1E7NA

The n-terminal domain of beta-b2-crystallin resembles the putative ancestral homodimer
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
89
structure length
89
Chain Sequence
LNPKIIIFEQENFQGHSHELSGPCPNLKETGMEKAGSVLVQAGPWVGYEQANCKGEQFVFEKGEYPRWDSWTSSRRTDSLSSLRPIKVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords BETA-CRYSTALLIN B2
publication title The N-Terminal Domain of Betab2-Crystallin Resembles the Putative Ancestral Homodimer.
pubmed doi rcsb
source organism Mus musculus
total genus 16
structure length 89
sequence length 89
chains with identical sequence B
ec nomenclature
pdb deposition date 2000-08-31

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 1e7nA00
1HDFA 1ZIEA 4EL6A 1PRSA 3HZ2A 1ZIRA 1HK0X 1OKIA 4PSRA 4W9BA 2BB2A 1BD7A 2B1OA 3ENUA 1AG4A 4PSPA 5HT8A 3HZBA 1YHPA 2DADA 3IAJA 3SO1A 1M8UA 3SO0A 2M3UA 3QK3A 2NBRA 1ZWMA 1GCSA 1E7NA 1AMMA 4GR7A 1H4AX 5HT9A 4AKAA 4JGFA 1GAMA 4GCRA 3ENTA 1A45A 2BV2A 1DSLA 1I5IA 1HA4A 1YTQA 2A5MA 1BLBA 2JDFA 1ELPA 1A7HA 2KP5A 2M3TA 2K1XA 1ZWOA 3I9HA 1ZGTA 2M3CA 3LWKA 4W9AA 4FD9A 1NPSA 2G98A 2JDGA 2K1WA 2KFBA 4IAUA 3CW3A 4NI3A 3SNZA 1PRRA 1ZIQA 1A5DA 2V2UA 3SNYA
chains in the Genus database with same CATH superfamily
4EL6A 1F53A 3HZ2A 2BB2A 1BD7A 4PSPA 5HT8A 2DADA 3IAJA 3QK3A 1GCSA 1E7NA 1I5IA 1A7HA 2M3TA 2K1XA 2V2UA 3SNYA 1HDFA 1ZIEA 1PRSA 2B1OA 3ENUA 1AG4A 3SO1A 2NBRA 5HT9A 4AKAA 3ENTA 1DSLA 1YTQA 2KP5A 4W9AA 1ZGTA 3LWKA 1BHUA 4NI3A 3CW3A 1PRRA 1GH5A 4PSRA 4W9BA 3HZBA 1YHPA 2M3UA 1G6EA 1ZWMA 4GR7A 1H4AX 1WKTA 1GAMA 2BV2A 2JDFA 4GCRA 1BLBA 3I9HA 1ZWOA 2G98A 2K1WA 4IAUA 2KFBA 1A5DA 1ZIRA 1HK0X 1OKIA 3UJZA 1M8UA 1C01A 1AMMA 4JGFA 1A45A 1HA4A 3SO0A 2A5MA 1ELPA 2M3CA 4FD9A 1NPSA 2JDGA 3SNZA 1ZIQA
chains in the Genus database with same CATH topology
1HDFA 1ZIEA 4EL6A 1PRSA 3HZ2A 1ZIRA 1HK0X 1OKIA 4PSRA 4W9BA 2BB2A 1BD7A 2B1OA 3ENUA 1AG4A 4PSPA 5HT8A 3HZBA 1YHPA 2DADA 3IAJA 3SO1A 1M8UA 3SO0A 2M3UA 3QK3A 2NBRA 1ZWMA 1GCSA 1E7NA 1AMMA 4GR7A 1H4AX 5HT9A 4AKAA 4JGFA 1GAMA 4GCRA 3ENTA 1A45A 2BV2A 1DSLA 1I5IA 1HA4A 1YTQA 2A5MA 1BLBA 2JDFA 1ELPA 1A7HA 2KP5A 2M3TA 2K1XA 1ZWOA 3I9HA 1ZGTA 2M3CA 3LWKA 4W9AA 4FD9A 1NPSA 2G98A 2JDGA 2K1WA 2KFBA 4IAUA 3CW3A 4NI3A 3SNZA 1PRRA 1ZIQA 1A5DA 2V2UA 3SNYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HDF A;  1ZIE A;  