1DIQA

Crystal structure of p-cresol methylhydroxylase with substrate bound
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
515
structure length
515
Chain Sequence
b'AVLPKGVTQGEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDEFEKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRSGIDLNNDF'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P-CRESOL METHYLHYDROXYLASE
publication title Structures of the flavocytochrome p-cresol methylhydroxylase and its enzyme-substrate complex: gated substrate entry and proton relays support the proposed catalytic mechanism.
pubmed doi rcsb
molecule tags Oxidoreductase
total genus 182
structure length 515
sequence length 515
chains with identical sequence B
ec nomenclature ec 1.17.9.1: 4-methylphenol dehydrogenase (hydroxylating).
pdb deposition date 1999-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1diqA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1diqA02
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1diqA03
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1diqA01
2VFTA 5FXEA 1E8HA 4PVHA 2VFSA 2W3SA 1DZNA 1V97A 1VAOA 1MBBA 1DIIA 1DIQA 2P4PA 3AN1A 2GQUA 5FXPA 1ZXIC 2Q4WA 1N61C 3HRDC 3W8WA 2GQTA 1W1SA 3TSHA 4PVKA 4ML8A 1FO4A 1AHVA 1W1QA 4PWCA 1T3QC 3LLBA 4JB1A 4XLOA 5HQXA 1FIQB 3D2HA 5G5HB 5ADZA 3I99A 3JS8A 5AE2A 4EC3A 3DEDA 4O95A 3S1EA 1AHUA 2Q85A 4BCAA 1I19A 3FW9A 3NVYB 3AMZA 1FFUC 3FW7A 4ZOHB 1N60C 3KJMA 4BC9A 3AM9A 3EUB3 3S1DA 2BVGA 2BVHA 2E3TA 1E8GA 5AE1A 1W1KA 2W55A 1F0XA 1UXYA 1N63C 2QKNA 5HMRA 1JROA 4PYTA 2PLIA 1E8FA 2AXRA 2VFVA 5AE3A 3VTEA 1W1JA 2W3RA 5HHZA 3NVWB 2PLSA 1AHZA 2I0KA 4DNSA 5FXFA 1WVEA 4PVEA 2W54A 3LAEA 1WVFA 3NRZB 1VDVA 5FXDA 3FWAA 3ETRB 4UD8A 1FFVC 1ZR6A 3C0PA 5D79A 3W8XA 2VAOA 3D2DA 1W1MA 2QPMA 1SB3B 2RK5A 1W1OA 3TSJA 4BBYA 1HSKA 4HG0A 3B9JB 1N62C 1W1LA 3S1FA 3NS1B 2R2ZA 4OALA 1WYGA 3GSYA 3FW8A 3PM9A 4MLAA 4JAYA 1RM6B 3NVVB 1QLUA 2EXRA 4PVJA 1MBTA 4PWBA 3SR6B 3TX1A 3W8ZA 1QLTA 2O3GA 5G5GB 1N5WC 3NVZB 4PZFA 3BW7A 2P13A 2OAIA 2VFRA 3D2JA 1N5XA 4BC7A 2BVFA 3DQ0A 2VFUA 1JRPA 3S1CA 2R8DA 2YVSA 2NQWA 1W1RA 2P3HA 1E0YA 2MBRA
chains in the Genus database with same CATH superfamily
