1DIQA

Crystal structure of p-cresol methylhydroxylase with substrate bound
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
515
structure length
515
Chain Sequence
AVLPKGVTQGEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDEFEKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRSGIDLNNDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structures of the flavocytochrome p-cresol methylhydroxylase and its enzyme-substrate complex: gated substrate entry and proton relays support the proposed catalytic mechanism.
pubmed doi rcsb
molecule tags Oxidoreductase
molecule keywords P-CRESOL METHYLHYDROXYLASE
total genus 182
structure length 515
sequence length 515
chains with identical sequence B
ec nomenclature ec 1.17.9.1: 4-methylphenol dehydrogenase (hydroxylating).
pdb deposition date 1999-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1diqA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1diqA02
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1diqA03
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1diqA01
3LLBA 1HSKA 5G5GB 3NRZB 2OAIA 2VAOA 1V97A 3S1EA 3VTEA 2GQUA 3FWAA 1FFUC 3TSHA 3B9JB 4EC3A 4JB1A 3DEDA 3BW7A 2YVSA 1UXYA 1DIQA 2W3RA 3TSJA 2R8DA 1AHVA 1VDVA 3W8ZA 2VFRA 5ADZA 3AN1A 1N60C 2P3HA 3NVVB 3S1FA 2R2ZA 3TX1A 1W1MA 1W1OA 2QPMA 4PWCA 3FW7A 2BVFA 1N62C 3LAEA 3AM9A 1MBTA 3SR6B 3NVWB 3S1DA 3FW8A 2P4PA 4BC9A 3C0PA 4PVEA 1I19A 3S1CA 4JAYA 5D79A 1SB3B 1WVFA 1N63C 1AHZA 1FO4A 3NVYB 5AE1A 1FFVC 2VFSA 4MLAA 5AE3A 1FIQB 2BVGA 5FXDA 4OALA 4BBYA 2BVHA 1RM6B 1QLUA 1WYGA 3HRDC 1E8GA 2W3SA 4PYTA 2VFVA 3AMZA 3I99A 4UD8A 4O95A 1W1RA 2PLIA 1W1QA 3PM9A 5HHZA 3ETRB 1VAOA 2O3GA 3D2JA 4PWBA 1JRPA 1F0XA 1ZR6A 3FW9A 3GSYA 2EXRA 3D2HA 1W1JA 4PVKA 2E3TA 1QLTA 1E8HA 2AXRA 3W8XA 2P13A 1W1KA 1N5WC 1JROA 1AHUA 5AE2A 3W8WA 2Q85A 5HQXA 1DIIA 2VFUA 4PVHA 4BCAA 3JS8A 1MBBA 2GQTA 5FXFA 1WVEA 3NVZB 1N61C 1E8FA 5FXPA 5FXEA 1T3QC 2Q4WA 4ML8A 2PLSA 2RK5A 4HG0A 4PVJA 4DNSA 1ZXIC 2W55A 3EUB3 4PZFA 3NS1B 2QKNA 5G5HB 1DZNA 1E0YA 2I0KA 3DQ0A 3KJMA 1W1SA 1W1LA 1N5XA 4BC7A 2NQWA 2W54A 2MBRA 5HMRA 2VFTA 4ZOHB 4XLOA 3D2DA
chains in the Genus database with same CATH superfamily
