1E88A

Solution structure of 6f11f22f2, a compact three-module fragment of the gelatin-binding domain of human fibronectin
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
160
structure length
160
Chain Sequence
YGHCVTDSGVVYSVGMQWLKTQGNKQMLCTCLGNGVSCQETAVTQTYGGNSNGEPCVLPFTYNGRTFYSCTTEGRQDGHLWCSTTSNYEQDQKYSFCTDHTVLVQTRGGNSNGALCHFPFLYNNHNYTDCTSEGRRDNMKWCGTTQNYDADQKFGFCPMA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell adhesion
molecule keywords FIBRONECTIN
publication title The Hairpin Structure of the (6)F1(1)F2(2)F2 Fragment from Human Fibronectin Enhances Gelatin Binding
pubmed doi rcsb
source organism Homo sapiens
total genus 15
structure length 160
sequence length 160
ec nomenclature
pdb deposition date 2000-09-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00039 fn1 Fibronectin type I domain
A PF00040 fn2 Fibronectin type II domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 1e88A01
2.10.10.10 Mainly Beta Ribbon Seminal Fluid Protein PDC-109 (Domain B) Fibronectin, type II, collagen-binding 1e88A02
2.10.70.10 Mainly Beta Ribbon Complement Module; domain 1 Complement Module, domain 1 1e88A03
3ERBA 4JHSA 5HYPA 4LOTA 1EAKA 3M7PA 1GPZA 1SS2A 3MQLA 2CKUA 2KMSA 1CXWA 1KS0A 1OK9A 1TPMA 3T5OA 3NFPI 2V5OA 1G4GA 2LOJA 2G7IA 1GXDA 3GOVA 1PDCA 3ZD2A 2XRBA 4LOSA 2RLPA 1ZJKA 4AYIA 5FO8C 2JGXA 1OK3A 2JRAA 1LY2A 4YNXA 4KKDA 1UOTP 3TVJA 1O9AA 3RJ3D 1Z92B 2CG7A 3OEDC 5HYTB 1OJYA 2XWJI 3R62A 3O8EB 1PPQA 2JGWA 2IZ4A 1HFHA 1CKLA 4MUCA 2RLQA 1J7MA 2RKYA 1L6JA 4FXGG 1C1ZA 5HZPB 4ONTD 4C16A 2V8EA 3OP8A 3ZD1A 4AYEA 1NWVA 1OK1A 2W80A 4ZH1D 2KRIA 1QGBA 3OXUD 2RL0A 4DJZA 2MCYA 4IGDA 1G4FA 1SRZA 1VVCA 4PZ5A 4WJG2 3ZRZA 1CK7A 1TPNA 4F4OC 1QO6A 4B2RA 2O39C 4AYDA 1GKGA 3SW0X 4K12A 1Q3XA 1OJVA 1H8PA 3IU3I 1FBRA 2IZ3A 3CALA 4A5WB 1OJWA 3INBC 2QY0A 2W81A 1E5GA 1E8BA 3GXEA 5I0QB 2RKZA 2WIIC 1GHQB 1MD7A 1H2QP 1E88A 2EHFA 1MD8A 3IX0A 3L89M 2XWBF 1H2PP 3KZJA 1H04P 5HYUB 1HFIA 1OK2A 1QUBA 2MCZA 2A55A 2ERJA 5JPMG 1ELVA 1HCCA 2XRDA 2EC3A 2XQWC 2UWNA 2YBYA 2B5ID 2FN2A 1H03P 1GKNA 1TPGA 3KXVA 2BZMA 4J38B 4B2SA 4CSYA 3EJHA 1U5MA 1VVDA 2YRAA 2CG6A 4AYMA
chains in the Genus database with same CATH superfamily
