1DRTA

Crystal structure of clavaminate synthase in complex with fe(ii), 2-oxoglutarate and proclavaminic acid
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
323
structure length
315
Chain Sequence
TSVDCTAYGPELRALAARLPRTPRADLYAFLDAAHTAAASLPGALATALDTFNAEGSEDGHLLLRGLPVEADADLPTTPSSTPAPEDRSLLTMEAMLGLVGRRLGLHTGYRELRSGTVYHDVYPSPGAHHLSSETSETLLEFHTEMAYHRLQPNYVMLACSRADHERTAATLVASVRKALPLLDERTRARLLDRRMPCCVDVAFRIAQVKPLYGDADDPFLGYDRELLAPEDPADKEAVAALSKALDEVTEAVYLEPGDLLIVDNFRTTHARTPFSPRWDGKDRWLHRVYIRTDRNGQLSGGERAGDVVAFTPRG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase,lyase
molecule keywords CLAVAMINATE SYNTHASE 1
publication title Structural origins of the selectivity of the trifunctional oxygenase clavaminic acid synthase.
pubmed doi rcsb
source organism Streptomyces clavuligerus
total genus 103
structure length 315
sequence length 323
ec nomenclature ec 1.14.11.21: Clavaminate synthase.
pdb deposition date 2000-01-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 1drtA00
3V15A 5J92A 1JR7A 4M2FA 4BHIA 1DS0A 4M25A 1OS7A 3V17A 4CVYA 1GVGA 4BHGA 4M2EA 1DRTA 4M27A 1OIKA 1Y0ZA 4M2GA 3PVJA 1OTJA 1OIJA 1OIJC 3O2GA 4M26A 2R6SA 2OG5A 4BHFA 4Y0EA 2OG6A 5KEUA 1GY9A 4FFAA 1NX4A 1OIJB 2WBOA 4NE0A 1VZ5A 2WBQA 4M2CA 1VZ4A 2OG7A 1GQWA 1DS1A 3EATX 3N6WA 4BGKA 4CWDA 4OJ8A 2WBPA 3R1JA 1NX8A 4BG1A 3SWTA 5HSXA 2Q4AA 4M23A 1OIIA 1OIHA 4YLMX 1DRYA 4C5WA 4BGMA 4J5IA 4C8RA 3MS5A 4M2IA
chains in the Genus database with same CATH superfamily
3V15A 5J92A 1JR7A 4M2FA 4BHIA 1DS0A 1PG6A 4M25A 1OS7A 3V17A 4CVYA 1GVGA 4BHGA 4M2EA 1DRTA 4M27A 1OIKA 1Y0ZA 4M2GA 3PVJA 1OTJA 1OIJA 1OIJC 3O2GA 4M26A 2R6SA 2OG5A 4BHFA 4Y0EA 2OG6A 5KEUA 1GY9A 4FFAA 1NX4A 1OIJB 2WBOA 4NE0A 1VZ5A 2WBQA 4M2CA 1VZ4A 2OG7A 1GQWA 1DS1A 3EATX 3N6WA 4BGKA 4CWDA 4OJ8A 2WBPA 3R1JA 1NX8A 1YOXA 4BG1A 5HSXA 2Q4AA 4M23A 3SWTA 1OIIA 1OIHA 4YLMX 1DRYA 4C5WA 4BGMA 4J5IA 4C8RA 3MS5A 4M2IA
chains in the Genus database with same CATH topology
5J92A 1JR7A 2W0XA 4CVYA 4BHGA 4M2EA 1OTJA 4BHFA 4NR1A 2CGNA 1MZEA 1OIJB 3P3NA 4M2CA 1H2KA 2OG7A 1GQWA 4CWDA 4OJ8A 2WBPA 2Q4AA 3KCYA 1IZ3A 1OIIA 2CGOA 4BGMA 1DS0A 1OS7A 3PVJA 3O2GA 2WA3A 1OIJC 4Y0EA 4Z1VA 1H2NA 5KEUA 4B7EA 2YDEA 1NX4A 2XUMA 1VZ5A 4NE0A 1H2LA 3EATX 3N6WA 2Y0IA 2YC0A 1H2MA 4M23A 4YLMX 4Z2WA 1MZFA 4J5IA 3MS5A 4M2IA 3V15A 4M2FA 4BIOA 4M27A 1YCIA 1OIKA 1Y0ZA 3KCXA 1GY9A 4FFAA 2WBOA 4AI8A 2WBQA 4BGKA 4BG1A 3SWTA 5HSXA 1OIHA 4C5WA 4C8RA 4BHIA 2WA4A 4JAAA 3P3PA 4M25A 4B7KA 3V17A 5JWPA 