1DVEA

Crystal structure of rat heme oxygenase-1 in complex with heme
Total Genus 86
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
86
sequence length
214
structure length
214
Chain Sequence
SQDLSEALKEATKEVHIRAENSEFMRNFQKGQVSREGFKLVMASLYHIYTALEEEIERNKQNPVYAPLYFPEELHRRAALEQDMAFWYGPHWQEAIPYTPATQHYVKRLHEVGGTHPELLVAHAYTRYLGDLSGGQVLKKIAQKAMALPSSGEGLAFFTFPSIDNPTKFKQLYRARMNTLEMTPEVKHRVTEEAKTAFLLNIELFEELQALLTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords HEME OXYGENASE-1
publication title Crystal structure of rat heme oxygenase-1 in complex with heme.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 86
structure length 214
sequence length 214
ec nomenclature ec 1.14.14.18: Heme oxygenase (biliverdin-producing).
pdb deposition date 2000-01-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01126 Heme_oxygenase Heme oxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.910.10 Mainly Alpha Up-down Bundle Heme Oxygenase; Chain A Heme oxygenase-like 1dveA00
3TGMA 1T5PA 4GPHA 1DVEA 1OZEA 1OZWA 3K4FA 4WWZA 1SK7A 4G8UA 1TWRA 1XJZA 2GM7A 3I9TA 1TO9B 4RAJA 4G8WA 4WMHA 1WOVA 3HMLA 1UBBA 1WNVA 1YAFA 1UDDA 5BTQA 1OTWA 1P3UA 3MVUA 2A6BA 3B5PA 3OQLA 1WNWA 3BJDA 1OZLA 4G99A 1IRMA 4G7PA 4G7UA 2Q4XA 1NI6A 1XK2A 1YAKA 2QPPA 1XK1A 1N45A 2E7EA 1OZRA 4FN6A 1XK0A 3CZYA 1XK3A 1N3UA 2RD3A 4G7LA 3DDEA 2Z68A 3MOOA 1J77A 1S8CA 3IBXA 1P3TA 3NO6A 1DVGA 4LQXA 1IX4A 4G98A 2DY5A 3B5OA 2A2OA 3HLXA 3I8RA 1J02A 1WZFA 1RCWA 1IW1A 1RTWA 4WD4A 1S13A 4GPFA 1WOWA 1OYLA 1IVJA 1V8XA 1IW0A 2QZCA 4G7TA 4GOHA 1WZGA 1WOXA 1WE1A 1WNXA 1TO9A 1WWMA 3HOKA 1OTVA 1OYKA 2A2MA 2ZVUA 4WX0A 1VGIA 3HNHA 4WWJA 4NY7A 1P3VA 1J2CA 1Z72A 3RM5A 1ULXA 2RGZA 1IX3A 1TWNA 4G8PA 4GPCA 1WZDA 2QCXA 2Q32A 4MECA 2GM8A 2F2GA 3I9UA 1TYHA
chains in the Genus database with same CATH superfamily
3TGMA 1T5PA 4GPHA 1DVEA 1OZEA 1OZWA 3K4FA 4WWZA 1SK7A 4G8UA 1TWRA 1XJZA 2GM7A 3I9TA 1TO9B 4RAJA 4G8WA 4WMHA 1WOVA 3HMLA 1UBBA 1WNVA 1YAFA 1UDDA 5BTQA 1OTWA 1P3UA 2LCUA 3MVUA 2A6BA 3B5PA 3OQLA 1WNWA 3BJDA 1OZLA 4G99A 1IRMA 4G7PA 4G7UA 2Q4XA 1NI6A 1XK2A 1YAKA 2QPPA 1XK1A 1N45A 2E7EA 1OZRA 4FN6A 1XK0A 3CZYA 1XK3A 1N3UA 2RD3A 4G7LA 3DDEA 2Z68A 3MOOA 1J77A 1S8CA 3IBXA 1P3TA 3NO6A 1DVGA 4LQXA 1IX4A 4G98A 2DY5A 3B5OA 2A2OA 3HLXA 3I8RA 1J02A 1WZFA 1RCWA 1IW1A 1RTWA 4WD4A 1S13A 4GPFA 1WOWA 1OYLA 1IVJA 1V8XA 1IW0A 2QZCA 4G7TA 4GOHA 1WZGA 1WOXA 1WE1A 1WNXA 1TO9A 1WWMA 3HOKA 1OTVA 1OYKA 2A2MA 2ZVUA 4WX0A 1VGIA 3HNHA 4WWJA 4NY7A 1P3VA 1J2CA 1Z72A 3RM5A 1ULXA 2RGZA 1IX3A 1TWNA 4G8PA 4GPCA 1WZDA 2QCXA 2Q32A 4MECA 2GM8A 2F2GA 3I9UA 1TYHA
