1E8JA

Solution structure of desulfovibrio gigas zinc rubredoxin, nmr, 20 structures
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
52
structure length
52
Chain Sequence
MDIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGASKDAFEKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
source organism Desulfovibrio gigas
publication title NMR Structure of Desulfovibrio Gigas Rubredoxin: A Model for Studying Protein Stabilization by Compatible Solutes.
pubmed rcsb
molecule keywords RUBREDOXIN
total genus 2
structure length 52
sequence length 52
ec nomenclature
pdb deposition date 2000-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00301 Rubredoxin Rubredoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.28.10 Mainly Beta Single Sheet Rubrerythrin, domain 2 Rubrerythrin, domain 2 1e8jA00
2KKDA 2RDVA 1SMMA 4AR4A 3QVDA 3RZ6A 4POFA 1BRFA 1T9QA 1CADA 1BE7A 1R0JA 1C09A 1BQ9A 2PVEA 1YV1A 1IU5A 2LCQA 2DSXA 3KYYA 1YK4A 2MS3A 3KYXA 4ME3A 4TPUA 1RDVA 1JYBA 1RWDA 1IROA 1R0GA 2GMGA 3A44A 4POGA 2M4YA 5AI2A 1B2JA 6RXNA 1ZRPA 3PWFA 1R0FA 1BQ8A 1DVBA 3RZTA 1T9OA 2VL6A 1R0HA 4YWLA 2HR5A 1S2ZA 5IY0A 5AI3A 4K9FA 1T9PA 1S24A 1B71A 2V3BB 1LTLA 1QCVA 3KYWA 1VCXA 4YWMA 4AR5A 1LKOA 1S30A 1YUZA 1BFYA 2QL0A 4AR3A 4RXNA 2K2DA 1IRNA 1LKMA 1FHMA 1SMUA 1IU6A 1SMWA 1YK5A 2KN9A 1R0IA 1B2OA 3SS2A 3PZAA 3MPSA 1DX8A 1RDGA 4AR6A 8RXNA 1YUXA 3KYUA 1RB9A 1E8JA 1LKPA 3RYGA 1FHHA 7RXNA 1H7VA 2PYAA 1QYBA 1NNQA 1RYTA 5RXNA 3KYVA 2PVXA 1B13A 1CAAA
chains in the Genus database with same CATH superfamily
3LNLA 2KKDA 4AHWA 4LHLA 4C2M1 3QVDA 4JAFA 3PO2L 4A3LL 1T9QA 4ZN3B 1BE7A 4AI1A 2NVYL 1VZHA 2JA8L 4JADA 5EIOC 1R0GA 4Y52L 2JA6L 3A44A 1WCML 2CKAA 4WFN1 3PL5A 3HOVL 1VZGA 1B2JA 4C3IL 2WAQP 5GAGc 5DM61 2VL6A 1R0HA 4YWLA 2HR5A 2NVTL 2C6AA 1TWHL 1S24A 2V3BB 1LTLA 4LHNA 5MGNA 1BFYA 2HVYC 5M3ML 4A3BL 5C3EL 4JAGA 3GTJL 1PFUA 3WWLA 2WB1P 2R92L 2KN9A 3I4NL 1B2OA 3PKJA 4AHZA 2E2HL 5JVH1 1I50L 3S14L 1RB9A 5IYCL 1E8JA 3RYGA 1FHHA 3S2HL 1B13A 