2VFTA 5FXEA 1E8HA 4PVHA 5I1WA 2VFSA 2W3SA 1DZNA 1V97A 2WDWA 1VAOA 1MBBA 1DIIA 1DIQA 2P4PA 3AN1A 2Y3SA 2Y3RA 2GQUA 5FXPA 1ZXIC 2Q4WA 1N61C 3HRDC 2UUVA 5I1VA 3W8WA 2GQTA 1W1SA 3TSHA 4PVKA 4ML8A 1FO4A 1AHVA 1W1QA 4PWCA 1T3QC 3LLBA 4JB1A 4XLOA 5HQXA 1FIQB 3HSUA 3D2HA 5G5HB 5ADZA 3I99A 3JS8A 5AE2A 4EC3A 3DEDA 4O95A 3S1EA 1AHUA 2Q85A 4BCAA 1I19A 3FW9A 3NVYB 3AMZA 3RJAA 1FFUC 3FW7A 3EJBB 1N60C 4ZOHB 3KJMA 4BC9A 3AM9A 3EUB3 3S1DA 5L6GA 3PQBA 2BVGA 2BVHA 3POPA 2E3TA 1E8GA 5AE1A 1W1KA 2W55A 1F0XA 1UXYA 1N63C 2QKNA 5HMRA 1JROA 4PYTA 2PLIA 1E8FA 2AXRA 2VFVA 5AE3A 3VTEA 1W1JA 2W3RA 2UUUA 5HHZA 3NVWB 2PLSA 1AHZA 2I0KA 4DNSA 5L6FA 5FXFA 5AWVA 1WVEA 2Y4GA 4PVEA 5K8EA 2W54A 3LAEA 1WVFA 3NRZB 3RJ8A 1VDVA 5FXDA 3FWAA 3ETRB 4UD8A 1FFVC 1ZR6A 3C0PA 5D79A 3W8XA 2VAOA 3D2DA 1W1MA 2QPMA 1SB3B 2RK5A 1W1OA 3TSJA 4BBYA 1HSKA 4HG0A 3B9JB 1N62C 1W1LA 3S1FA 3NS1B 2R2ZA 2Y08A 4OALA 1WYGA 3GSYA 3FW8A 3PM9A 4MLAA 4JAYA 1RM6B 3NVVB 1QLUA 2EXRA 4PVJA 1MBTA 4PWBA 3SR6B 3TX1A 3W8ZA 1QLTA 2O3GA 5G5GB 1N5WC 3EJDB 3NVZB 4PZFA 3BW7A 2IPIA 2P13A 2OAIA 2VFRA 3D2JA 1N5XA 4BC7A 2BVFA 3DQ0A 3EJEB 2VFUA 1JRPA 3S1CA 2R8DA 2YVSA 2NQWA 1W1RA 2P3HA 1E0YA 2MBRA
chains in the Genus database with same CATH topology
2VFTA 5FXEA 1E8HA 4PVHA 5I1WA 2VFSA 2W3SA 1DZNA 1V97A 2WDWA 1VAOA 1MBBA 1DIIA 1DIQA 2P4PA 3AN1A 2Y3SA 2Y3RA 2GQUA 5FXPA 1ZXIC 2Q4WA 1N61C 3HRDC 2UUVA 5I1VA 3W8WA 2GQTA 1W1SA 3TSHA 4PVKA 4ML8A 1FO4A 1AHVA 1W1QA 4PWCA 1T3QC 3LLBA 4JB1A 4XLOA 5HQXA 1FIQB 3HSUA 3D2HA 5G5HB 5ADZA 3I99A 3JS8A 5AE2A 4EC3A 3DEDA 4O95A 3S1EA 1AHUA 2Q85A 4BCAA 1I19A 3FW9A 3NVYB 3AMZA 3RJAA 1FFUC 3FW7A 4ZOHB 1N60C 3KJMA 4BC9A 3AM9A 3EUB3 3S1DA 5L6GA 3PQBA 2BVGA 2BVHA 3POPA 2E3TA 1E8GA 5AE1A 1W1KA 2W55A 1F0XA 1UXYA 1N63C 2QKNA 5HMRA 1JROA 4PYTA 2PLIA 1E8FA 2AXRA 2VFVA 5AE3A 3VTEA 1W1JA 2W3RA 2UUUA 5HHZA 3NVWB 2PLSA 1AHZA 2I0KA 4DNSA 5L6FA 5FXFA 5AWVA 1WVEA 2Y4GA 4PVEA 5K8EA 2W54A 3LAEA 1WVFA 3NRZB 3RJ8A 1VDVA 5FXDA 3FWAA 3ETRB 4UD8A 1FFVC 1ZR6A 3C0PA 5D79A 3W8XA 2VAOA 3D2DA 1W1MA 2QPMA 1SB3B 2RK5A 1W1OA 3TSJA 4BBYA 1HSKA 4HG0A 3B9JB 1N62C 1W1LA 3S1FA 3NS1B 2R2ZA 2Y08A 4OALA 1WYGA 3GSYA 3FW8A 3PM9A 4MLAA 4JAYA 1RM6B 3NVVB 1QLUA 2EXRA 4PVJA 1MBTA 4PWBA 3SR6B 3TX1A 3W8ZA 1QLTA 2O3GA 5G5GB 1N5WC 3NVZB 4PZFA 3BW7A 2IPIA 2P13A 2OAIA 2VFRA 3D2JA 1N5XA 4BC7A 2BVFA 3DQ0A 2VFUA 1JRPA 3S1CA 2R8DA 2YVSA 2NQWA 1W1RA 2P3HA 1E0YA 2MBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFT A;  5FXE A;  1E8H A;  4PVH A;  2VFS A;  2W3S A;  1DZN A;  1V97 A;  1VAO A;  1MBB A;  1DII A;  1DIQ A;  2P4P A;  3AN1 A;  2GQU A;  5FXP A;  1ZXI C;  2Q4W A;  1N61 C;  3HRD C;  3W8W A;  2GQT A;  1W1S A;  3TSH A;  4PVK A;  4ML8 A;  1FO4 A;  1AHV A;  1W1Q A;  4PWC A;  1T3Q C;  3LLB A;  4JB1 A;  4XLO A;  