chains in the Genus database with same CATH topology
3TGMA 1T5PA 4GPHA 1DVEA 1OZEA 1OZWA 3K4FA 4WWZA 1SK7A 4G8UA 1TWRA 1XJZA 2GM7A 3I9TA 1TO9B 4RAJA 4G8WA 4WMHA 1WOVA 3HMLA 1UBBA 1WNVA 1YAFA 1UDDA 5BTQA 1OTWA 1P3UA 3MVUA 2A6BA 3B5PA 3OQLA 1WNWA 3BJDA 1OZLA 4G99A 1IRMA 4G7PA 4G7UA 2Q4XA 1NI6A 1XK2A 1YAKA 2QPPA 1XK1A 1N45A 2E7EA 1OZRA 4FN6A 1XK0A 3CZYA 1XK3A 1N3UA 2RD3A 4G7LA 3DDEA 2Z68A 3MOOA 1J77A 1S8CA 3IBXA 1P3TA 3NO6A 1DVGA 4LQXA 1IX4A 4G98A 2DY5A 3B5OA 2A2OA 3HLXA 3I8RA 1J02A 1WZFA 1RCWA 1IW1A 1RTWA 4WD4A 1S13A 4GPFA 1WOWA 1OYLA 1IVJA 1V8XA 1IW0A 2QZCA 4G7TA 4GOHA 1WZGA 1WOXA 1WE1A 1WNXA 1TO9A 1WWMA 3HOKA 1OTVA 1OYKA 2A2MA 2ZVUA 4WX0A 1VGIA 3HNHA 4WWJA 4NY7A 1P3VA 1J2CA 1Z72A 3RM5A 1ULXA 2RGZA 1IX3A 1TWNA 4G8PA 4GPCA 1WZDA 2QCXA 2Q32A 4MECA 2GM8A 2F2GA 3I9UA 1TYHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TGM A;  1T5P A;  4GPH A;  1DVE A;  1OZE A;  1OZW A;  3K4F A;  4WWZ A;  1SK7 A;  4G8U A;  1TWR A;  1XJZ A;  2GM7 A;  3I9T A;  1TO9 B;  4RAJ A;  4G8W A;  4WMH A;  1WOV A;  3HML A;  1UBB A;  1WNV A;  1YAF A;  1UDD A;  5BTQ A;  1OTW A;  1P3U A;  3MVU A;  2A6B A;  3B5P A;  3OQL A;  1WNW A;  3BJD A;  1OZL A;  4G99 A;  1IRM A;  4G7P A;  4G7U A;  2Q4X A;  1NI6 A;  1XK2 A;  1YAK A;  2QPP A;  1XK1 A;  1N45 A;  2E7E A;  1OZR A;  4FN6 A;  1XK0 A;  3CZY A;  1XK3 A;  1N3U A;  2RD3 A;  4G7L A;  3DDE A;  2Z68 A;  3MOO A;  1J77 A;  1S8C A;  3IBX A;  1P3T A;  3NO6 A;  1DVG A;  4LQX A;  1IX4 A;  4G98 A;  2DY5 A;  3B5O A;  2A2O A;  3HLX A;  3I8R A;  1J02 A;  1WZF A;  1RCW A;  1IW1 A;  1RTW A;  4WD4 A;  1S13 A;  4GPF A;  1WOW A;  1OYL A;  1IVJ A;  1V8X A;  1IW0 A;  2QZC A;  4G7T A;  4GOH A;  1WZG A;  1WOX A;  1WE1 A;  1WNX A;  1TO9 A;  1WWM A;  3HOK A;  1OTV A;  1OYK A;  2A2M A;  2ZVU A;  4WX0 A;  1VGI A;  3HNH A;  4WWJ A;  4NY7 A;  1P3V A;  1J2C A;  1Z72 A;  3RM5 A;  1ULX A;  2RGZ A;  1IX3 A;  1TWN A;  4G8P A;  4GPC A;  1WZD A;  2QCX A;  2Q32 A;  4MEC A;  2GM8 A;  2F2G A;  3I9U A;  1TYH A; 
#chains in the Genus database with same CATH topology