1NXEA 3HJWB 2RFKB 3S1NL 4AR4A 2ERJA 3RZ6A 3H9CA 3H3VM 2VUML 1I6HL 1C09A 3HJYB 3K35A 1PFVA 1YV1A 2DSXA 1YK4A 3KYXA 1OWCA 2A68D 1RDVA 1JYBA 4TVMA 3LWRB 1IROA 3LWQB 3CQZL 6RXNA 1ZRPA 2B63L 3PWFA 1TWFL 4AHYA 2XJTA 3WWNB 4AI2A 3RZTA 2JA5L 4QIWP 5JVG1 2BE5D 4U671 5GAHc 3LWOB 4A3FL 4BY7L 5M3FL 4K9FA 1B71A 2C6BA 3I4ML 3S1QL 3S2DL 4E6YA 1VCXA 2A6HD 4A3GL 3M4OL 3B08B 1LKOA 1IW7D 4ZN1B 5MFZA 3HOZL 3IU3I 1SFOL 2AYJA 2A69D 4AI3A 5FJ8L 2K2DA 5MFPA 2AQCA 1SMUA 4BY1L 4A3JL 4V196 2NVQL 3GTML 3S15L 1R0IA 1QQTA 5C44L 2CKCA 1RDGA 4AR6A 1YUXA 2XJVA 5DM71 3VPBE 3LPEB 2V0FA 7RXNA 3MQKB 3S16L 1RYTA 3S1ML 2AUSB 3KYVA 3J7Z1 1CAAA 5GAEc 2RDVA 1SMMA 2XJSA 3GTLL 3PO3L 2B5ID 3FDJA 1BRFA 1Y1WL 1R0JA 4A3EL 1Y1VL 2XJQA 1BQ9A 2PVEA 2JA7L 3PIP1 2LCQA 1F4LA 3KYYA 5MF6A 4A3KL 3HOWL 1RWDA 4C3HL 2GMGA 2JI1A 3LWPB 4A3IL 5EINC 5AI2A 2H12A 4BBSL 5H1Sc 2E2JL 5IYDL 3GTQL 1WJVA 4BXXL 2Z3RB 3PKIA 2ERSA 5IY0A 1RYQA 5AI3A 1T9PA 5K2ME 3HOUL 3HOYL 1K83L 1QCVA 1P7PA 3KYWA 5C4XL 4XXBB 1S30A 4JAEA 2NVXL 2M6PA 4X6AL 4A3DL 5MLC3 2QL0A 1OWBA 4AR3A 3FKIL 1IRNA 3GTKL 5M5WL 1FHMA 4AHXA 2E2IL 1VZIA 2PMZP 2M6OA 2PSMC 2R93L 3K7AL 4BBRL 3KYUA 4A93L 5AN9H 2XJRA 4A3CL 2ZIXA 3H0GL 1H7VA 1QYBA 5RXNA 3QQCE 2PVXA 2JI3A 5C4JL 3S1RL 3NFPI 1PFWA 4POFA 4GS7D 1Z92B 4B8CD 1I3QL 1CADA 1TWGL 3JR7A 3H99A 3S17L 3HOXL 1IU5A 2J9UB 4AI0A 2MS3A 4ME3A 4TPUA 3H97A 3P8BA 1ODHA 1PZXA 2V0EA 4XGHA 4POGA 5GADc 4C3JL 2CR8A 1TWCL 2M4YA 3M3YL 3LWVB 2M4VA 1R0FA 1BQ8A 1DVBA 1T9OA 5M5XL 5IP7L 3GTGL 5M5YL 1S2ZA 1R9TL 4Y7NL 2JI2A 2Y0SP 2APOB 3HAXC 4YWMA 4AR5A 2EY4E 3PIO1 2NYDA 1YUZA 5IP9L 3B0AB 4RXNA 1LKMA 3HKZP 1IU6A 3RZDL 1PFYA 4A3ML 1SMWA 3ZG6A 1YK5A 2XJUA 1TWAL 4AYBP 1NXGA 2Z3QB 3SS2A 3PZAA 3GTOL 3GTPL 3MPSA 1DX8A 8RXNA 2L0ZA 1LKPA 3J7Y1 3MSUA 4G6BA 2XJPA 5IYBL 2PYAA 3P2AA 2PPTA 1NNQA 2A6ED 2O5JD 2R7ZL 2YU9L 3RZOL 3H9BA 4UY81 5FLML
chains in the Genus database with same CATH topology