5HQX A;  1FIQ B;  3D2H A;  5G5H B;  5ADZ A;  3I99 A;  3JS8 A;  5AE2 A;  4EC3 A;  3DED A;  4O95 A;  3S1E A;  1AHU A;  2Q85 A;  4BCA A;  1I19 A;  3FW9 A;  3NVY B;  3AMZ A;  1FFU C;  3FW7 A;  4ZOH B;  1N60 C;  3KJM A;  4BC9 A;  3AM9 A;  3EUB 3;  3S1D A;  2BVG A;  2BVH A;  2E3T A;  1E8G A;  5AE1 A;  1W1K A;  2W55 A;  1F0X A;  1UXY A;  1N63 C;  2QKN A;  5HMR A;  1JRO A;  4PYT A;  2PLI A;  1E8F A;  2AXR A;  2VFV A;  5AE3 A;  3VTE A;  1W1J A;  2W3R A;  5HHZ A;  3NVW B;  2PLS A;  1AHZ A;  2I0K A;  4DNS A;  5FXF A;  1WVE A;  4PVE A;  2W54 A;  3LAE A;  1WVF A;  3NRZ B;  1VDV A;  5FXD A;  3FWA A;  3ETR B;  4UD8 A;  1FFV C;  1ZR6 A;  3C0P A;  5D79 A;  3W8X A;  2VAO A;  3D2D A;  1W1M A;  2QPM A;  1SB3 B;  2RK5 A;  1W1O A;  3TSJ A;  4BBY A;  1HSK A;  4HG0 A;  3B9J B;  1N62 C;  1W1L A;  3S1F A;  3NS1 B;  2R2Z A;  4OAL A;  1WYG A;  3GSY A;  3FW8 A;  3PM9 A;  4MLA A;  4JAY A;  1RM6 B;  3NVV B;  1QLU A;  2EXR A;  4PVJ A;  1MBT A;  4PWB A;  3SR6 B;  3TX1 A;  3W8Z A;  1QLT A;  2O3G A;  5G5G B;  1N5W C;  3NVZ B;  4PZF A;  3BW7 A;  2P13 A;  2OAI A;  2VFR A;  3D2J A;  1N5X A;  4BC7 A;  2BVF A;  3DQ0 A;  2VFU A;  1JRP A;  3S1C A;  2R8D A;  2YVS A;  2NQW A;  1W1R A;  2P3H A;  1E0Y A;  2MBR A; 
#chains in the Genus database with same CATH topology
 2VFT A;  5FXE A;  1E8H A;  4PVH A;  5I1W A;  2VFS A;  2W3S A;  1DZN A;  1V97 A;  2WDW A;  1VAO A;  1MBB A;  1DII A;  1DIQ A;  2P4P A;  3AN1 A;  2Y3S A;  2Y3R A;  2GQU A;  5FXP A;  1ZXI C;  2Q4W A;  1N61 C;  3HRD C;  2UUV A;  5I1V A;  3W8W A;  2GQT A;  1W1S A;  3TSH A;  4PVK A;  4ML8 A;  1FO4 A;  1AHV A;  1W1Q A;  4PWC A;  1T3Q C;  3LLB A;  4JB1 A;  4XLO A;  5HQX A;  1FIQ B;  3HSU A;  3D2H A;  5G5H B;  5ADZ A;  3I99 A;  3JS8 A;  5AE2 A;  4EC3 A;  3DED A;  4O95 A;  3S1E A;  1AHU A;  2Q85 A;  4BCA A;  1I19 A;  3FW9 A;  3NVY B;  3AMZ A;  3RJA A;  1FFU C;  3FW7 A;  3EJB B;  1N60 C;  4ZOH B;  3KJM A;  4BC9 A;  3AM9 A;  3EUB 3;  3S1D A;  5L6G A;  3PQB A;  2BVG A;  2BVH A;  3POP A;  2E3T A;  1E8G A;  5AE1 A;  1W1K A;  2W55 A;  1F0X A;  1UXY A;  1N63 C;  2QKN A;  5HMR A;  1JRO A;  4PYT A;  2PLI A;  1E8F A;  2AXR A;  2VFV A;  5AE3 A;  3VTE A;  1W1J A;  2W3R A;  2UUU A;  5HHZ A;  3NVW B;  2PLS A;  1AHZ A;  2I0K A;  4DNS A;  5L6F A;  5FXF A;  5AWV A;  1WVE A;  2Y4G A;  4PVE A;  5K8E A;  2W54 A;  3LAE A;  1WVF A;  3NRZ B;  3RJ8 A;  1VDV A;  5FXD A;  3FWA A;  3ETR B;  4UD8 A;  1FFV C;  1ZR6 A;  3C0P A;  5D79 A;  3W8X A;  2VAO A;  