3LLBA 1HSKA 5G5GB 3NRZB 2OAIA 2VAOA 1V97A 3S1EA 3VTEA 2GQUA 3FWAA 1FFUC 3TSHA 3B9JB 4EC3A 4JB1A 2Y4GA 3BW7A 3DEDA 2YVSA 1UXYA 2WDWA 2Y3SA 3HSUA 1DIQA 2W3RA 3EJDB 3TSJA 2R8DA 1AHVA 1VDVA 3W8ZA 2VFRA 5ADZA 3AN1A 1N60C 2P3HA 3NVVB 3S1FA 2R2ZA 3EJEB 3TX1A 1W1MA 1W1OA 3RJAA 2QPMA 4PWCA 3FW7A 2BVFA 3POPA 1N62C 3LAEA 3AM9A 1MBTA 3PQBA 3SR6B 3NVWB 3S1DA 3FW8A 2P4PA 4BC9A 2UUUA 3C0PA 4PVEA 1I19A 3S1CA 4JAYA 5D79A 1SB3B 1WVFA 1N63C 1AHZA 3NVYB 1FO4A 5I1WA 5AE1A 1FFVC 2VFSA 4MLAA 5AE3A 2Y08A 5L6FA 1FIQB 2BVGA 5FXDA 4OALA 4BBYA 2BVHA 1RM6B 1QLUA 1WYGA 3HRDC 1E8GA 2W3SA 4PYTA 2VFVA 3AMZA 3I99A 4UD8A 4O95A 1W1RA 2PLIA 1W1QA 3PM9A 5HHZA 3ETRB 1VAOA 2O3GA 3D2JA 4PWBA 1JRPA 1F0XA 1ZR6A 3FW9A 3GSYA 2EXRA 3D2HA 2Y3RA 1W1JA 4PVKA 2E3TA 1QLTA 1E8HA 2AXRA 3W8XA 2P13A 1W1KA 1N5WC 1JROA 1AHUA 5AE2A 3W8WA 2Q85A 2UUVA 5HQXA 1DIIA 2VFUA 4PVHA 4BCAA 3JS8A 1MBBA 2GQTA 5FXFA 1WVEA 3NVZB 1N61C 3EJBB 1E8FA 5FXPA 5FXEA 1T3QC 2Q4WA 4ML8A 2PLSA 2RK5A 4HG0A 5I1VA 4PVJA 4DNSA 1ZXIC 2W55A 5L6GA 3EUB3 4PZFA 3NS1B 5AWVA 5K8EA 2QKNA 5G5HB 1DZNA 1E0YA 2I0KA 3DQ0A 3KJMA 3RJ8A 1W1SA 1W1LA 1N5XA 4BC7A 2NQWA 2W54A 2MBRA 5HMRA 2VFTA 4ZOHB 4XLOA 2IPIA 3D2DA
chains in the Genus database with same CATH topology
3LLBA 1HSKA 5G5GB 3NRZB 2OAIA 2VAOA 1V97A 3S1EA 3VTEA 2GQUA 3FWAA 1FFUC 3TSHA 3B9JB 4EC3A 4JB1A 2Y4GA 3BW7A 3DEDA 2YVSA 1UXYA 2WDWA 2Y3SA 3HSUA 1DIQA 2W3RA 3TSJA 2R8DA 1AHVA 1VDVA 3W8ZA 2VFRA 5ADZA 3AN1A 1N60C 2P3HA 3NVVB 3S1FA 2R2ZA 3TX1A 1W1MA 1W1OA 3RJAA 2QPMA 4PWCA 3FW7A 2BVFA 3POPA 1N62C 3LAEA 3AM9A 1MBTA 3PQBA 3SR6B 3NVWB 3S1DA 3FW8A 2P4PA 4BC9A 2UUUA 3C0PA 4PVEA 1I19A 3S1CA 4JAYA 5D79A 1SB3B 1WVFA 1N63C 1AHZA 1FO4A 3NVYB 5I1WA 5AE1A 1FFVC 2VFSA 4MLAA 5AE3A 2Y08A 5L6FA 1FIQB 2BVGA 5FXDA 4OALA 4BBYA 2BVHA 1RM6B 1QLUA 1WYGA 3HRDC 1E8GA 2W3SA 4PYTA 2VFVA 3AMZA 3I99A 4UD8A 4O95A 1W1RA 2PLIA 1W1QA 3PM9A 5HHZA 3ETRB 1VAOA 2O3GA 3D2JA 4PWBA 1JRPA 1F0XA 1ZR6A 3FW9A 3GSYA 2EXRA 3D2HA 2Y3RA 1W1JA 4PVKA 2E3TA 1QLTA 1E8HA 2AXRA 3W8XA 2P13A 1W1KA 1N5WC 1JROA 1AHUA 5AE2A 3W8WA 2Q85A 2UUVA 5HQXA 1DIIA 2VFUA 4PVHA 4BCAA 3JS8A 1MBBA 2GQTA 5FXFA 1WVEA 3NVZB 1N61C 1E8FA 5FXPA 5FXEA 1T3QC 2Q4WA 4ML8A 2PLSA 2RK5A 4HG0A 5I1VA 4PVJA 4DNSA 1ZXIC 2W55A 5L6GA 3EUB3 4PZFA 3NS1B 5AWVA 5K8EA 2QKNA 5G5HB 1DZNA 1E0YA 2I0KA 3DQ0A 3KJMA 3RJ8A 1W1SA 1W1LA 1N5XA 4BC7A 2NQWA 2W54A 2MBRA 5HMRA 2VFTA 4ZOHB 4XLOA 2IPIA 3D2DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LLB A;  1HSK A;  5G5G B;  3NRZ B;  2OAI A;  2VAO A;  1V97 A;  3S1E A;  3VTE A;  2GQU A;  3FWA A;  1FFU C;  3TSH A;  3B9J B;  4EC3 A;  4JB1 A;  3DED A;  3BW7 A;  2YVS A;  1UXY A;  1DIQ A;  2W3R A;  3TSJ A;  2R8D A;  1AHV A;  1VDV A;  3W8Z A;  2VFR A;  5ADZ A;  3AN1 A;  1N60 C;  2P3H A;  3NVV B;  3S1F A;  