1DSXA

Kv1.2 t1 domain, residues 33-119, t46v mutant
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
87
structure length
87
Chain Sequence
ERVVINISGLRFEVQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords PROTEIN (KV1.2 VOLTAGE-GATED POTASSIUM CHANNEL)
publication title The polar T1 interface is linked to conformational changes that open the voltage-gated potassium channel.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 26
structure length 87
sequence length 87
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2000-01-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.710.10 Alpha Beta 2-Layer Sandwich Potassium Channel Kv1.1; Chain A Potassium Channel Kv1.1; Chain A 1dsxA00
3C6NA 1NEXA 2E32B 5DAFA 5BO4C 4CP3A 4U2NA 4U77A 3KVTA 1LM8C 1EOFA 1EODA 1LQBB 3GA1A 2E31B 3I3NA 5HZGC 4W9HH 4UIJA 1R2BA 3HU6A 4WQOC 3HVEB 2YY9A 3M8VA 4AJYC 2C9WC 2OVQA 4JTCB 2Z8HA 4BKSB 4W9FB 5DADA 3HVEA 4AP2A 5FTAA 1CS3A 2VPKA 2OVPA 4W9CB 5A15A 3ZRFB 4CXJA 1DSXA 2NN2A 2P1QA 4CXTA 5BXDA 1S1GA 4AWJB 4B95B 3M52A 1EOEA 3ZUNB 4W9LB 2ASTA 3OHUA 4APFA 4J8ZA 3BIMA 4JTAB 1NN7A 4U2MA 4W9EB 3LNMB 3MKSA 4W9DB 5BXHA 1FQVB 1R28A 1A68A 4W9KB 3ZRCB 3OGLA 4JGHC 3LBZA 1QDVA 1HV2A 4HXIA 1QDWA 5H7HA 5HYWB 1BUOA 2JZ3C 1R29A 2PPIA 3ZKJB 2P1OA 3HQIA 3M5BA 3ZTDB 5A6RA 1LDKD 2P1NA 2VKPA 3C6OA 2IZVC 5H7GA 1VCBB 3L2OA 3OGMA 4B9KE 1T1DA 3ZTCB 3LUTB 3FKCA 2R9RB 3M4TA 1P22B 5JH5B 2ASSA 5LLIB 4W9GB 4EOZA 4UYIA 2P1MA 2P1PA 4BKTB 2OVRA 3DRZA 5BXBA 3WSOB 3OGKA 3B84A 5IBKA 2NZ0B 2MA9C 4N9F5 4CRHA 5EUPA 3HTMA 1FS2B 4JTDB 4ZOUA 4BGCA 2IF5A 3V7DA 2IHCA 2A79B 1EXBE 4CXIA 1FS1B 4I6JC 3DCGB 4W9JB 4B9KB 2FNJC 3C6PA 4W9IB 4W9HB 3E4UA 3ZNGB 2I2RA 2Q81A 3OHVA
chains in the Genus database with same CATH superfamily
3C6NA 1NEXA 2E32B 5DAFA 5BO4C 4CP3A 4U2NA 4U77A 3KVTA 1LM8C 3DRYA 1EOFA 1EODA 1LQBB 3GA1A 2E31B 3I3NA 5HZGC 4W9HH 4UIJA 1R2BA 3HU6A 4WQOC 3HVEB 2YY9A 3M8VA 4AJYC 2C9WC 4YY8A 2OVQA 4JTCB 2Z8HA 4BKSB 4W9FB 4ZGCA 5DADA 3HVEA 4AP2A 5FTAA 1CS3A 2VPKA 2OVPA 4W9CB 5A15A 3ZRFB 4CXJA 1DSXA 2NN2A 2P1QA 4CXTA 5BXDA 1S1GA 4AWJB 4B95B 3M52A 1EOEA 3ZUNB 4W9LB 