3ERBA 4JHSA 5HYPA 2Y2QA 4LOTA 1EAKA 3M7PA 1GPZA 1SS2A 3MQLA 3L26A 2CKUA 4GHLA 1CXWA 1KS0A 4IBDA 1OK9A 2KMSA 2BG1A 4OJ5A 1AIWA 4IBCA 4MB4A 1TPMA 2RTSA 3WSYA 3T5OA 4IJFA 3NFPI 4Z2IA 2V5OA 4NZ3A 1G4GA 2LOJA 2Y2KA 4NYYA 2JE5A 2G7IA 4IBBA 1GXDA 3GOVA 1PDCA 4YIZA 3ZD2A 1W1VA 3KS8A 3WD3A 1ED7A 3KS4A 2XRBA 4LOSA 4IBJA 5DN4A 4OJPA 2RLPA 1ZJKA 4MB5A 4AYIA 5FO8C 2JGXA 3K3TA 1OK3A 1RLHA 2Y2OA 1YU1A 2Y8SA 2JRAA 2Y2LA 3F6KA 4BWCA 3VWOA 1LY2A 4NY2A 4YNXA 2Y2PA 4KKDA 1UOTP 3TVJA 3WD0A 1O9AA 2Y2JA 4TX8A 4OJLA 3WD1A 3RJ3D 1Z92B 4GH9A 4OJOA 3ZLEA 2ZYCA 2CG7A 2UWXA 3OEDC 4Z2JA 5HYTB 4Z2KA 1OJYA 1H0GA 2Y2NA 2XWJI 2I2LA 1YU3A 1YUEA 2X2ZA 1YU2A 3R62A 3O8EB 3HONA 4IBEA 3ZLDA 4NYUA 1PPQA 3WX7A 4APLA 1E6ZA 4OUIA 4NZ5A 3WSXA 2JGWA 3ZRZA 2IZ4A 1HFHA 1CKLA 4MUCA 2RLQA 1J7MA 4IBIA 1L6JA 2RKYA 3NJAA 4FXGG 3EJHA 1UR9A 3L29A 1YU4A 1C1ZA 4ONTD 2Y2MA 3L2AA 1E6NA 3L28A 4C16A 5HZPB 4IJEA 2V8EA 3L25A 3OP8A 3ZD1A 4AYEA 1NWVA 1OK1A 2D49A 2W80A 4ZH1D 2KRIA 1W1YA 1GPFA 1UR8A 2Y2HA 1QGBA 3OXUD 1H0IA 2RL0A 1E6PA 4QNLA 2Y8TA 2Y8RA 2JCHA 3FKEA 1E6RA 2MCYA 4DJZA 4IGDA 1G4FA 4OJ6A 1SRZA 1VVCA 4MSLA 4PZ5A 1E15A 4IBFA 1CK7A 5BPVA 2Y2IA 4WJG2 3WD2A 1TPNA 4F4OC 1QO6A 4B2RA 2O39C 4AYDA 1GKGA 3SW0X 2IOUA 4K12A 1GOIA 1W1PA 1OJVA 1Q3XA 1H8PA 3CI0J 3IU3I 2XD1A 1FBRA 2IZ3A 3CALA 4A5WB 1OJWA 3INBC 2QY0A 2Y2GA 4MB3A 5DN5A 2W81A 4LG2A 4Z2LA 1E5GA 1E8BA 1O6IA 3N3FA 2RKZA 2WIIC 3GXEA 5I0QB 3WD4A 1GHQB 1OGGA 1MD7A 1H2QP 1E88A 2EHFA 1MD8A 3IX0A 3L89M 2XWBF 1H2PP 4PO7A 1YU0A 3FGTA 2FFFB 4IBGA 3KZJA 2XD5A 3L27A 1H04P 5HYUB 1HFIA 1OK2A 1U5MA 4NZ1A 4GHAA 4NZ4A 1QUBA 2MCZA 4HMDA 2A55A 4Z2GA 2ERJA 4N7EA 4IBKA 5JPMG 3HSHA 1ELVA 1HCCA 2XRDA 2EC3A 4Z2HA 2XQWC 2UWNA 2YBYA 2B5ID 2FN2A 4HMCA 1H03P 1GKNA 1OGBA 1TPGA 3KXVA 2BZMA 4J38B 3FGRA 4B2SA 4CSYA 4HMEA 1W1TA 1VVDA 2YRAA 2CG6A 4AYMA
chains in the Genus database with same CATH topology
