1DIQA

Crystal structure of p-cresol methylhydroxylase with substrate bound
Total Genus 182
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
182
sequence length
515
structure length
515
Chain Sequence
AVLPKGVTQGEFNKAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAAPVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYTPYGEHFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVLHKYGLDYVAEFIVAPRDMHHVIDVLYDRTNPEETKRADACFNELLDEFEKEGYAVYRVNTRFQDRVAQSYGPVKRKLEHAIKRAVDPNNILAPGRSGIDLNNDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords P-CRESOL METHYLHYDROXYLASE
publication title Structures of the flavocytochrome p-cresol methylhydroxylase and its enzyme-substrate complex: gated substrate entry and proton relays support the proposed catalytic mechanism.
pubmed doi rcsb
molecule tags Oxidoreductase
total genus 182
structure length 515
sequence length 515
chains with identical sequence B
ec nomenclature ec 1.17.9.1: 4-methylphenol dehydrogenase (hydroxylating).
pdb deposition date 1999-11-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF02913 FAD-oxidase_C FAD linked oxidases, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.45.10 Mainly Alpha Orthogonal Bundle Vanillyl-alcohol Oxidase; Chain A, domain 4 Vanillyl-alcohol Oxidase; Chain A, domain 4 1diqA04
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 1diqA02
3.30.465.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 1diqA03
3.40.462.10 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 FAD-linked oxidases, C-terminal domain 1diqA01
3HRDC 2I0KA 1T3QC 4PWBA 3S1FA 2W55A 2R8DA 2VFUA 2P13A 5AE1A 5FXDA 3I99A 2W3SA 1E0YA 1E8FA 1W1RA 1WVEA 1QLUA 4O95A 4PZFA 5HQXA 1SB3B 4BCAA 1E8HA 2Q4WA 3FW7A 1UXYA 4BBYA 4PYTA 1FFVC 1MBBA 5G5HB 5FXFA 1E8GA 2Q85A 2R2ZA 2OAIA 3NVYB 1WYGA 2EXRA 3B9JB 1N61C 1W1KA 4DNSA 3ETRB 3NVZB 2PLIA 1VDVA 4PVEA 1N62C 1V97A 3FW8A 4ML8A 3DQ0A 4JB1A 2NQWA 3KJMA 2VFRA 1RM6B 3NVWB 1N63C 3D2HA 3C0PA 3W8XA 3FWAA 1DZNA 3LAEA 3D2JA 4MLAA 2O3GA 2YVSA 1W1MA 2VFSA 1WVFA 3LLBA 2VFTA 