2ASTA 3OHUA 4APFA 4J8ZA 3BIMA 4JTAB 1NN7A 4U2MA 4W9EB 3LNMB 3MKSA 4W9DB 5BXHA 1FQVB 1R28A 1A68A 4W9KB 3ZRCB 3OGLA 4JGHC 3LBZA 1QDVA 1HV2A 4HXIA 1QDWA 5H7HA 5HYWB 1BUOA 2JZ3C 1R29A 2PPIA 3ZKJB 2P1OA 3HQIA 3M5BA 3ZTDB 5A6RA 1LDKD 2P1NA 2VKPA 3C6OA 2IZVC 5H7GA 1VCBB 3L2OA 3OGMA 4B9KE 1T1DA 3ZTCB 3LUTB 3FKCA 2R9RB 3M4TA 1P22B 5JH5B 2ASSA 5LLIB 4W9GB 4EOZA 4UYIA 2P1MA 2P1PA 4BKTB 2OVRA 3DRZA 5BXBA 3WSOB 3OGKA 3B84A 5IBKA 2NZ0B 2MA9C 4N9F5 4CRHA 5EUPA 3HTMA 3DRXA 1FS2B 4JTDB 4ZOUA 4BGCA 2IF5A 3V7DA 2IHCA 2A79B 1EXBE 4CXIA 1FS1B 4I6JC 3DCGB 4W9JB 4B9KB 2FNJC 3C6PA 4W9IB 4W9HB 3E4UA 3ZNGB 2I2RA 2Q81A 3OHVA
chains in the Genus database with same CATH topology
3C6NA 1NEXA 2E32B 5DAFA 5BO4C 4CP3A 4U2NA 4U77A 3KVTA 1LM8C 3DRYA 1EOFA 1EODA 1LQBB 3GA1A 2E31B 3I3NA 5HZGC 4W9HH 4UIJA 1R2BA 3HU6A 4WQOC 3HVEB 2YY9A 3M8VA 4AJYC 2C9WC 4YY8A 2OVQA 4JTCB 2Z8HA 4BKSB 4W9FB 4ZGCA 5DADA 3HVEA 4AP2A 5FTAA 1CS3A 2VPKA 2OVPA 4W9CB 5A15A 3ZRFB 4CXJA 1DSXA 2NN2A 2P1QA 4CXTA 5BXDA 1S1GA 4AWJB 4B95B 3M52A 1EOEA 3ZUNB 4W9LB 2ASTA 3OHUA 4APFA 4J8ZA 3BIMA 4JTAB 1NN7A 4U2MA 4W9EB 3LNMB 3MKSA 4W9DB 5BXHA 1FQVB 1R28A 1A68A 4W9KB 3ZRCB 3OGLA 4JGHC 3LBZA 1QDVA 1HV2A 4HXIA 1QDWA 5H7HA 5HYWB 1BUOA 2JZ3C 1R29A 2PPIA 3ZKJB 2P1OA 3HQIA 3M5BA 3ZTDB 5A6RA 1LDKD 2P1NA 2VKPA 3C6OA 2IZVC 5H7GA 1VCBB 3L2OA 3OGMA 4B9KE 1T1DA 3ZTCB 3LUTB 3FKCA 2R9RB 3M4TA 1P22B 5JH5B 2ASSA 5LLIB 4W9GB 4EOZA 4UYIA 2P1MA 2P1PA 4BKTB 2OVRA 3DRZA 5BXBA 3WSOB 3OGKA 3B84A 5IBKA 2NZ0B 2MA9C 4N9F5 4CRHA 5EUPA 3HTMA 3DRXA 1FS2B 4JTDB 4ZOUA 4BGCA 2IF5A 3V7DA 2IHCA 2A79B 1EXBE 4CXIA 1FS1B 4I6JC 3DCGB 4W9JB 4B9KB 2FNJC 3C6PA 4W9IB 4W9HB 3E4UA 3ZNGB 2I2RA 2Q81A 3OHVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C6N A;  1NEX A;  2E32 B;  5DAF A;  5BO4 C;  4CP3 A;  4U2N A;  4U77 A;  3KVT A;  1LM8 C;  1EOF A;  1EOD A;  1LQB B;  3GA1 A;  2E31 B;  3I3N A;  5HZG C;  4W9H H;  4UIJ A;  1R2B A;  3HU6 A;  4WQO C;  3HVE B;  2YY9 A;  3M8V A;  4AJY C;  2C9W C;  2OVQ A;  4JTC B;  2Z8H A;  4BKS B;  4W9F B;  5DAD A;  3HVE A;  4AP2 A;  5FTA A;  1CS3 A;  2VPK A;  2OVP A;  4W9C B;  5A15 A;  3ZRF B;  4CXJ A;  1DSX A;  2NN2 A;  2P1Q A;  4CXT A;  5BXD A;  1S1G A;  4AWJ B;  4B95 B;  3M52 A;  1EOE A;  3ZUN B;  4W9L B;  2AST A;  3OHU A;  4APF A;  4J8Z A;  3BIM A;  4JTA B;  1NN7 A;  4U2M A;  4W9E B;  3LNM B;  3MKS A;  4W9D B;  5BXH A;  1FQV B;  1R28 A;  1A68 A;  4W9K B;  3ZRC B;  3OGL A;  4JGH C;  3LBZ A;  1QDV A;  1HV2 A;  4HXI A;  1QDW A;  5H7H A;  5HYW B;  1BUO A;  2JZ3 C;  1R29 A;  2PPI A;  3ZKJ B;  2P1O A;  3HQI A;  3M5B A;  3ZTD B;  5A6R A;  1LDK D;  2P1N A;  2VKP A;  3C6O A;  2IZV C;  5H7G A;  1VCB B;  3L2O A;  3OGM A;  4B9K E;  1T1D A;  3ZTC B;  3LUT B;  3FKC A;  2R9R B;  3M4T A;  1P22 B;  5JH5 B;  2ASS A;  5LLI B;  4W9G B;  4EOZ A;  4UYI A;  2P1M A;  2P1P A;  4BKT B;  2OVR A;  3DRZ A;  5BXB A;  3WSO B;  3OGK A;  3B84 A;  5IBK A;  2NZ0 B;  2MA9 C;  4N9F 5;  4CRH A;  5EUP A;  3HTM A;  1FS2 B;  4JTD B;  4ZOU A;  4BGC A;  2IF5 A;  3V7D A;  2IHC A;  2A79 B;  1EXB E;  4CXI A;  1FS1 B;  4I6J C;  3DCG B;  4W9J B;  4B9K B;  2FNJ C;  3C6P A;  4W9I B;  4W9H B;  3E4U A;  3ZNG B;  2I2R A;  2Q81 A;  3OHV A; 
#chains in the Genus database with same CATH topology
 3C6N A;  1NEX A;  2E32 B;  5DAF A;  5BO4 C;  4CP3 A;  4U2N A;  4U77 A;  3KVT A;  1LM8 C;  3DRY A;  1EOF A;  1EOD A;  1LQB B;  3GA1 A;  2E31 B;  3I3N A;  5HZG C;  4W9H H;  4UIJ A;  1R2B A;  3HU6 A;  4WQO C;  3HVE B;  2YY9 A;  3M8V A;  4AJY C;  2C9W C;  4YY8 A;  2OVQ A;  4JTC B;  2Z8H A;  4BKS B;  4W9F B;  4ZGC A;  5DAD A;  3HVE A;  4AP2 A;  5FTA A;  1CS3 A;  2VPK A;  2OVP A;  4W9C B;  5A15 A;  3ZRF B;  4CXJ A;  1DSX A;  2NN2 A;  2P1Q A;  4CXT A;  5BXD A;  1S1G A;  4AWJ B;  4B95 B;  3M52 A;  1EOE A;  3ZUN B;  4W9L B;  2AST A;  3OHU A;  4APF A;  4J8Z A;  3BIM A;  4JTA B;  1NN7 A;  4U2M A;  4W9E B;  3LNM B;  3MKS A;  4W9D B;  5BXH A;  1FQV B;  1R28 A;  1A68 A;  4W9K B;  3ZRC B;  3OGL A;  4JGH C;  3LBZ A;  1QDV A;  1HV2 A;  4HXI A;  1QDW A;  5H7H A;  5HYW B;  1BUO A;  2JZ3 C;  1R29 A;  2PPI A;  3ZKJ B;  2P1O A;  3HQI A;  3M5B A;  3ZTD B;  5A6R A;  1LDK D;  2P1N A;  2VKP A;  3C6O A;  2IZV C;  5H7G A;  1VCB B;  3L2O A;  3OGM A;  4B9K E;  1T1D A;  3ZTC B;  3LUT B;  