3LNLA 5GAEc 2KKDA 2RDVA 1SMMA 4AHWA 4LHLA 2XJSA 4AR4A 2ERJA 2B5ID 3QVDA 4JAFA 3NFPI 3RZ6A 4POFA 4GS7D 1BRFA 1T9QA 1Z92B 4ZN3B 4B8CD 1CADA 1BE7A 4AI1A 1R0JA 1C09A 2XJQA 1BQ9A 1VZHA 2PVEA 3K35A 3PIP1 4JADA 1YV1A 5EIOC 1IU5A 2J9UB 2DSXA 3KYYA 1YK4A 2LCQA 4AI0A 5MF6A 2MS3A 3KYXA 1OWCA 4ME3A 4TPUA 3P8BA 2A68D 1ODHA 1RDVA 1JYBA 4TVMA 1RWDA 2V0EA 1IROA 1R0GA 2GMGA 3A44A 4XGHA 2JI1A 4POGA 2CKAA 5GADc 5EINC 4WFN1 2CR8A 1VZGA 2M4YA 5AI2A 1B2JA 2H12A 6RXNA 1ZRPA 2M4VA 5H1Sc 3PWFA 1R0FA 4AHYA 2XJTA 3WWNB 1BQ8A 5GAGc 4AI2A 1DVBA 1WJVA 3RZTA 1T9OA 5DM61 2VL6A 5JVG1 2BE5D 1R0HA 4U671 4YWLA 2HR5A 5GAHc 2Z3RB 3PKIA 2ERSA 1S2ZA 2C6AA 5IY0A 1RYQA 5AI3A 4K9FA 1T9PA 1S24A 1B71A 2C6BA 5K2ME 2JI2A 2V3BB 1LTLA 1QCVA 4E6YA 3KYWA 1VCXA 4YWMA 4LHNA 2A6HD 4AR5A 4XXBB 3B08B 1LKOA 1IW7D 1S30A 4JAEA 4ZN1B 3PIO1 5MFZA 2NYDA 2M6PA 1YUZA 3IU3I 5MGNA 5MLC3 2AYJA 1BFYA 2QL0A 1OWBA 2A69D 3B0AB 4AI3A 4AR3A 4RXNA 2K2DA 1IRNA 1LKMA 4JAGA 5MFPA 1FHMA 1SMUA 4AHXA 1IU6A 3WWLA 4V196 3J7Z1 1VZIA 1SMWA 1YK5A 2M6OA 3ZG6A 2KN9A 2XJUA 1R0IA 2PSMC 1NXGA 1B2OA 2Z3QB 3SS2A 3PKJA 3PZAA 4AHZA 2CKCA 3MPSA 1DX8A 5JVH1 1RDGA 4AR6A 8RXNA 1YUXA 2L0ZA 3KYUA 1RB9A 2XJVA 5DM71 1E8JA 1LKPA 5AN9H 2XJRA 3MSUA 4G6BA 2XJPA 3RYGA 3VPBE 3LPEB 2V0FA 2ZIXA 3J7Y1 1FHHA 7RXNA 1H7VA 2PYAA 3P2AA 1QYBA 1NNQA 1RYTA 2A6ED 2PPTA 2O5JD 5RXNA 3KYVA 3QQCE 2PVXA 1B13A 4UY81 1NXEA 1CAAA 2JI3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KKD A;  2RDV A;  1SMM A;  4AR4 A;  3QVD A;  3RZ6 A;  4POF A;  1BRF A;  1T9Q A;  1CAD A;  1BE7 A;  1R0J A;  1C09 A;  1BQ9 A;  2PVE A;  1YV1 A;  1IU5 A;  2LCQ A;  2DSX A;  3KYY A;  1YK4 A;  2MS3 A;  3KYX A;  4ME3 A;  4TPU A;  1RDV A;  1JYB A;  1RWD A;  1IRO A;  1R0G A;  2GMG A;  3A44 A;  4POG A;  2M4Y A;  5AI2 A;  1B2J A;  6RXN A;  1ZRP A;  3PWF A;  1R0F A;  1BQ8 A;  1DVB A;  3RZT A;  1T9O A;  2VL6 A;  1R0H A;  4YWL A;  2HR5 A;  1S2Z A;  5IY0 A;  5AI3 A;  4K9F A;  1T9P A;  1S24 A;  1B71 A;  2V3B B;  1LTL A;  1QCV A;  3KYW A;  1VCX A;  4YWM A;  4AR5 A;  1LKO A;  1S30 A;  1YUZ A;  1BFY A;  2QL0 A;  4AR3 A;  4RXN A;  2K2D A;  1IRN A;  1LKM A;  1FHM A;  1SMU A;  1IU6 A;  1SMW A;  1YK5 A;  2KN9 A;  1R0I A;  1B2O A;  3SS2 A;  3PZA A;  3MPS A;  1DX8 A;  1RDG A;  4AR6 A;  8RXN A;  1YUX A;  3KYU A;  1RB9 A;  1E8J A;  1LKP A;  3RYG A;  1FHH A;  7RXN A;  1H7V A;  2PYA A;  1QYB A;  1NNQ A;  1RYT A;  5RXN A;  3KYV A;  2PVX A;  1B13 A;  1CAA A; 