2R2Z A;  3TX1 A;  1W1M A;  1W1O A;  2QPM A;  4PWC A;  3FW7 A;  2BVF A;  1N62 C;  3LAE A;  3AM9 A;  1MBT A;  3SR6 B;  3NVW B;  3S1D A;  3FW8 A;  2P4P A;  4BC9 A;  3C0P A;  4PVE A;  1I19 A;  3S1C A;  4JAY A;  5D79 A;  1SB3 B;  1WVF A;  1N63 C;  1AHZ A;  1FO4 A;  3NVY B;  5AE1 A;  1FFV C;  2VFS A;  4MLA A;  5AE3 A;  1FIQ B;  2BVG A;  5FXD A;  4OAL A;  4BBY A;  2BVH A;  1RM6 B;  1QLU A;  1WYG A;  3HRD C;  1E8G A;  2W3S A;  4PYT A;  2VFV A;  3AMZ A;  3I99 A;  4UD8 A;  4O95 A;  1W1R A;  2PLI A;  1W1Q A;  3PM9 A;  5HHZ A;  3ETR B;  1VAO A;  2O3G A;  3D2J A;  4PWB A;  1JRP A;  1F0X A;  1ZR6 A;  3FW9 A;  3GSY A;  2EXR A;  3D2H A;  1W1J A;  4PVK A;  2E3T A;  1QLT A;  1E8H A;  2AXR A;  3W8X A;  2P13 A;  1W1K A;  1N5W C;  1JRO A;  1AHU A;  5AE2 A;  3W8W A;  2Q85 A;  5HQX A;  1DII A;  2VFU A;  4PVH A;  4BCA A;  3JS8 A;  1MBB A;  2GQT A;  5FXF A;  1WVE A;  3NVZ B;  1N61 C;  1E8F A;  5FXP A;  5FXE A;  1T3Q C;  2Q4W A;  4ML8 A;  2PLS A;  2RK5 A;  4HG0 A;  4PVJ A;  4DNS A;  1ZXI C;  2W55 A;  3EUB 3;  4PZF A;  3NS1 B;  2QKN A;  5G5H B;  1DZN A;  1E0Y A;  2I0K A;  3DQ0 A;  3KJM A;  1W1S A;  1W1L A;  1N5X A;  4BC7 A;  2NQW A;  2W54 A;  2MBR A;  5HMR A;  2VFT A;  4ZOH B;  4XLO A;  3D2D A; 
#chains in the Genus database with same CATH topology
 3LLB A;  1HSK A;  5G5G B;  3NRZ B;  2OAI A;  2VAO A;  1V97 A;  3S1E A;  3VTE A;  2GQU A;  3FWA A;  1FFU C;  3TSH A;  3B9J B;  4EC3 A;  4JB1 A;  2Y4G A;  3BW7 A;  3DED A;  2YVS A;  1UXY A;  2WDW A;  2Y3S A;  3HSU A;  1DIQ A;  2W3R A;  3EJD B;  3TSJ A;  2R8D A;  1AHV A;  1VDV A;  3W8Z A;  2VFR A;  5ADZ A;  3AN1 A;  1N60 C;  2P3H A;  3NVV B;  3S1F A;  2R2Z A;  3EJE B;  3TX1 A;  1W1M A;  1W1O A;  3RJA A;  2QPM A;  4PWC A;  3FW7 A;  2BVF A;  3POP A;  1N62 C;  3LAE A;  3AM9 A;  1MBT A;  3PQB A;  3SR6 B;  3NVW B;  3S1D A;  3FW8 A;  2P4P A;  4BC9 A;  2UUU A;  3C0P A;  4PVE A;  1I19 A;  3S1C A;  4JAY A;  5D79 A;  1SB3 B;  1WVF A;  1N63 C;  1AHZ A;  3NVY B;  1FO4 A;  5I1W A;  5AE1 A;  1FFV C;  2VFS A;  4MLA A;  5AE3 A;  2Y08 A;  5L6F A;  1FIQ B;  2BVG A;  5FXD A;  4OAL A;  4BBY A;  2BVH A;  1RM6 B;  1QLU A;  1WYG A;  3HRD C;  1E8G A;  2W3S A;  4PYT A;  2VFV A;  3AMZ A;  3I99 A;  4UD8 A;  4O95 A;  1W1R A;  2PLI A;  1W1Q A;  3PM9 A;  5HHZ A;  3ETR B;  1VAO A;  2O3G A;  3D2J A;  4PWB A;  1JRP A;  1F0X A;  1ZR6 A;  3FW9 A;  3GSY A;  2EXR A;  3D2H A;  2Y3R A;  1W1J A;  4PVK A;  2E3T A;  1QLT A;  1E8H A;  2AXR A;  3W8X A;  2P13 A;  