1E7LA

Endonuclease vii (endovii) n62d mutant from phage t4
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
157
structure length
157
Chain Sequence
MLLTGKLYKEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELNGPKAGKVRGLLCNLCDAAEGQMKHKFNRSGLKGQGVDYLEWLENLLTYLKSDYTQNNIHPNFVGDKSKEFSRLGKEEMMAEMLQRGFEYNESDTKTQLIASFKKQLRKSLK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Endonuclease
molecule keywords RECOMBINATION ENDONUCLEASE VII
publication title Conformational Flexibility in T4 Endonuclease Vii Revealed by Crystallography: Implications for Substrate Binding and Cleavage
pubmed doi rcsb
source organism Bacteriophage t4
total genus 50
structure length 157
sequence length 157
chains with identical sequence B
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2000-08-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02945 Endonuclease_7 Recombination endonuclease VII
A PF09124 Endonuc-dimeris T4 recombination endonuclease VII, dimerisation
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.720.10 Mainly Alpha Orthogonal Bundle Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 1e7lA02
3.40.1800.10 Alpha Beta 3-Layer(aba) Sandwich His-Me finger endonuclease fold His-Me finger endonucleases 1e7lA01
1E7DA 1A62A 1A8VA 2QNCA 2QNFA 1EN7A 1E7LA 1A63A 3FC3A 2HJQA 3GOXA 3L0OA 2A8VA
chains in the Genus database with same CATH superfamily
1JEQA 2W51A 1GL9B 1E7LA 2QNFA 1V66A 3QKJA 1H9EA 1JJRA 2HJQA 1H9FA 2ODGC 3FLGA 1YNSA 2LD7A 3FC3A 2QNCA 2G80A 1GJJA 2MPHA 2KVUA 2WQGA 2KDPA 2KFVA 2JVWA 3LLRA 4UZWA 1JEIA 1E7DA 1A62A 1A8VA 1H1JS 1Y02A 1EN7A 1GKUB 1A63A 4BITA 1KHCA 2ODCI 5CIUA 2RNNA 3L0OA 2LC3A 2KVDA 2N1UA 2RNOA 1ZS9A 2KVEA 2KW9A 1ZBHA 1PZWA 2DK4A 3GOXA 2A8VA
chains in the Genus database with same CATH topology
2W51A 1GL9B 1E7LA 2QNFA 1H9EA 2HJQA 1H9FA 2ODGC 1YNSA 2LD7A 3FC3A 2QNCA 2G80A 1GJJA 2MPHA 2KFVA 1JEIA 1E7DA 1A62A 1A8VA 1Y02A 1EN7A 1GKUB 1A63A 2ODCI 3L0OA 2LC3A 1ZS9A 2DK4A 3GOXA 2A8VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1E7D A;  1A62 A;  1A8V A;  2QNC A;  2QNF A;  1EN7 A;  1E7L A;  1A63 A;  3FC3 A;  2HJQ A;  3GOX A;  3L0O A;  2A8V A; 
#chains in the Genus database with same CATH topology
 1JEQ A;  2W51 A;  1GL9 B;  1E7L A;  2QNF A;  1V66 A;  3QKJ A;  1H9E A;  1JJR A;  2HJQ A;  1H9F A;  2ODG C;  3FLG A;  1YNS A;  2LD7 A;  3FC3 A;  2QNC A;  2G80 A;  1GJJ A;  2MPH A;  2KVU A;  2WQG A;  2KDP A;  2KFV A;  2JVW A;  3LLR A;  4UZW A;  1JEI A;  1E7D A;  1A62 A;  1A8V A;  1H1J S;  1Y02 A;  1EN7 A;  1GKU B;  1A63 A;  4BIT A;  1KHC A;  2ODC I;  5CIU A;  2RNN A;  3L0O A;  2LC3 A;  2KVD A;  2N1U A;  2RNO A;  1ZS9 A;  2KVE A;  2KW9 A;  1ZBH A;  1PZW A;  2DK4 A;  3GOX A;  2A8V A; 
#chains in the Genus database with same CATH homology
 2W51 A;  1GL9 B;  1E7L A;  2QNF A;  1H9E A;  2HJQ A;  1H9F A;  2ODG C;  1YNS A;  2LD7 A;  3FC3 A;  2QNC A;  2G80 A;  1GJJ A;  2MPH A;  2KFV A;  1JEI A;  1E7D A;  1A62 A;  1A8V A;  1Y02 A;  1EN7 A;  1GKU B;  1A63 A;  2ODC I;  3L0O A;  2LC3 A;  1ZS9 A;  2DK4 A;  3GOX A;  2A8V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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