#chains in the Genus database with same CATH topology
 3LNL A;  2KKD A;  4AHW A;  4LHL A;  4C2M 1;  3QVD A;  4JAF A;  3PO2 L;  4A3L L;  1T9Q A;  4ZN3 B;  1BE7 A;  4AI1 A;  2NVY L;  1VZH A;  2JA8 L;  4JAD A;  5EIO C;  1R0G A;  4Y52 L;  2JA6 L;  3A44 A;  1WCM L;  2CKA A;  4WFN 1;  3PL5 A;  3HOV L;  1VZG A;  1B2J A;  4C3I L;  2WAQ P;  5GAG c;  5DM6 1;  2VL6 A;  1R0H A;  4YWL A;  2HR5 A;  2NVT L;  2C6A A;  1TWH L;  1S24 A;  2V3B B;  1LTL A;  4LHN A;  5MGN A;  1BFY A;  2HVY C;  5M3M L;  4A3B L;  5C3E L;  4JAG A;  3GTJ L;  1PFU A;  3WWL A;  2WB1 P;  2R92 L;  2KN9 A;  3I4N L;  1B2O A;  3PKJ A;  4AHZ A;  2E2H L;  5JVH 1;  1I50 L;  3S14 L;  1RB9 A;  5IYC L;  1E8J A;  3RYG A;  1FHH A;  3S2H L;  1B13 A;  1NXE A;  3HJW B;  2RFK B;  3S1N L;  4AR4 A;  2ERJ A;  3RZ6 A;  3H9C A;  3H3V M;  2VUM L;  1I6H L;  1C09 A;  3HJY B;  3K35 A;  1PFV A;  1YV1 A;  2DSX A;  1YK4 A;  3KYX A;  1OWC A;  2A68 D;  1RDV A;  1JYB A;  4TVM A;  3LWR B;  1IRO A;  3LWQ B;  3CQZ L;  6RXN A;  1ZRP A;  2B63 L;  3PWF A;  1TWF L;  4AHY A;  2XJT A;  3WWN B;  4AI2 A;  3RZT A;  2JA5 L;  4QIW P;  5JVG 1;  2BE5 D;  4U67 1;  5GAH c;  3LWO B;  4A3F L;  4BY7 L;  5M3F L;  4K9F A;  1B71 A;  2C6B A;  3I4M L;  3S1Q L;  3S2D L;  4E6Y A;  1VCX A;  2A6H D;  4A3G L;  3M4O L;  3B08 B;  1LKO A;  1IW7 D;  4ZN1 B;  5MFZ A;  3HOZ L;  3IU3 I;  1SFO L;  2AYJ A;  2A69 D;  4AI3 A;  5FJ8 L;  2K2D A;  5MFP A;  2AQC A;  1SMU A;  4BY1 L;  4A3J L;  4V19 6;  2NVQ L;  3GTM L;  3S15 L;  1R0I A;  1QQT A;  5C44 L;  2CKC A;  1RDG A;  4AR6 A;  1YUX A;  2XJV A;  5DM7 1;  3VPB E;  3LPE B;  2V0F A;  7RXN A;  3MQK B;  3S16 L;  1RYT A;  3S1M L;  2AUS B;  3KYV A;  3J7Z 1;  1CAA A;  5GAE c;  2RDV A;  1SMM A;  