3FKC A;  2R9R B;  3M4T A;  1P22 B;  5JH5 B;  2ASS A;  5LLI B;  4W9G B;  4EOZ A;  4UYI A;  2P1M A;  2P1P A;  4BKT B;  2OVR A;  3DRZ A;  5BXB A;  3WSO B;  3OGK A;  3B84 A;  5IBK A;  2NZ0 B;  2MA9 C;  4N9F 5;  4CRH A;  5EUP A;  3HTM A;  3DRX A;  1FS2 B;  4JTD B;  4ZOU A;  4BGC A;  2IF5 A;  3V7D A;  2IHC A;  2A79 B;  1EXB E;  4CXI A;  1FS1 B;  4I6J C;  3DCG B;  4W9J B;  4B9K B;  2FNJ C;  3C6P A;  4W9I B;  4W9H B;  3E4U A;  3ZNG B;  2I2R A;  2Q81 A;  3OHV A; 
#chains in the Genus database with same CATH homology
 3C6N A;  1NEX A;  2E32 B;  5DAF A;  5BO4 C;  4CP3 A;  4U2N A;  4U77 A;  3KVT A;  1LM8 C;  3DRY A;  1EOF A;  1EOD A;  1LQB B;  3GA1 A;  2E31 B;  3I3N A;  5HZG C;  4W9H H;  4UIJ A;  1R2B A;  3HU6 A;  4WQO C;  3HVE B;  2YY9 A;  3M8V A;  4AJY C;  2C9W C;  4YY8 A;  2OVQ A;  4JTC B;  2Z8H A;  4BKS B;  4W9F B;  4ZGC A;  5DAD A;  3HVE A;  4AP2 A;  5FTA A;  1CS3 A;  2VPK A;  2OVP A;  4W9C B;  5A15 A;  3ZRF B;  4CXJ A;  1DSX A;  2NN2 A;  2P1Q A;  4CXT A;  5BXD A;  1S1G A;  4AWJ B;  4B95 B;  3M52 A;  1EOE A;  3ZUN B;  4W9L B;  2AST A;  3OHU A;  4APF A;  4J8Z A;  3BIM A;  4JTA B;  1NN7 A;  4U2M A;  4W9E B;  3LNM B;  3MKS A;  4W9D B;  5BXH A;  1FQV B;  1R28 A;  1A68 A;  4W9K B;  3ZRC B;  3OGL A;  4JGH C;  3LBZ A;  1QDV A;  1HV2 A;  4HXI A;  1QDW A;  5H7H A;  5HYW B;  1BUO A;  2JZ3 C;  1R29 A;  2PPI A;  3ZKJ B;  2P1O A;  3HQI A;  3M5B A;  3ZTD B;  5A6R A;  1LDK D;  2P1N A;  2VKP A;  3C6O A;  2IZV C;  5H7G A;  1VCB B;  3L2O A;  3OGM A;  4B9K E;  1T1D A;  3ZTC B;  3LUT B;  3FKC A;  2R9R B;  3M4T A;  1P22 B;  5JH5 B;  2ASS A;  5LLI B;  4W9G B;  4EOZ A;  4UYI A;  2P1M A;  2P1P A;  4BKT B;  2OVR A;  3DRZ A;  5BXB A;  3WSO B;  3OGK A;  3B84 A;  5IBK A;  2NZ0 B;  2MA9 C;  4N9F 5;  4CRH A;  5EUP A;  3HTM A;  3DRX A;  1FS2 B;  4JTD B;  4ZOU A;  4BGC A;  2IF5 A;  3V7D A;  2IHC A;  2A79 B;  1EXB E;  4CXI A;  1FS1 B;  4I6J C;  3DCG B;  4W9J B;  4B9K B;  2FNJ C;  3C6P A;  4W9I B;  4W9H B;  3E4U A;  3ZNG B;  2I2R A;  2Q81 A;  3OHV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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