1DS6B

Crystal structure of a rac-rhogdi complex
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
179
structure length
179
Chain Sequence
GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 2
publication title The Rac-RhoGDI complex and the structural basis for the regulation of Rho proteins by RhoGDI.
pubmed doi rcsb
source organism Homo sapiens
total genus 38
structure length 179
sequence length 179
ec nomenclature
pdb deposition date 2000-01-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.30 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 Coagulation Factor XIII, subunit A, domain 1 1ds6B00
1FT0A 2JHZA 2JHSA 2JHYA 2JHXA 1FSTA 1DS6B 2JI0A 1QVYA 2JHWA 2BXWA 2JHUA 2JHTA 1AJWA 1FSOA 1DOAB 1HH4D 2JHVA 1GDFA 4F38B 1FT3A 1KMTA 1RHOA
chains in the Genus database with same CATH superfamily
3RBQA 1FT0A 2BENA 4RE1A 2JHSA 3JUAA 4GOKC 5HNPA 1FSTA 4OY6A 4ALSA 4JHPB 1AJWA 4MAHA 2LHSA 4JV6B 3KYSA 5ACHA 2YOXA 1HH4D 5E80A 5ACIA 1GDFA 5F2UA 4JVBB 2YOYA 4OY7A 5TB5B 4F38B 5FOHA 4JVFB 5FTZA 1RHOA 4ALEA 2JHXA 4A02A 3UAMA 2JI0A 1KSHB 4ALRA 5HNOA 1FSOA 2R5OA 3ZUDA 3EIIA 3GQQA 5EMVA 1FT3A 2YETA 2XWXA 5TARB 5IJUA 2JHYA 4D7UA 4EIRA 4MAIA 2JHWA 2JHTA 3EJAA 4FMRA 4LN0A 5AA7A 2BEMA 2JHVA 4ALTA 2YOWA 4EISA 5FJQA 2VTCA 5ACGA 4ALCA 5ACJA 5DQEA 2JHZA 4B5QA 4EISB 3L15A 4GOJC 5E8FA 1KSJB 1DS6B 5L7KA 1QVYA 5ACFA 4QI8A 2BXWA 2JHUA 1KSGB 4ALQA 1DOAB 4D7VA 3T5IA 3T5GB 5HGUA 4GBOA 5DQ8A 4OY8A 5EMWA 4JV8B 1KMTA
chains in the Genus database with same CATH topology
1FT0A 2JHZA 2JHSA 2JHYA 2JHXA 1FSTA 1DS6B 2JI0A 1QVYA 2JHWA 2BXWA 2JHUA 2JHTA 1AJWA 1FSOA 1DOAB 1HH4D 2JHVA 1GDFA 4F38B 1FT3A 1KMTA 1RHOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FT0 A;  2JHZ A;  2JHS A;  2JHY A;  2JHX A;  1FST A;  1DS6 B;  2JI0 A;  1QVY A;  2JHW A;  2BXW A;  2JHU A;  2JHT A;  1AJW A;  1FSO A;  1DOA B;  1HH4 D;  2JHV A;  1GDF A;  4F38 B;  1FT3 A;  1KMT A;  1RHO A; 
#chains in the Genus database with same CATH topology
 3RBQ A;  1FT0 A;  2BEN A;  4RE1 A;  2JHS A;  3JUA A;  4GOK C;  5HNP A;  1FST A;  4OY6 A;  4ALS A;  4JHP B;  1AJW A;  4MAH A;  2LHS A;  4JV6 B;  3KYS A;  5ACH A;  2YOX A;  1HH4 D;  5E80 A;  5ACI A;  1GDF A;  5F2U A;  4JVB B;  2YOY A;  4OY7 A;  5TB5 B;  4F38 B;  5FOH A;  4JVF B;  5FTZ A;  1RHO A;  4ALE A;  2JHX A;  4A02 A;  3UAM A;  2JI0 A;  1KSH B;  4ALR A;  5HNO A;  1FSO A;  2R5O A;  3ZUD A;  3EII A;  3GQQ A;  5EMV A;  1FT3 A;  2YET A;  2XWX A;  5TAR B;  5IJU A;  2JHY A;  4D7U A;  4EIR A;  4MAI A;  2JHW A;  2JHT A;  3EJA A;  4FMR A;  4LN0 A;  5AA7 A;  2BEM A;  2JHV A;  4ALT A;  2YOW A;  4EIS A;  5FJQ A;  2VTC A;  5ACG A;  4ALC A;  5ACJ A;  5DQE A;  2JHZ A;  4B5Q A;  4EIS B;  3L15 A;  4GOJ C;  5E8F A;  1KSJ B;  1DS6 B;  5L7K A;  1QVY A;  5ACF A;  4QI8 A;  2BXW A;  2JHU A;  1KSG B;  4ALQ A;  1DOA B;  4D7V A;  3T5I A;  3T5G B;  5HGU A;  4GBO A;  5DQ8 A;  4OY8 A;  5EMW A;  4JV8 B;  1KMT A; 
#chains in the Genus database with same CATH homology
 1FT0 A;  2JHZ A;  2JHS A;  2JHY A;  2JHX A;  1FST A;  1DS6 B;  2JI0 A;  1QVY A;  2JHW A;  2BXW A;  2JHU A;  2JHT A;  1AJW A;  1FSO A;  1DOA B;  1HH4 D;  2JHV A;  1GDF A;  4F38 B;  1FT3 A;  1KMT A;  1RHO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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