1GVGA 1DRTA 4M2GA 1OIJA 4M26A 2R6SA 2OG5A 2OG6A 1VZ4A 1DS1A 3D8CA 3R1JA 1NX8A 1DRYA 2ILMA 3OD4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V15 A;  5J92 A;  1JR7 A;  4M2F A;  4BHI A;  1DS0 A;  4M25 A;  1OS7 A;  3V17 A;  4CVY A;  1GVG A;  4BHG A;  4M2E A;  1DRT A;  4M27 A;  1OIK A;  1Y0Z A;  4M2G A;  3PVJ A;  1OTJ A;  1OIJ A;  1OIJ C;  3O2G A;  4M26 A;  2R6S A;  2OG5 A;  4BHF A;  4Y0E A;  2OG6 A;  5KEU A;  1GY9 A;  4FFA A;  1NX4 A;  1OIJ B;  2WBO A;  4NE0 A;  1VZ5 A;  2WBQ A;  4M2C A;  1VZ4 A;  2OG7 A;  1GQW A;  1DS1 A;  3EAT X;  3N6W A;  4BGK A;  4CWD A;  4OJ8 A;  2WBP A;  3R1J A;  1NX8 A;  4BG1 A;  3SWT A;  5HSX A;  2Q4A A;  4M23 A;  1OII A;  1OIH A;  4YLM X;  1DRY A;  4C5W A;  4BGM A;  4J5I A;  4C8R A;  3MS5 A;  4M2I A; 
#chains in the Genus database with same CATH topology
 3V15 A;  5J92 A;  1JR7 A;  4M2F A;  4BHI A;  1DS0 A;  1PG6 A;  4M25 A;  1OS7 A;  3V17 A;  4CVY A;  1GVG A;  4BHG A;  4M2E A;  1DRT A;  4M27 A;  1OIK A;  1Y0Z A;  4M2G A;  3PVJ A;  1OTJ A;  1OIJ A;  1OIJ C;  3O2G A;  4M26 A;  2R6S A;  2OG5 A;  4BHF A;  4Y0E A;  2OG6 A;  5KEU A;  1GY9 A;  4FFA A;  1NX4 A;  1OIJ B;  2WBO A;  4NE0 A;  1VZ5 A;  2WBQ A;  4M2C A;  1VZ4 A;  2OG7 A;  1GQW A;  1DS1 A;  3EAT X;  3N6W A;  4BGK A;  4CWD A;  4OJ8 A;  2WBP A;  3R1J A;  1NX8 A;  1YOX A;  4BG1 A;  5HSX A;  2Q4A A;  4M23 A;  3SWT A;  1OII A;  1OIH A;  4YLM X;  1DRY A;  4C5W A;  4BGM A;  4J5I A;  4C8R A;  3MS5 A;  4M2I A; 
#chains in the Genus database with same CATH homology
 5J92 A;  1JR7 A;  2W0X A;  4CVY A;  4BHG A;  4M2E A;  1OTJ A;  4BHF A;  4NR1 A;  2CGN A;  1MZE A;  1OIJ B;  3P3N A;  4M2C A;  1H2K A;  2OG7 A;  1GQW A;  4CWD A;  4OJ8 A;  2WBP A;  2Q4A A;  3KCY A;  1IZ3 A;  1OII A;  2CGO A;  4BGM A;  1DS0 A;  1OS7 A;  3PVJ A;  3O2G A;  2WA3 A;  1OIJ C;  4Y0E A;  4Z1V A;  1H2N A;  5KEU A;  4B7E A;  2YDE A;  1NX4 A;  2XUM A;  1VZ5 A;  4NE0 A;  1H2L A;  3EAT X;  3N6W A;  2Y0I A;  2YC0 A;  1H2M A;  4M23 A;  4YLM X;  4Z2W A;  1MZF A;  4J5I A;  3MS5 A;  4M2I A;  3V15 A;  4M2F A;  4BIO A;  4M27 A;  1YCI A;  1OIK A;  1Y0Z A;  3KCX A;  1GY9 A;  4FFA A;  2WBO A;  4AI8 A;  2WBQ A;  4BGK A;  4BG1 A;  3SWT A;  5HSX A;  1OIH A;  4C5W A;  4C8R A;  4BHI A;  2WA4 A;  4JAA A;  3P3P A;  4M25 A;  4B7K A;  3V17 A;  5JWP A;  1GVG A;  1DRT A;  4M2G A;  1OIJ A;  4M26 A;  2R6S A;  2OG5 A;  2OG6 A;  1VZ4 A;  1DS1 A;  3D8C A;  3R1J A;  1NX8 A;  1DRY A;  2ILM A;  3OD4 A; 
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