1FFUC 3FW9A 2BVFA 1W1OA 2QPMA 3NRZB 3DEDA 5G5GB 4HG0A 1W1QA 3EUB3 2PLSA 4PVJA 2W3RA 4BC9A 1HSKA 2P4PA 2AXRA 4PVKA 5D79A 3S1EA 1FO4A 3VTEA 3NS1B 4UD8A 1I19A 4PWCA 1QLTA 1ZXIC 3S1DA 3SR6B 3PM9A 5HMRA 2BVGA 1AHZA 2E3TA 1AHVA 3TSJA 1MBTA 3AM9A 2RK5A 2MBRA 3D2DA 1W1JA 4EC3A 1W1SA 3NVVB 1F0XA 4XLOA 1JRPA 3AN1A 3TX1A 5ADZA 2GQTA 5AE3A 1ZR6A 2VAOA 1N60C 3W8WA 1VAOA 2VFVA 1JROA 3BW7A 4PVHA 5FXEA 4BC7A 1W1LA 5FXPA 1N5XA 3W8ZA 1N5WC 5HHZA 3JS8A 4JAYA 1DIIA 1DIQA 3TSHA 4ZOHB 1AHUA 2BVHA 1FIQB 3GSYA 4OALA 3AMZA 5AE2A 2P3HA 2QKNA 2GQUA 3S1CA 2W54A
chains in the Genus database with same CATH superfamily
3PQBA 2Y3SA 3HRDC 2I0KA 1T3QC 4PWBA 3S1FA 2W55A 2R8DA 2VFUA 2P13A 5AE1A 5FXDA 3I99A 2W3SA 1E0YA 5K8EA 1E8FA 1W1RA 1WVEA 1QLUA 4O95A 4PZFA 3POPA 5HQXA 1SB3B 4BCAA 1E8HA 5L6GA 2Q4WA 3FW7A 2WDWA 1UXYA 4BBYA 4PYTA 1FFVC 1MBBA 5G5HB 5FXFA 1E8GA 2Q85A 2R2ZA 2OAIA 3NVYB 1WYGA 2EXRA 3B9JB 1N61C 1W1KA 4DNSA 3ETRB 3NVZB 2PLIA 1VDVA 3EJBB 4PVEA 1N62C 1V97A 3FW8A 4ML8A 3DQ0A 4JB1A 3EJDB 2NQWA 3RJ8A 3KJMA 2VFRA 1RM6B 3NVWB 1N63C 3D2HA 3HSUA 3C0PA 3W8XA 2Y08A 3FWAA 5L6FA 1DZNA 3LAEA 3D2JA 4MLAA 2IPIA 2O3GA 2Y3RA 2YVSA 1W1MA 2VFSA 1WVFA 3LLBA 2VFTA 1FFUC 3FW9A 2BVFA 1W1OA 2QPMA 3NRZB 3DEDA 5G5GB 4HG0A 1W1QA 3EUB3 2PLSA 4PVJA 2W3RA 4BC9A 1HSKA 3EJEB 2P4PA 2UUUA 2AXRA 4PVKA 5D79A 3RJAA 3S1EA 1FO4A 3VTEA 3NS1B 4UD8A 1I19A 4PWCA 1QLTA 1ZXIC 5I1WA 3S1DA 3SR6B 3PM9A 5HMRA 2BVGA 1AHZA 2E3TA 1AHVA 3TSJA 1MBTA 3AM9A 2UUVA 2RK5A 2MBRA 3D2DA 1W1JA 4EC3A 1W1SA 3NVVB 1F0XA 4XLOA 1JRPA 3AN1A 3TX1A 5ADZA 2GQTA 5I1VA 5AE3A 1ZR6A 2VAOA 1N60C 3W8WA 1VAOA 2VFVA 1JROA 3BW7A 4PVHA 5FXEA 2Y4GA 4BC7A 5AWVA 1W1LA 5FXPA 1N5XA 3W8ZA 1N5WC 5HHZA 3JS8A 4JAYA 1DIIA 1DIQA 3TSHA 4ZOHB 1AHUA 2BVHA 1FIQB 3GSYA 4OALA 3AMZA 5AE2A 2P3HA 2QKNA 2GQUA 3S1CA 2W54A
chains in the Genus database with same CATH topology