2XJS A;  3GTL L;  3PO3 L;  2B5I D;  3FDJ A;  1BRF A;  1Y1W L;  1R0J A;  4A3E L;  1Y1V L;  2XJQ A;  1BQ9 A;  2PVE A;  2JA7 L;  3PIP 1;  2LCQ A;  1F4L A;  3KYY A;  5MF6 A;  4A3K L;  3HOW L;  1RWD A;  4C3H L;  2GMG A;  2JI1 A;  3LWP B;  4A3I L;  5EIN C;  5AI2 A;  2H12 A;  4BBS L;  5H1S c;  2E2J L;  5IYD L;  3GTQ L;  1WJV A;  4BXX L;  2Z3R B;  3PKI A;  2ERS A;  5IY0 A;  1RYQ A;  5AI3 A;  1T9P A;  5K2M E;  3HOU L;  3HOY L;  1K83 L;  1QCV A;  1P7P A;  3KYW A;  5C4X L;  4XXB B;  1S30 A;  4JAE A;  2NVX L;  2M6P A;  4X6A L;  4A3D L;  5MLC 3;  2QL0 A;  1OWB A;  4AR3 A;  3FKI L;  1IRN A;  3GTK L;  5M5W L;  1FHM A;  4AHX A;  2E2I L;  1VZI A;  2PMZ P;  2M6O A;  2PSM C;  2R93 L;  3K7A L;  4BBR L;  3KYU A;  4A93 L;  5AN9 H;  2XJR A;  4A3C L;  2ZIX A;  3H0G L;  1H7V A;  1QYB A;  5RXN A;  3QQC E;  2PVX A;  2JI3 A;  5C4J L;  3S1R L;  3NFP I;  1PFW A;  4POF A;  4GS7 D;  1Z92 B;  4B8C D;  1I3Q L;  1CAD A;  1TWG L;  3JR7 A;  3H99 A;  3S17 L;  3HOX L;  1IU5 A;  2J9U B;  4AI0 A;  2MS3 A;  4ME3 A;  4TPU A;  3H97 A;  3P8B A;  1ODH A;  1PZX A;  2V0E A;  4XGH A;  4POG A;  5GAD c;  4C3J L;  2CR8 A;  1TWC L;  2M4Y A;  3M3Y L;  3LWV B;  2M4V A;  1R0F A;  1BQ8 A;  1DVB A;  1T9O A;  5M5X L;  5IP7 L;  3GTG L;  5M5Y L;  1S2Z A;  1R9T L;  4Y7N L;  2JI2 A;  2Y0S P;  2APO B;  3HAX C;  4YWM A;  4AR5 A;  2EY4 E;  3PIO 1;  2NYD A;  1YUZ A;  5IP9 L;  3B0A B;  4RXN A;  1LKM A;  3HKZ P;  1IU6 A;  3RZD L;  1PFY A;  4A3M L;  1SMW A;  3ZG6 A;  1YK5 A;  2XJU A;  1TWA L;  4AYB P;  1NXG A;  2Z3Q B;  3SS2 A;  3PZA A;  3GTO L;  3GTP L;  3MPS A;  1DX8 A;  8RXN A;  2L0Z A;  1LKP A;  3J7Y 1;  3MSU A;  4G6B A;  2XJP A;  5IYB L;  2PYA A;  3P2A A;  2PPT A;  1NNQ A;  2A6E D;  2O5J D;  2R7Z L;  2YU9 L;  3RZO L;  3H9B A;  4UY8 1;  5FLM L; 
#chains in the Genus database with same CATH homology