4EL6 A;  1PRS A;  3HZ2 A;  1ZIR A;  1HK0 X;  1OKI A;  4PSR A;  4W9B A;  2BB2 A;  1BD7 A;  2B1O A;  3ENU A;  1AG4 A;  4PSP A;  5HT8 A;  3HZB A;  1YHP A;  2DAD A;  3IAJ A;  3SO1 A;  1M8U A;  3SO0 A;  2M3U A;  3QK3 A;  2NBR A;  1ZWM A;  1GCS A;  1E7N A;  1AMM A;  4GR7 A;  1H4A X;  5HT9 A;  4AKA A;  4JGF A;  1GAM A;  4GCR A;  3ENT A;  1A45 A;  2BV2 A;  1DSL A;  1I5I A;  1HA4 A;  1YTQ A;  2A5M A;  1BLB A;  2JDF A;  1ELP A;  1A7H A;  2KP5 A;  2M3T A;  2K1X A;  1ZWO A;  3I9H A;  1ZGT A;  2M3C A;  3LWK A;  4W9A A;  4FD9 A;  1NPS A;  2G98 A;  2JDG A;  2K1W A;  2KFB A;  4IAU A;  3CW3 A;  4NI3 A;  3SNZ A;  1PRR A;  1ZIQ A;  1A5D A;  2V2U A;  3SNY A; 
#chains in the Genus database with same CATH topology
 4EL6 A;  1F53 A;  3HZ2 A;  2BB2 A;  1BD7 A;  4PSP A;  5HT8 A;  2DAD A;  3IAJ A;  3QK3 A;  1GCS A;  1E7N A;  1I5I A;  1A7H A;  2M3T A;  2K1X A;  2V2U A;  3SNY A;  1HDF A;  1ZIE A;  1PRS A;  2B1O A;  3ENU A;  1AG4 A;  3SO1 A;  2NBR A;  5HT9 A;  4AKA A;  3ENT A;  1DSL A;  1YTQ A;  2KP5 A;  4W9A A;  1ZGT A;  3LWK A;  1BHU A;  4NI3 A;  3CW3 A;  1PRR A;  1GH5 A;  4PSR A;  4W9B A;  3HZB A;  1YHP A;  2M3U A;  1G6E A;  1ZWM A;  4GR7 A;  1H4A X;  1WKT A;  1GAM A;  2BV2 A;  2JDF A;  4GCR A;  1BLB A;  3I9H A;  1ZWO A;  2G98 A;  2K1W A;  4IAU A;  2KFB A;  1A5D A;  1ZIR A;  1HK0 X;  1OKI A;  3UJZ A;  1M8U A;  1C01 A;  1AMM A;  4JGF A;  1A45 A;  1HA4 A;  3SO0 A;  2A5M A;  1ELP A;  2M3C A;  4FD9 A;  1NPS A;  2JDG A;  3SNZ A;  1ZIQ A; 
#chains in the Genus database with same CATH homology
 1HDF A;  1ZIE A;  4EL6 A;  1PRS A;  3HZ2 A;  1ZIR A;  1HK0 X;  1OKI A;  4PSR A;  4W9B A;  2BB2 A;  1BD7 A;  2B1O A;  3ENU A;  1AG4 A;  4PSP A;  5HT8 A;  3HZB A;  1YHP A;  2DAD A;  3IAJ A;  3SO1 A;  1M8U A;  3SO0 A;  2M3U A;  3QK3 A;  2NBR A;  1ZWM A;  1GCS A;  1E7N A;  1AMM A;  4GR7 A;  1H4A X;  5HT9 A;  4AKA A;  4JGF A;  1GAM A;  4GCR A;  3ENT A;  1A45 A;  2BV2 A;  1DSL A;  1I5I A;  1HA4 A;  1YTQ A;  2A5M A;  1BLB A;  2JDF A;  1ELP A;  1A7H A;  2KP5 A;  2M3T A;  2K1X A;  1ZWO A;  3I9H A;  1ZGT A;  2M3C A;  3LWK A;  4W9A A;  4FD9 A;  1NPS A;  2G98 A;  2JDG A;  2K1W A;  2KFB A;  4IAU A;  3CW3 A;  4NI3 A;  3SNZ A;  1PRR A;  1ZIQ A;  1A5D A;  2V2U A;  3SNY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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