3PQBA 2Y3SA 3HRDC 2I0KA 1T3QC 4PWBA 3S1FA 2W55A 2R8DA 2VFUA 2P13A 5AE1A 5FXDA 3I99A 2W3SA 1E0YA 5K8EA 1E8FA 1W1RA 1WVEA 1QLUA 4O95A 4PZFA 3POPA 5HQXA 1SB3B 4BCAA 1E8HA 5L6GA 2Q4WA 3FW7A 2WDWA 1UXYA 4BBYA 4PYTA 1FFVC 1MBBA 5G5HB 5FXFA 1E8GA 2Q85A 2R2ZA 2OAIA 3NVYB 1WYGA 2EXRA 3B9JB 1N61C 1W1KA 4DNSA 3ETRB 3NVZB 2PLIA 1VDVA 4PVEA 1N62C 1V97A 3FW8A 4ML8A 3DQ0A 4JB1A 2NQWA 3RJ8A 3KJMA 2VFRA 1RM6B 3NVWB 1N63C 3D2HA 3HSUA 3C0PA 3W8XA 2Y08A 3FWAA 5L6FA 1DZNA 3LAEA 3D2JA 4MLAA 2IPIA 2O3GA 2Y3RA 2YVSA 1W1MA 2VFSA 1WVFA 3LLBA 2VFTA 1FFUC 3FW9A 2BVFA 1W1OA 2QPMA 3NRZB 3DEDA 5G5GB 4HG0A 1W1QA 3EUB3 2PLSA 4PVJA 2W3RA 4BC9A 1HSKA 2P4PA 2UUUA 2AXRA 4PVKA 5D79A 3RJAA 3S1EA 1FO4A 3VTEA 3NS1B 4UD8A 1I19A 4PWCA 1QLTA 1ZXIC 5I1WA 3S1DA 3SR6B 3PM9A 5HMRA 2BVGA 1AHZA 2E3TA 1AHVA 3TSJA 1MBTA 3AM9A 2UUVA 2RK5A 2MBRA 3D2DA 1W1JA 4EC3A 1W1SA 3NVVB 1F0XA 4XLOA 1JRPA 3AN1A 3TX1A 5ADZA 2GQTA 5I1VA 5AE3A 1ZR6A 2VAOA 1N60C 3W8WA 1VAOA 2VFVA 1JROA 3BW7A 4PVHA 5FXEA 2Y4GA 4BC7A 5AWVA 1W1LA 5FXPA 1N5XA 3W8ZA 1N5WC 5HHZA 3JS8A 4JAYA 1DIIA 1DIQA 3TSHA 4ZOHB 1AHUA 2BVHA 1FIQB 3GSYA 4OALA 3AMZA 5AE2A 2P3HA 2QKNA 2GQUA 3S1CA 2W54A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HRD C;  2I0K A;  1T3Q C;  4PWB A;  3S1F A;  2W55 A;  2R8D A;  2VFU A;  2P13 A;  5AE1 A;  5FXD A;  3I99 A;  2W3S A;  1E0Y A;  1E8F A;  1W1R A;  1WVE A;  1QLU A;  4O95 A;  4PZF A;  5HQX A;  1SB3 B;  4BCA A;  1E8H A;  2Q4W A;  3FW7 A;  1UXY A;  4BBY A;  4PYT A;  1FFV C;  1MBB A;  5G5H B;  5FXF A;  1E8G A;  2Q85 A;  2R2Z A;  2OAI A;  3NVY B;  1WYG A;  2EXR A;  3B9J B;  1N61 C;  1W1K A;  4DNS A;  3ETR B;  3NVZ B;  2PLI A;  1VDV A;  4PVE A;  1N62 C;  1V97 A;  3FW8 A;  4ML8 A;  3DQ0 A;  4JB1 A;  2NQW A;  3KJM A;  2VFR A;  1RM6 B;  3NVW B;  1N63 C;  3D2H A;  3C0P A;  3W8X A;  3FWA A;  1DZN A;  3LAE A;  3D2J A;  4MLA A;  2O3G A;  2YVS A;  1W1M A;  2VFS A;  1WVF A;  3LLB A;  2VFT A;  1FFU C;  3FW9 A;  2BVF A;  1W1O A;  2QPM A;  3NRZ B;  3DED A;  5G5G B;  4HG0 A;  1W1Q A;  3EUB 3;  2PLS A;  4PVJ A;  2W3R A;  4BC9 A;  1HSK A;  2P4P A;  2AXR A;  4PVK A;  5D79 A;  3S1E A;  1FO4 A;  3VTE A;  3NS1 B;  4UD8 A;  1I19 A;  4PWC A;  1QLT A;  1ZXI C;  3S1D A;  3SR6 B;  3PM9 A;  5HMR A;  2BVG A;  1AHZ A;  2E3T A;  1AHV A;  3TSJ A;  1MBT A;  3AM9 A;  2RK5 A;  2MBR A;  