1W1K A;  1N5W C;  1JRO A;  1AHU A;  5AE2 A;  3W8W A;  2Q85 A;  2UUV A;  5HQX A;  1DII A;  2VFU A;  4PVH A;  4BCA A;  3JS8 A;  1MBB A;  2GQT A;  5FXF A;  1WVE A;  3NVZ B;  1N61 C;  3EJB B;  1E8F A;  5FXP A;  5FXE A;  1T3Q C;  2Q4W A;  4ML8 A;  2PLS A;  2RK5 A;  4HG0 A;  5I1V A;  4PVJ A;  4DNS A;  1ZXI C;  2W55 A;  5L6G A;  3EUB 3;  4PZF A;  3NS1 B;  5AWV A;  5K8E A;  2QKN A;  5G5H B;  1DZN A;  1E0Y A;  2I0K A;  3DQ0 A;  3KJM A;  3RJ8 A;  1W1S A;  1W1L A;  1N5X A;  4BC7 A;  2NQW A;  2W54 A;  2MBR A;  5HMR A;  2VFT A;  4ZOH B;  4XLO A;  2IPI A;  3D2D A; 
#chains in the Genus database with same CATH homology
 3LLB A;  1HSK A;  5G5G B;  3NRZ B;  2OAI A;  2VAO A;  1V97 A;  3S1E A;  3VTE A;  2GQU A;  3FWA A;  1FFU C;  3TSH A;  3B9J B;  4EC3 A;  4JB1 A;  2Y4G A;  3BW7 A;  3DED A;  2YVS A;  1UXY A;  2WDW A;  2Y3S A;  3HSU A;  1DIQ A;  2W3R A;  3TSJ A;  2R8D A;  1AHV A;  1VDV A;  3W8Z A;  2VFR A;  5ADZ A;  3AN1 A;  1N60 C;  2P3H A;  3NVV B;  3S1F A;  2R2Z A;  3TX1 A;  1W1M A;  1W1O A;  3RJA A;  2QPM A;  4PWC A;  3FW7 A;  2BVF A;  3POP A;  1N62 C;  3LAE A;  3AM9 A;  1MBT A;  3PQB A;  3SR6 B;  3NVW B;  3S1D A;  3FW8 A;  2P4P A;  4BC9 A;  2UUU A;  3C0P A;  4PVE A;  1I19 A;  3S1C A;  4JAY A;  5D79 A;  1SB3 B;  1WVF A;  1N63 C;  1AHZ A;  1FO4 A;  3NVY B;  5I1W A;  5AE1 A;  1FFV C;  2VFS A;  4MLA A;  5AE3 A;  2Y08 A;  5L6F A;  1FIQ B;  2BVG A;  5FXD A;  4OAL A;  4BBY A;  2BVH A;  1RM6 B;  1QLU A;  1WYG A;  3HRD C;  1E8G A;  2W3S A;  4PYT A;  2VFV A;  3AMZ A;  3I99 A;  4UD8 A;  4O95 A;  1W1R A;  2PLI A;  1W1Q A;  3PM9 A;  5HHZ A;  3ETR B;  1VAO A;  2O3G A;  3D2J A;  4PWB A;  1JRP A;  1F0X A;  1ZR6 A;  3FW9 A;  3GSY A;  2EXR A;  3D2H A;  2Y3R A;  1W1J A;  4PVK A;  2E3T A;  1QLT A;  1E8H A;  2AXR A;  3W8X A;  2P13 A;  1W1K A;  1N5W C;  1JRO A;  1AHU A;  5AE2 A;  3W8W A;  2Q85 A;  2UUV A;  5HQX A;  1DII A;  2VFU A;  4PVH A;  4BCA A;  3JS8 A;  1MBB A;  2GQT A;  5FXF A;  1WVE A;  3NVZ B;  1N61 C;  1E8F A;  5FXP A;  5FXE A;  1T3Q C;  2Q4W A;  4ML8 A;  2PLS A;  2RK5 A;  4HG0 A;  5I1V A;  4PVJ A;  4DNS A;  1ZXI C;  2W55 A;  5L6G A;  3EUB 3;  4PZF A;  3NS1 B;  5AWV A;  5K8E A;  2QKN A;  5G5H B;  1DZN A;  1E0Y A;  2I0K A;  3DQ0 A;  3KJM A;  3RJ8 A;  1W1S A;  1W1L A;  1N5X A;  4BC7 A;  2NQW A;  2W54 A;  2MBR A;  5HMR A;  2VFT A;  4ZOH B;  4XLO A;  2IPI A;  3D2D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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