3ERBA 4JHSA 5HYPA 4LOTA 1EAKA 3M7PA 1GPZA 1SS2A 3MQLA 2CKUA 2KMSA 1CXWA 1KS0A 1OK9A 1TPMA 3T5OA 3NFPI 2V5OA 1G4GA 2LOJA 2G7IA 1GXDA 3GOVA 1PDCA 3ZD2A 2XRBA 4LOSA 2RLPA 1ZJKA 4AYIA 5FO8C 2JGXA 1OK3A 2JRAA 1LY2A 4YNXA 4KKDA 1UOTP 3TVJA 1O9AA 3RJ3D 1Z92B 2CG7A 3OEDC 5HYTB 1OJYA 2XWJI 3R62A 3O8EB 1PPQA 2JGWA 2IZ4A 1HFHA 1CKLA 4MUCA 2RLQA 1J7MA 2RKYA 1L6JA 4FXGG 1C1ZA 5HZPB 4ONTD 4C16A 2V8EA 3OP8A 3ZD1A 4AYEA 1NWVA 1OK1A 2W80A 4ZH1D 2KRIA 1QGBA 3OXUD 2RL0A 4DJZA 2MCYA 4IGDA 1G4FA 1SRZA 1VVCA 4PZ5A 4WJG2 3ZRZA 1CK7A 1TPNA 4F4OC 1QO6A 4B2RA 2O39C 4AYDA 1GKGA 3SW0X 4K12A 1Q3XA 1OJVA 1H8PA 3IU3I 1FBRA 2IZ3A 3CALA 4A5WB 1OJWA 3INBC 2QY0A 2W81A 1E5GA 1E8BA 3GXEA 5I0QB 2RKZA 2WIIC 1GHQB 1MD7A 1H2QP 1E88A 2EHFA 1MD8A 3IX0A 3L89M 2XWBF 1H2PP 3KZJA 1H04P 5HYUB 1HFIA 1OK2A 1QUBA 2MCZA 2A55A 2ERJA 5JPMG 1ELVA 1HCCA 2XRDA 2EC3A 2XQWC 2UWNA 2YBYA 2B5ID 2FN2A 1H03P 1GKNA 1TPGA 3KXVA 2BZMA 4J38B 4B2SA 4CSYA 3EJHA 1U5MA 1VVDA 2YRAA 2CG6A 4AYMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ERB A;  4JHS A;  5HYP A;  4LOT A;  1EAK A;  3M7P A;  1GPZ A;  1SS2 A;  3MQL A;  2CKU A;  2KMS A;  1CXW A;  1KS0 A;  1OK9 A;  1TPM A;  3T5O A;  3NFP I;  2V5O A;  1G4G A;  2LOJ A;  2G7I A;  1GXD A;  3GOV A;  1PDC A;  3ZD2 A;  2XRB A;  4LOS A;  2RLP A;  1ZJK A;  4AYI A;  5FO8 C;  2JGX A;  1OK3 A;  2JRA A;  1LY2 A;  4YNX A;  4KKD A;  1UOT P;  3TVJ A;  1O9A A;  3RJ3 D;  1Z92 B;  2CG7 A;  3OED C;  5HYT B;  1OJY A;  2XWJ I;  3R62 A;  3O8E B;  1PPQ A;  2JGW A;  2IZ4 A;  1HFH A;  1CKL A;  4MUC A;  2RLQ A;  1J7M A;  2RKY A;  1L6J A;  4FXG G;  1C1Z A;  5HZP B;  4ONT D;  4C16 A;  2V8E A;  3OP8 A;  3ZD1 A;  4AYE A;  1NWV A;  1OK1 A;  2W80 A;  4ZH1 D;  2KRI A;  1QGB A;  3OXU D;  2RL0 A;  4DJZ A;  2MCY A;  4IGD A;  1G4F A;  1SRZ A;  1VVC A;  4PZ5 A;  4WJG 2;  3ZRZ A;  1CK7 A;  1TPN A;  4F4O C;  1QO6 A;  4B2R A;  2O39 C;  4AYD A;  1GKG A;  3SW0 X;  4K12 A;  1Q3X A;  1OJV A;  1H8P A;  3IU3 I;  1FBR A;  2IZ3 A;  3CAL A;  4A5W B;  1OJW A;  3INB C;  2QY0 A;  2W81 A;  1E5G A;  1E8B A;  3GXE A;  5I0Q B;  2RKZ A;  2WII C;  1GHQ B;  1MD7 A;  1H2Q P;  1E88 A;  2EHF A;  1MD8 A;  3IX0 A;  3L89 M;  2XWB F;  1H2P P;  3KZJ A;  1H04 P;  5HYU B;  1HFI A;  1OK2 A;  1QUB A;  2MCZ A;  2A55 A;  2ERJ A;  5JPM G;  1ELV A;  1HCC A;  2XRD A;  2EC3 A;  2XQW C;  2UWN A;  2YBY A;  2B5I D;  2FN2 A;  1H03 P;  1GKN A;  1TPG A;  3KXV A;  2BZM A;  4J38 B;  4B2S A;  4CSY A;  3EJH A;  1U5M A;  1VVD A;  2YRA A;  2CG6 A;  4AYM A; 