 3LNL A;  5GAE c;  2KKD A;  2RDV A;  1SMM A;  4AHW A;  4LHL A;  2XJS A;  4AR4 A;  2ERJ A;  2B5I D;  3QVD A;  4JAF A;  3NFP I;  3RZ6 A;  4POF A;  4GS7 D;  1BRF A;  1T9Q A;  1Z92 B;  4ZN3 B;  4B8C D;  1CAD A;  1BE7 A;  4AI1 A;  1R0J A;  1C09 A;  2XJQ A;  1BQ9 A;  1VZH A;  2PVE A;  3K35 A;  3PIP 1;  4JAD A;  1YV1 A;  5EIO C;  1IU5 A;  2J9U B;  2DSX A;  3KYY A;  1YK4 A;  2LCQ A;  4AI0 A;  5MF6 A;  2MS3 A;  3KYX A;  1OWC A;  4ME3 A;  4TPU A;  3P8B A;  2A68 D;  1ODH A;  1RDV A;  1JYB A;  4TVM A;  1RWD A;  2V0E A;  1IRO A;  1R0G A;  2GMG A;  3A44 A;  4XGH A;  2JI1 A;  4POG A;  2CKA A;  5GAD c;  5EIN C;  4WFN 1;  2CR8 A;  1VZG A;  2M4Y A;  5AI2 A;  1B2J A;  2H12 A;  6RXN A;  1ZRP A;  2M4V A;  5H1S c;  3PWF A;  1R0F A;  4AHY A;  2XJT A;  3WWN B;  1BQ8 A;  5GAG c;  4AI2 A;  1DVB A;  1WJV A;  3RZT A;  1T9O A;  5DM6 1;  2VL6 A;  5JVG 1;  2BE5 D;  1R0H A;  4U67 1;  4YWL A;  2HR5 A;  5GAH c;  2Z3R B;  3PKI A;  2ERS A;  1S2Z A;  2C6A A;  5IY0 A;  1RYQ A;  5AI3 A;  4K9F A;  1T9P A;  1S24 A;  1B71 A;  2C6B A;  5K2M E;  2JI2 A;  2V3B B;  1LTL A;  1QCV A;  4E6Y A;  3KYW A;  1VCX A;  4YWM A;  4LHN A;  2A6H D;  4AR5 A;  4XXB B;  3B08 B;  1LKO A;  1IW7 D;  1S30 A;  4JAE A;  4ZN1 B;  3PIO 1;  5MFZ A;  2NYD A;  2M6P A;  1YUZ A;  3IU3 I;  5MGN A;  5MLC 3;  2AYJ A;  1BFY A;  2QL0 A;  1OWB A;  2A69 D;  3B0A B;  4AI3 A;  4AR3 A;  4RXN A;  2K2D A;  1IRN A;  1LKM A;  4JAG A;  5MFP A;  1FHM A;  1SMU A;  4AHX A;  1IU6 A;  3WWL A;  4V19 6;  3J7Z 1;  1VZI A;  1SMW A;  1YK5 A;  2M6O A;  3ZG6 A;  2KN9 A;  2XJU A;  1R0I A;  2PSM C;  1NXG A;  1B2O A;  2Z3Q B;  3SS2 A;  3PKJ A;  3PZA A;  4AHZ A;  2CKC A;  3MPS A;  1DX8 A;  5JVH 1;  1RDG A;  4AR6 A;  8RXN A;  1YUX A;  2L0Z A;  3KYU A;  1RB9 A;  2XJV A;  5DM7 1;  1E8J A;  1LKP A;  5AN9 H;  2XJR A;  3MSU A;  4G6B A;  2XJP A;  3RYG A;  3VPB E;  3LPE B;  2V0F A;  2ZIX A;  3J7Y 1;  1FHH A;  7RXN A;  1H7V A;  2PYA A;  3P2A A;  1QYB A;  1NNQ A;  1RYT A;  2A6E D;  2PPT A;  2O5J D;  5RXN A;  3KYV A;  3QQC E;  2PVX A;  1B13 A;  4UY8 1;  1NXE A;  1CAA A;  2JI3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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