3D2D A;  1W1M A;  2QPM A;  1SB3 B;  2RK5 A;  1W1O A;  3TSJ A;  4BBY A;  1HSK A;  4HG0 A;  3B9J B;  1N62 C;  1W1L A;  3S1F A;  3NS1 B;  2R2Z A;  2Y08 A;  4OAL A;  1WYG A;  3GSY A;  3FW8 A;  3PM9 A;  4MLA A;  4JAY A;  1RM6 B;  3NVV B;  1QLU A;  2EXR A;  4PVJ A;  1MBT A;  4PWB A;  3SR6 B;  3TX1 A;  3W8Z A;  1QLT A;  2O3G A;  5G5G B;  1N5W C;  3EJD B;  3NVZ B;  4PZF A;  3BW7 A;  2IPI A;  2P13 A;  2OAI A;  2VFR A;  3D2J A;  1N5X A;  4BC7 A;  2BVF A;  3DQ0 A;  3EJE B;  2VFU A;  1JRP A;  3S1C A;  2R8D A;  2YVS A;  2NQW A;  1W1R A;  2P3H A;  1E0Y A;  2MBR A; 
#chains in the Genus database with same CATH homology
 2VFT A;  5FXE A;  1E8H A;  4PVH A;  5I1W A;  2VFS A;  2W3S A;  1DZN A;  1V97 A;  2WDW A;  1VAO A;  1MBB A;  1DII A;  1DIQ A;  2P4P A;  3AN1 A;  2Y3S A;  2Y3R A;  2GQU A;  5FXP A;  1ZXI C;  2Q4W A;  1N61 C;  3HRD C;  2UUV A;  5I1V A;  3W8W A;  2GQT A;  1W1S A;  3TSH A;  4PVK A;  4ML8 A;  1FO4 A;  1AHV A;  1W1Q A;  4PWC A;  1T3Q C;  3LLB A;  4JB1 A;  4XLO A;  5HQX A;  1FIQ B;  3HSU A;  3D2H A;  5G5H B;  5ADZ A;  3I99 A;  3JS8 A;  5AE2 A;  4EC3 A;  3DED A;  4O95 A;  3S1E A;  1AHU A;  2Q85 A;  4BCA A;  1I19 A;  3FW9 A;  3NVY B;  3AMZ A;  3RJA A;  1FFU C;  3FW7 A;  4ZOH B;  1N60 C;  3KJM A;  4BC9 A;  3AM9 A;  3EUB 3;  3S1D A;  5L6G A;  3PQB A;  2BVG A;  2BVH A;  3POP A;  2E3T A;  1E8G A;  5AE1 A;  1W1K A;  2W55 A;  1F0X A;  1UXY A;  1N63 C;  2QKN A;  5HMR A;  1JRO A;  4PYT A;  2PLI A;  1E8F A;  2AXR A;  2VFV A;  5AE3 A;  3VTE A;  1W1J A;  2W3R A;  2UUU A;  5HHZ A;  3NVW B;  2PLS A;  1AHZ A;  2I0K A;  4DNS A;  5L6F A;  5FXF A;  5AWV A;  1WVE A;  2Y4G A;  4PVE A;  5K8E A;  2W54 A;  3LAE A;  1WVF A;  3NRZ B;  3RJ8 A;  1VDV A;  5FXD A;  3FWA A;  3ETR B;  4UD8 A;  1FFV C;  1ZR6 A;  3C0P A;  5D79 A;  3W8X A;  2VAO A;  3D2D A;  1W1M A;  2QPM A;  1SB3 B;  2RK5 A;  1W1O A;  3TSJ A;  4BBY A;  1HSK A;  4HG0 A;  3B9J B;  1N62 C;  1W1L A;  3S1F A;  3NS1 B;  2R2Z A;  2Y08 A;  4OAL A;  1WYG A;  3GSY A;  3FW8 A;  3PM9 A;  4MLA A;  4JAY A;  1RM6 B;  3NVV B;  1QLU A;  2EXR A;  4PVJ A;  1MBT A;  4PWB A;  3SR6 B;  3TX1 A;  3W8Z A;  1QLT A;  2O3G A;  5G5G B;  1N5W C;  3NVZ B;  4PZF A;  3BW7 A;  2IPI A;  2P13 A;  2OAI A;  2VFR A;  3D2J A;  1N5X A;  4BC7 A;  2BVF A;  3DQ0 A;  2VFU A;  1JRP A;  3S1C A;  2R8D A;  2YVS A;  2NQW A;  1W1R A;  2P3H A;  1E0Y A;  2MBR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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