3D2D A;  1W1J A;  4EC3 A;  1W1S A;  3NVV B;  1F0X A;  4XLO A;  1JRP A;  3AN1 A;  3TX1 A;  5ADZ A;  2GQT A;  5AE3 A;  1ZR6 A;  2VAO A;  1N60 C;  3W8W A;  1VAO A;  2VFV A;  1JRO A;  3BW7 A;  4PVH A;  5FXE A;  4BC7 A;  1W1L A;  5FXP A;  1N5X A;  3W8Z A;  1N5W C;  5HHZ A;  3JS8 A;  4JAY A;  1DII A;  1DIQ A;  3TSH A;  4ZOH B;  1AHU A;  2BVH A;  1FIQ B;  3GSY A;  4OAL A;  3AMZ A;  5AE2 A;  2P3H A;  2QKN A;  2GQU A;  3S1C A;  2W54 A; 
#chains in the Genus database with same CATH topology
 3PQB A;  2Y3S A;  3HRD C;  2I0K A;  1T3Q C;  4PWB A;  3S1F A;  2W55 A;  2R8D A;  2VFU A;  2P13 A;  5AE1 A;  5FXD A;  3I99 A;  2W3S A;  1E0Y A;  5K8E A;  1E8F A;  1W1R A;  1WVE A;  1QLU A;  4O95 A;  4PZF A;  3POP A;  5HQX A;  1SB3 B;  4BCA A;  1E8H A;  5L6G A;  2Q4W A;  3FW7 A;  2WDW A;  1UXY A;  4BBY A;  4PYT A;  1FFV C;  1MBB A;  5G5H B;  5FXF A;  1E8G A;  2Q85 A;  2R2Z A;  2OAI A;  3NVY B;  1WYG A;  2EXR A;  3B9J B;  1N61 C;  1W1K A;  4DNS A;  3ETR B;  3NVZ B;  2PLI A;  1VDV A;  3EJB B;  4PVE A;  1N62 C;  1V97 A;  3FW8 A;  4ML8 A;  3DQ0 A;  4JB1 A;  3EJD B;  2NQW A;  3RJ8 A;  3KJM A;  2VFR A;  1RM6 B;  3NVW B;  1N63 C;  3D2H A;  3HSU A;  3C0P A;  3W8X A;  2Y08 A;  3FWA A;  5L6F A;  1DZN A;  3LAE A;  3D2J A;  4MLA A;  2IPI A;  2O3G A;  2Y3R A;  2YVS A;  1W1M A;  2VFS A;  1WVF A;  3LLB A;  2VFT A;  1FFU C;  3FW9 A;  2BVF A;  1W1O A;  2QPM A;  3NRZ B;  3DED A;  5G5G B;  4HG0 A;  1W1Q A;  3EUB 3;  2PLS A;  4PVJ A;  2W3R A;  4BC9 A;  1HSK A;  3EJE B;  2P4P A;  2UUU A;  2AXR A;  4PVK A;  5D79 A;  3RJA A;  3S1E A;  1FO4 A;  3VTE A;  3NS1 B;  4UD8 A;  1I19 A;  4PWC A;  1QLT A;  1ZXI C;  5I1W A;  3S1D A;  3SR6 B;  3PM9 A;  5HMR A;  2BVG A;  1AHZ A;  2E3T A;  1AHV A;  3TSJ A;  1MBT A;  3AM9 A;  2UUV A;  2RK5 A;  2MBR A;  3D2D A;  1W1J A;  4EC3 A;  1W1S A;  3NVV B;  1F0X A;  4XLO A;  1JRP A;  3AN1 A;  3TX1 A;  5ADZ A;  2GQT A;  5I1V A;  5AE3 A;  1ZR6 A;  2VAO A;  1N60 C;  3W8W A;  1VAO A;  2VFV A;  1JRO A;  3BW7 A;  4PVH A;  5FXE A;  2Y4G A;  4BC7 A;  5AWV A;  1W1L A;  5FXP A;  1N5X A;  3W8Z A;  1N5W C;  5HHZ A;  3JS8 A;  4JAY A;  1DII A;  1DIQ A;  3TSH A;  4ZOH B;  1AHU A;  2BVH A;  1FIQ B;  3GSY A;  4OAL A;  3AMZ A;  5AE2 A;  2P3H A;  2QKN A;  2GQU A;  3S1C A;  2W54 A; 
