1E7DA

Endonuclease vii (endovii) ffrom phage t4
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
157
structure length
157
Chain Sequence
MLLTGKLYKEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELNGPKAGKVRGLLCNLCNAAEGQMKHKFNRSGLKGQGVDYLEWLENLLTYLKSDYTQNNIHPNFVGDKSKEFSRLGKEEMMAEMLQRGFEYNESDTKTQLIASFKKQLRKSLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords RECOMBINATION ENDONUCLEASE VII
publication title Conformational Flexibility in T4 Endonuclease Vii Revealed by Crystallography: Implications for Substrate Binding and Cleavage
pubmed doi rcsb
source organism Bacteriophage t4
total genus 45
structure length 157
sequence length 157
chains with identical sequence B
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2000-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02945 Endonuclease_7 Recombination endonuclease VII
A PF09124 Endonuc-dimeris T4 recombination endonuclease VII, dimerisation
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.10 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 1e7dA02
3.40.1800.10 Alpha Beta 3-Layer(aba) Sandwich His-Me finger endonuclease fold His-Me finger endonucleases 1e7dA01
3FC3A 3GOXA 1E7DA 1E7LA 1A63A 2QNCA 2HJQA 1A62A 2A8VA 1A8VA 2QNFA 1EN7A 3L0OA
chains in the Genus database with same CATH superfamily
1H1JS 2MPHA 1E7LA 2KW9A 1A63A 2QNCA 1YNSA 2A8VA 2QNFA 1V66A 1GKUB 3GOXA 2KVUA 1KHCA 4UZWA 5CIUA 1ZBHA 1JEQA 2DK4A 3FLGA 1H9EA 1H9FA 1Y02A 2KVEA 2RNNA 2LC3A 3QKJA 2N1UA 2LD7A 2JVWA 3LLRA 4BITA 1PZWA 2KVDA 1E7DA 2ODGC 1GJJA 2KFVA 2RNOA 1ZS9A 1GL9B 3L0OA 2ODCI 1JJRA 3FC3A 2WQGA 2HJQA 1A62A 2W51A 1A8VA 1EN7A 2G80A 1JEIA 2KDPA
chains in the Genus database with same CATH topology
2MPHA 1E7LA 1A63A 2QNCA 1YNSA 2A8VA 2QNFA 1GKUB 3GOXA 2DK4A 1H9EA 1H9FA 1Y02A 2LC3A 2LD7A 1E7DA 2ODGC 1GJJA 2KFVA 1ZS9A 1GL9B 3L0OA 2ODCI 3FC3A 2HJQA 1A62A 2W51A 1A8VA 1EN7A 2G80A 1JEIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FC3 A;  3GOX A;  1E7D A;  1E7L A;  1A63 A;  2QNC A;  2HJQ A;  1A62 A;  2A8V A;  1A8V A;  2QNF A;  1EN7 A;  3L0O A; 
#chains in the Genus database with same CATH topology
 1H1J S;  2MPH A;  1E7L A;  2KW9 A;  1A63 A;  2QNC A;  1YNS A;  2A8V A;  2QNF A;  1V66 A;  1GKU B;  3GOX A;  2KVU A;  1KHC A;  4UZW A;  5CIU A;  1ZBH A;  1JEQ A;  2DK4 A;  3FLG A;  1H9E A;  1H9F A;  1Y02 A;  2KVE A;  2RNN A;  2LC3 A;  3QKJ A;  2N1U A;  2LD7 A;  2JVW A;  3LLR A;  4BIT A;  1PZW A;  2KVD A;  1E7D A;  2ODG C;  1GJJ A;  2KFV A;  2RNO A;  1ZS9 A;  1GL9 B;  3L0O A;  2ODC I;  1JJR A;  3FC3 A;  2WQG A;  2HJQ A;  1A62 A;  2W51 A;  1A8V A;  1EN7 A;  2G80 A;  1JEI A;  2KDP A; 
#chains in the Genus database with same CATH homology
 2MPH A;  1E7L A;  1A63 A;  2QNC A;  1YNS A;  2A8V A;  2QNF A;  1GKU B;  3GOX A;  2DK4 A;  1H9E A;  1H9F A;  1Y02 A;  2LC3 A;  2LD7 A;  1E7D A;  2ODG C;  1GJJ A;  2KFV A;  1ZS9 A;  1GL9 B;  3L0O A;  2ODC I;  3FC3 A;  2HJQ A;  1A62 A;  2W51 A;  1A8V A;  1EN7 A;  2G80 A;  1JEI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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