  2Q4W A;  3POP A;  5AWV A;  5AE1 A;  3EJD B;  3W8Z A;  2O3G A;  3TX1 A;  2W54 A;  1N63 C;  2Q85 A;  2OAI A;  1WVF A;  2BVF A;  3PQB A;  1DII A;  1E8H A;  3NVZ B;  3KJM A;  2E3T A;  1ZXI C;  1N5X A;  3D2J A;  3NRZ B;  4XLO A;  3RJ8 A;  2UUV A;  3W8W A;  3S1D A;  2VFV A;  2W3S A;  3BW7 A;  1FFU C;  2YVS A;  5K8E A;  3NS1 B;  1WVE A;  1QLT A;  3FWA A;  3NVY B;  4ZOH B;  3HRD C;  2VFR A;  3AN1 A;  2BVH A;  5FXF A;  4PWB A;  4HG0 A;  3LLB A;  1F0X A;  3D2H A;  1W1Q A;  5HHZ A;  1FFV C;  1E0Y A;  4O95 A;  4BC9 A;  5ADZ A;  3B9J B;  5AE2 A;  2Y08 A;  5FXP A;  3AM9 A;  4DNS A;  3EUB 3;  3FW7 A;  4BC7 A;  4PWC A;  1AHU A;  3GSY A;  3S1E A;  1W1R A;  1MBT A;  1HSK A;  2BVG A;  3EJB B;  4JB1 A;  1DIQ A;  3EJE B;  3NVW B;  1I19 A;  3TSJ A;  2GQT A;  5FXE A;  1JRP A;  1N62 C;  3AMZ A;  1JRO A;  1UXY A;  3LAE A;  2R2Z A;  2EXR A;  5I1V A;  3W8X A;  1W1S A;  4UD8 A;  2QKN A;  3D2D A;  3ETR B;  1FO4 A;  1E8F A;  1N5W C;  2W55 A;  1W1K A;  4PZF A;  2R8D A;  4OAL A;  1AHV A;  2P4P A;  3RJA A;  1W1O A;  2WDW A;  4PVE A;  4ML8 A;  1MBB A;  4PVK A;  1W1J A;  5G5G B;  2AXR A;  3S1F A;  4BBY A;  3FW9 A;  3DED A;  3HSU A;  1W1M A;  3NVV B;  4MLA A;  3S1C A;  1RM6 B;  2Y4G A;  1DZN A;  1ZR6 A;  1SB3 B;  5I1W A;  3I99 A;  1W1L A;  4PVH A;  5G5H B;  1VAO A;  3PM9 A;  5HQX A;  3C0P A;  2I0K A;  2P13 A;  4JAY A;  5FXD A;  3DQ0 A;  4PVJ A;  2MBR A;  1T3Q C;  3JS8 A;  2W3R A;  5D79 A;  2Y3S A;  2GQU A;  4EC3 A;  3SR6 B;  1FIQ B;  4PYT A;  2RK5 A;  2VFT A;  2Y3R A;  1V97 A;  3FW8 A;  2VFS A; 
#chains in the Genus database with same CATH homology
 1AHZ A;  5L6F A;  2NQW A;  5HMR A;  2UUU A;  1N61 C;  1WYG A;  3TSH A;  1QLU A;  1E8G A;  4BCA A;  2P3H A;  3VTE A;  2QPM A;  2PLI A;  2IPI A;  2VAO A;  5L6G A;  5AE3 A;  1VDV A;  1N60 C;  2VFU A;  2PLS A;  2Q4W A;  3POP A;  5AWV A;  5AE1 A;  3W8Z A;  2O3G A;  3TX1 A;  2W54 A;  1N63 C;  2Q85 A;  2OAI A;  1WVF A;  2BVF A;  3PQB A;  1DII A;  1E8H A;  3NVZ B;  3KJM A;  2E3T A;  1ZXI C;  1N5X A;  3D2J A;  3NRZ B;  4XLO A;  3RJ8 A;  2UUV A;  3W8W A;  3S1D A;  2VFV A;  2W3S A;  3BW7 A;  1FFU C;  2YVS A;  5K8E A;  3NS1 B;  1WVE A;  1QLT A;  3FWA A;  3HRD C;  4ZOH B;  3NVY B;  2VFR A;  3AN1 A;  2BVH A;  5FXF A;  4PWB A;  4HG0 A;  3LLB A;  1F0X A;  3D2H A;  1W1Q A;  5HHZ A;  1FFV C;  1E0Y A;  4O95 A;  4BC9 A;  5ADZ A;  3B9J B;  5AE2 A;  2Y08 A;  5FXP A;  3AM9 A;  4DNS A;  3EUB 3;  3FW7 A;  4BC7 A;  4PWC A;  1AHU A;  3GSY A;  3S1E A;  1W1R A;  1MBT A;  1HSK A;  2BVG A;  4JB1 A;  1DIQ A;  3NVW B;  3TSJ A;  1I19 A;  2GQT A;  5FXE A;  1JRP A;  1N62 C;  3AMZ A;  1JRO A;  1UXY A;  3LAE A;  2R2Z A;  2EXR A;  5I1V A;  3W8X A;  1W1S A;  4UD8 A;  2QKN A;  3D2D A;  3ETR B;  1FO4 A;  1E8F A;  1N5W C;  2W55 A;  1W1K A;  4PZF A;  2R8D A;  4OAL A;  1AHV A;  2P4P A;  3RJA A;  1W1O A;  2WDW A;  4PVE A;  4ML8 A;  1MBB A;  4PVK A;  1W1J A;  5G5G B;  2AXR A;  3S1F A;  4BBY A;  3FW9 A;  3DED A;  3HSU A;  1W1M A;  3NVV B;  4MLA A;  3S1C A;  1RM6 B;  2Y4G A;  1DZN A;  1ZR6 A;  1SB3 B;  5I1W A;  3I99 A;  1W1L A;  4PVH A;  5G5H B;  1VAO A;  3PM9 A;  5HQX A;  3C0P A;  2I0K A;  2P13 A;  4JAY A;  5FXD A;  3DQ0 A;  4PVJ A;  2MBR A;  1T3Q C;  3JS8 A;  2W3R A;  5D79 A;  2Y3S A;  2GQU A;  4EC3 A;  3SR6 B;  1FIQ B;  4PYT A;  2RK5 A;  2VFT A;  2Y3R A;  1V97 A;  3FW8 A;  2VFS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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