#chains in the Genus database with same CATH topology
 3ERB A;  4JHS A;  5HYP A;  2Y2Q A;  4LOT A;  1EAK A;  3M7P A;  1GPZ A;  1SS2 A;  3MQL A;  3L26 A;  2CKU A;  4GHL A;  1CXW A;  1KS0 A;  4IBD A;  1OK9 A;  2KMS A;  2BG1 A;  4OJ5 A;  1AIW A;  4IBC A;  4MB4 A;  1TPM A;  2RTS A;  3WSY A;  3T5O A;  4IJF A;  3NFP I;  4Z2I A;  2V5O A;  4NZ3 A;  1G4G A;  2LOJ A;  2Y2K A;  4NYY A;  2JE5 A;  2G7I A;  4IBB A;  1GXD A;  3GOV A;  1PDC A;  4YIZ A;  3ZD2 A;  1W1V A;  3KS8 A;  3WD3 A;  1ED7 A;  3KS4 A;  2XRB A;  4LOS A;  4IBJ A;  5DN4 A;  4OJP A;  2RLP A;  1ZJK A;  4MB5 A;  4AYI A;  5FO8 C;  2JGX A;  3K3T A;  1OK3 A;  1RLH A;  2Y2O A;  1YU1 A;  2Y8S A;  2JRA A;  2Y2L A;  3F6K A;  4BWC A;  3VWO A;  1LY2 A;  4NY2 A;  4YNX A;  2Y2P A;  4KKD A;  1UOT P;  3TVJ A;  3WD0 A;  1O9A A;  2Y2J A;  4TX8 A;  4OJL A;  3WD1 A;  3RJ3 D;  1Z92 B;  4GH9 A;  4OJO A;  3ZLE A;  2ZYC A;  2CG7 A;  2UWX A;  3OED C;  4Z2J A;  5HYT B;  4Z2K A;  1OJY A;  1H0G A;  2Y2N A;  2XWJ I;  2I2L A;  1YU3 A;  1YUE A;  2X2Z A;  1YU2 A;  3R62 A;  3O8E B;  3HON A;  4IBE A;  3ZLD A;  4NYU A;  1PPQ A;  3WX7 A;  4APL A;  1E6Z A;  4OUI A;  4NZ5 A;  3WSX A;  2JGW A;  3ZRZ A;  2IZ4 A;  1HFH A;  1CKL A;  4MUC A;  2RLQ A;  1J7M A;  4IBI A;  1L6J A;  2RKY A;  3NJA A;  4FXG G;  3EJH A;  1UR9 A;  3L29 A;  1YU4 A;  1C1Z A;  4ONT D;  2Y2M A;  3L2A A;  1E6N A;  3L28 A;  4C16 A;  5HZP B;  4IJE A;  2V8E A;  3L25 A;  3OP8 A;  3ZD1 A;  4AYE A;  1NWV A;  1OK1 A;  2D49 A;  2W80 A;  4ZH1 D;  2KRI A;  1W1Y A;  1GPF A;  1UR8 A;  2Y2H A;  1QGB A;  3OXU D;  1H0I A;  2RL0 A;  1E6P A;  4QNL A;  2Y8T A;  2Y8R A;  2JCH A;  3FKE A;  1E6R A;  2MCY A;  4DJZ A;  4IGD A;  1G4F A;  4OJ6 A;  1SRZ A;  1VVC A;  4MSL A;  4PZ5 A;  1E15 A;  4IBF A;  1CK7 A;  5BPV A;  2Y2I A;  4WJG 2;  3WD2 A;  1TPN A;  4F4O C;  1QO6 A;  4B2R A;  2O39 C;  4AYD A;  1GKG A;  3SW0 X;  2IOU A;  4K12 A;  1GOI A;  1W1P A;  1OJV A;  1Q3X A;  1H8P A;  3CI0 J;  3IU3 I;  2XD1 A;  1FBR A;  2IZ3 A;  3CAL A;  4A5W B;  1OJW A;  3INB C;  2QY0 A;  2Y2G A;  4MB3 A;  5DN5 A;  2W81 A;  4LG2 A;  4Z2L A;  1E5G A;  1E8B A;  1O6I A;  3N3F A;  2RKZ A;  2WII C;  3GXE A;  5I0Q B;  3WD4 A;  1GHQ B;  1OGG A;  1MD7 A;  