 3TGM A;  1T5P A;  4GPH A;  1DVE A;  1OZE A;  1OZW A;  3K4F A;  4WWZ A;  1SK7 A;  4G8U A;  1TWR A;  1XJZ A;  2GM7 A;  3I9T A;  1TO9 B;  4RAJ A;  4G8W A;  4WMH A;  1WOV A;  3HML A;  1UBB A;  1WNV A;  1YAF A;  1UDD A;  5BTQ A;  1OTW A;  1P3U A;  2LCU A;  3MVU A;  2A6B A;  3B5P A;  3OQL A;  1WNW A;  3BJD A;  1OZL A;  4G99 A;  1IRM A;  4G7P A;  4G7U A;  2Q4X A;  1NI6 A;  1XK2 A;  1YAK A;  2QPP A;  1XK1 A;  1N45 A;  2E7E A;  1OZR A;  4FN6 A;  1XK0 A;  3CZY A;  1XK3 A;  1N3U A;  2RD3 A;  4G7L A;  3DDE A;  2Z68 A;  3MOO A;  1J77 A;  1S8C A;  3IBX A;  1P3T A;  3NO6 A;  1DVG A;  4LQX A;  1IX4 A;  4G98 A;  2DY5 A;  3B5O A;  2A2O A;  3HLX A;  3I8R A;  1J02 A;  1WZF A;  1RCW A;  1IW1 A;  1RTW A;  4WD4 A;  1S13 A;  4GPF A;  1WOW A;  1OYL A;  1IVJ A;  1V8X A;  1IW0 A;  2QZC A;  4G7T A;  4GOH A;  1WZG A;  1WOX A;  1WE1 A;  1WNX A;  1TO9 A;  1WWM A;  3HOK A;  1OTV A;  1OYK A;  2A2M A;  2ZVU A;  4WX0 A;  1VGI A;  3HNH A;  4WWJ A;  4NY7 A;  1P3V A;  1J2C A;  1Z72 A;  3RM5 A;  1ULX A;  2RGZ A;  1IX3 A;  1TWN A;  4G8P A;  4GPC A;  1WZD A;  2QCX A;  2Q32 A;  4MEC A;  2GM8 A;  2F2G A;  3I9U A;  1TYH A; 
#chains in the Genus database with same CATH homology
 3TGM A;  1T5P A;  4GPH A;  1DVE A;  1OZE A;  1OZW A;  3K4F A;  4WWZ A;  1SK7 A;  4G8U A;  1TWR A;  1XJZ A;  2GM7 A;  3I9T A;  1TO9 B;  4RAJ A;  4G8W A;  4WMH A;  1WOV A;  3HML A;  1UBB A;  1WNV A;  1YAF A;  1UDD A;  5BTQ A;  1OTW A;  1P3U A;  3MVU A;  2A6B A;  3B5P A;  3OQL A;  1WNW A;  3BJD A;  1OZL A;  4G99 A;  1IRM A;  4G7P A;  4G7U A;  2Q4X A;  1NI6 A;  1XK2 A;  1YAK A;  2QPP A;  1XK1 A;  1N45 A;  2E7E A;  1OZR A;  4FN6 A;  1XK0 A;  3CZY A;  1XK3 A;  1N3U A;  2RD3 A;  4G7L A;  3DDE A;  2Z68 A;  3MOO A;  1J77 A;  1S8C A;  3IBX A;  1P3T A;  3NO6 A;  1DVG A;  4LQX A;  1IX4 A;  4G98 A;  2DY5 A;  3B5O A;  2A2O A;  3HLX A;  3I8R A;  1J02 A;  1WZF A;  1RCW A;  1IW1 A;  1RTW A;  4WD4 A;  1S13 A;  4GPF A;  1WOW A;  1OYL A;  1IVJ A;  1V8X A;  1IW0 A;  2QZC A;  4G7T A;  4GOH A;  1WZG A;  1WOX A;  1WE1 A;  1WNX A;  1TO9 A;  1WWM A;  3HOK A;  1OTV A;  1OYK A;  2A2M A;  2ZVU A;  4WX0 A;  1VGI A;  3HNH A;  4WWJ A;  4NY7 A;  1P3V A;  1J2C A;  1Z72 A;  3RM5 A;  1ULX A;  2RGZ A;  1IX3 A;  1TWN A;  4G8P A;  4GPC A;  1WZD A;  2QCX A;  2Q32 A;  4MEC A;  2GM8 A;  2F2G A;  3I9U A;  1TYH A; 
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similar chains in the pdb database (?% sequence similarity)

 
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