#chains in the Genus database with same CATH homology
 3PQB A;  2Y3S A;  3HRD C;  2I0K A;  1T3Q C;  4PWB A;  3S1F A;  2W55 A;  2R8D A;  2VFU A;  2P13 A;  5AE1 A;  5FXD A;  3I99 A;  2W3S A;  1E0Y A;  5K8E A;  1E8F A;  1W1R A;  1WVE A;  1QLU A;  4O95 A;  4PZF A;  3POP A;  5HQX A;  1SB3 B;  4BCA A;  1E8H A;  5L6G A;  2Q4W A;  3FW7 A;  2WDW A;  1UXY A;  4BBY A;  4PYT A;  1FFV C;  1MBB A;  5G5H B;  5FXF A;  1E8G A;  2Q85 A;  2R2Z A;  2OAI A;  3NVY B;  1WYG A;  2EXR A;  3B9J B;  1N61 C;  1W1K A;  4DNS A;  3ETR B;  3NVZ B;  2PLI A;  1VDV A;  4PVE A;  1N62 C;  1V97 A;  3FW8 A;  4ML8 A;  3DQ0 A;  4JB1 A;  2NQW A;  3RJ8 A;  3KJM A;  2VFR A;  1RM6 B;  3NVW B;  1N63 C;  3D2H A;  3HSU A;  3C0P A;  3W8X A;  2Y08 A;  3FWA A;  5L6F A;  1DZN A;  3LAE A;  3D2J A;  4MLA A;  2IPI A;  2O3G A;  2Y3R A;  2YVS A;  1W1M A;  2VFS A;  1WVF A;  3LLB A;  2VFT A;  1FFU C;  3FW9 A;  2BVF A;  1W1O A;  2QPM A;  3NRZ B;  3DED A;  5G5G B;  4HG0 A;  1W1Q A;  3EUB 3;  2PLS A;  4PVJ A;  2W3R A;  4BC9 A;  1HSK A;  2P4P A;  2UUU A;  2AXR A;  4PVK A;  5D79 A;  3RJA A;  3S1E A;  1FO4 A;  3VTE A;  3NS1 B;  4UD8 A;  1I19 A;  4PWC A;  1QLT A;  1ZXI C;  5I1W A;  3S1D A;  3SR6 B;  3PM9 A;  5HMR A;  2BVG A;  1AHZ A;  2E3T A;  1AHV A;  3TSJ A;  1MBT A;  3AM9 A;  2UUV A;  2RK5 A;  2MBR A;  3D2D A;  1W1J A;  4EC3 A;  1W1S A;  3NVV B;  1F0X A;  4XLO A;  1JRP A;  3AN1 A;  3TX1 A;  5ADZ A;  2GQT A;  5I1V A;  5AE3 A;  1ZR6 A;  2VAO A;  1N60 C;  3W8W A;  1VAO A;  2VFV A;  1JRO A;  3BW7 A;  4PVH A;  5FXE A;  2Y4G A;  4BC7 A;  5AWV A;  1W1L A;  5FXP A;  1N5X A;  3W8Z A;  1N5W C;  5HHZ A;  3JS8 A;  4JAY A;  1DII A;  1DIQ A;  3TSH A;  4ZOH B;  1AHU A;  2BVH A;  1FIQ B;  3GSY A;  4OAL A;  3AMZ A;  5AE2 A;  2P3H A;  2QKN A;  2GQU A;  3S1C A;  2W54 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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