1H2Q P;  1E88 A;  2EHF A;  1MD8 A;  3IX0 A;  3L89 M;  2XWB F;  1H2P P;  4PO7 A;  1YU0 A;  3FGT A;  2FFF B;  4IBG A;  3KZJ A;  2XD5 A;  3L27 A;  1H04 P;  5HYU B;  1HFI A;  1OK2 A;  1U5M A;  4NZ1 A;  4GHA A;  4NZ4 A;  1QUB A;  2MCZ A;  4HMD A;  2A55 A;  4Z2G A;  2ERJ A;  4N7E A;  4IBK A;  5JPM G;  3HSH A;  1ELV A;  1HCC A;  2XRD A;  2EC3 A;  4Z2H A;  2XQW C;  2UWN A;  2YBY A;  2B5I D;  2FN2 A;  4HMC A;  1H03 P;  1GKN A;  1OGB A;  1TPG A;  3KXV A;  2BZM A;  4J38 B;  3FGR A;  4B2S A;  4CSY A;  4HME A;  1W1T A;  1VVD A;  2YRA A;  2CG6 A;  4AYM A; 
#chains in the Genus database with same CATH homology
 3ERB A;  4JHS A;  5HYP A;  4LOT A;  1EAK A;  3M7P A;  1GPZ A;  1SS2 A;  3MQL A;  2CKU A;  2KMS A;  1CXW A;  1KS0 A;  1OK9 A;  1TPM A;  3T5O A;  3NFP I;  2V5O A;  1G4G A;  2LOJ A;  2G7I A;  1GXD A;  3GOV A;  1PDC A;  3ZD2 A;  2XRB A;  4LOS A;  2RLP A;  1ZJK A;  4AYI A;  5FO8 C;  2JGX A;  1OK3 A;  2JRA A;  1LY2 A;  4YNX A;  4KKD A;  1UOT P;  3TVJ A;  1O9A A;  3RJ3 D;  1Z92 B;  2CG7 A;  3OED C;  5HYT B;  1OJY A;  2XWJ I;  3R62 A;  3O8E B;  1PPQ A;  2JGW A;  2IZ4 A;  1HFH A;  1CKL A;  4MUC A;  2RLQ A;  1J7M A;  2RKY A;  1L6J A;  4FXG G;  1C1Z A;  5HZP B;  4ONT D;  4C16 A;  2V8E A;  3OP8 A;  3ZD1 A;  4AYE A;  1NWV A;  1OK1 A;  2W80 A;  4ZH1 D;  2KRI A;  1QGB A;  3OXU D;  2RL0 A;  4DJZ A;  2MCY A;  4IGD A;  1G4F A;  1SRZ A;  1VVC A;  4PZ5 A;  4WJG 2;  3ZRZ A;  1CK7 A;  1TPN A;  4F4O C;  1QO6 A;  4B2R A;  2O39 C;  4AYD A;  1GKG A;  3SW0 X;  4K12 A;  1Q3X A;  1OJV A;  1H8P A;  3IU3 I;  1FBR A;  2IZ3 A;  3CAL A;  4A5W B;  1OJW A;  3INB C;  2QY0 A;  2W81 A;  1E5G A;  1E8B A;  3GXE A;  5I0Q B;  2RKZ A;  2WII C;  1GHQ B;  1MD7 A;  1H2Q P;  1E88 A;  2EHF A;  1MD8 A;  3IX0 A;  3L89 M;  2XWB F;  1H2P P;  3KZJ A;  1H04 P;  5HYU B;  1HFI A;  1OK2 A;  1QUB A;  2MCZ A;  2A55 A;  2ERJ A;  5JPM G;  1ELV A;  1HCC A;  2XRD A;  2EC3 A;  2XQW C;  2UWN A;  2YBY A;  2B5I D;  2FN2 A;  1H03 P;  1GKN A;  1TPG A;  3KXV A;  2BZM A;  4J38 B;  4B2S A;  4CSY A;  3EJH A;  1U5M A;  1VVD A;  2YRA A;  2CG6 A;  4AYM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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