1E93A

High resolution structure and biochemical properties of a recombinant catalase depleted in iron
Total Genus 154
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
154
sequence length
476
structure length
475
Chain Sequence
KKLTTAAGAPVVDNNNVITAGPRGPMLLQDVWFLEKLAHFDREVIPERRHAKGSGAFGTFTVTHDITKYTRAKIFSEVGKKTEMFARFSTVAGERGAADAERDIRGFALKFYTEEGNWDMVGNNTPVFYLRDPLKFPDLNHIVKRDPRTNMRNMAYKWDFFSHLPESLHQLTIDMSDRGLPLSYRFVHGFGSHTYSFINKDNERFWVKFHFRCQQGIKNLMDDEAEALVGKDRESSQRDLFEAIKRGDYPRWKLQIQIMPEKEASTVPYNPFDLTKVWPHADYPLMDVGYFELNRNPDNYFSDVEQAAFSPANIVPGISFSPDKMLQGRLFSYGDAHRYRLGVNHHQIPVNAPKCPFHNYHRDGAMRVDGNSGNGITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDYFSQPRALYELLSDDEHQRMFARIAGELSQASKETQQRQIDLFTKVHPEYGAGVEKAIKVLE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords CATALASE
publication title High-Resolution Structure and Biochemical Properties of a Recombinant Proteus Mirabilis Catalase Depleted in Iron.
pubmed doi rcsb
source organism Proteus mirabilis
total genus 154
structure length 475
sequence length 476
ec nomenclature ec 1.11.1.6: Catalase.
pdb deposition date 2000-10-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00199 Catalase Catalase
A PF06628 Catalase-rel Catalase-related immune-responsive
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.180.10 Mainly Beta Beta Barrel Catalase HpII, Chain A, domain 1 Catalase core domain 1e93A00
1GGJA 4AUNA 1GWFA 4AUEA 4QOPA 4ENPA 1GG9A 4ENQA 1P7ZA 1P80A 4ENTA 1U5UA 2CAGA 1M85A 1GGHA 1CF9A 1NM0A 4QOOA 4ENVA 1GGKA 4AUMA 3TTTA 4QONA 4ENUA 3TTXA 1HBZA 3ZJ5A 4AULA 1MQFA 1GWHA 2IUFA 3P9SA 3TTUA 1P7YA 1M7SA 3PQ6A 4QOQA 2XF2A 3PQ5A 4ENWA 3VU3A 3P9PA 1GGEA 4QOMA 4B31A 3ZJ4A 1SI8A 4CABA 4B5KA 1F4JA 1QWLA 2CAHA 4B40A 1P81A 3HB6A 4B7AA 4B2YA 2A9EA 4ENRA 3TTVA 5BV2P 1A4EA 1QWMA 2IQFA 1QF7A 3EJ6A 4AJ9A 3PQ7A 4BFLA 2XQ1A 1GWEA 1SY7A 3P9QA 3P9RA 4QOLA 2ISAA 1GGFA 3PQ2A 1QWSA 3DY5A 4BIMA 2J2MA 3TTWA 1H6NA 1E93A 4ENSA 1H7KA 3PQ3A 1IPHA 3PQ4A 4QORA 3PQ8A 4E37A
chains in the Genus database with same CATH superfamily
3NWLA 1GGJA 4AUNA 1GWFA 4AUEA 4QOPA 4ENPA 1DGHA 1GG9A 1TGUA 4ENQA 1P7ZA 1P80A 4ENTA 1U5UA 2CAGA 1M85A 7CATA 1GGHA 1CF9A 1NM0A 4QOOA 4ENVA 1GGKA 4AUMA 1QQWA 3TTTA 4QONA 4ENUA 3TTXA 1HBZA 4B7HA 3ZJ5A 4AULA 1MQFA 1GWHA 2IUFA 3P9SA 3TTUA 1P7YA 1M7SA 3PQ6A 4QOQA 2XF2A 3PQ5A 4ENWA 3RGPA 3VU3A 3P9PA 1GGEA 3RE8A 4QOMA 1DGGA 4B31A 3ZJ4A 1SI8A 4CABA 4B5KA 1DGHB 3RGSA 1F4JA 1QWLA 2CAHA 4B40A 1P81A 3HB6A 4B7AA 4B2YA 4B7GA 2A9EA 1TH2A 1TH3A 4ENRA 3TTVA 1DGFA 5BV2P 1A4EA 1QWMA 1TH4A 2IQFA 1QF7A 3EJ6A 4AJ9A 4B7FA 4BLCA 3J7BA 3PQ7A 3E4WA 4BFLA 2XQ1A 3E4YA 1GWEA 1SY7A 3P9QA 3P9RA 4QOLA 5GKNA 2ISAA 1GGFA 3PQ2A 1QWSA 3DY5A 4BIMA 2J2MA 3TTWA 1H6NA 1E93A 4ENSA 1H7KA 1DGBA 3PQ3A 1IPHA 3PQ4A 4QORA 3PQ8A 4E37A 8CATA
chains in the Genus database with same CATH topology
1GGJA 4AUNA 1GWFA 4AUEA 4QOPA 4ENPA 1GG9A 4ENQA 1P7ZA 1P80A 4ENTA 1U5UA 2CAGA 1M85A 1GGHA 1CF9A 1NM0A 4QOOA 4ENVA 1GGKA 4AUMA 3TTTA 4QONA 4ENUA 3TTXA 1HBZA 3ZJ5A 4AULA 1MQFA 1GWHA 2IUFA 3P9SA 3TTUA 1P7YA 1M7SA 3PQ6A 4QOQA 2XF2A 3PQ5A 4ENWA 3VU3A 3P9PA 1GGEA 4QOMA 4B31A 3ZJ4A 1SI8A 4CABA 4B5KA 1F4JA 1QWLA 2CAHA 4B40A 1P81A 3HB6A 4B7AA 4B2YA 2A9EA 4ENRA 3TTVA 5BV2P 1A4EA 1QWMA 2IQFA 1QF7A 3EJ6A 4AJ9A 3PQ7A 4BFLA 2XQ1A 1GWEA 1SY7A 3P9QA 3P9RA 4QOLA 2ISAA 1GGFA 3PQ2A 1QWSA 3DY5A 4BIMA 2J2MA 3TTWA 1H6NA 1E93A 4ENSA 1H7KA 3PQ3A 1IPHA 3PQ4A 4QORA 3PQ8A 4E37A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1GGJ A;  4AUN A;  1GWF A;  4AUE A;  4QOP A;  4ENP A;  1GG9 A;  4ENQ A;  1P7Z A;  1P80 A;  4ENT A;  1U5U A;  2CAG A;  1M85 A;  1GGH A;  1CF9 A;  1NM0 A;  4QOO A;  4ENV A;  1GGK A;  4AUM A;  3TTT A;  4QON A;  4ENU A;  3TTX A;  1HBZ A;  3ZJ5 A;  4AUL A;  1MQF A;  1GWH A;  2IUF A;  3P9S A;  3TTU A;  1P7Y A;  1M7S A;  3PQ6 A;  4QOQ A;  2XF2 A;  3PQ5 A;  4ENW A;  3VU3 A;  3P9P A;  1GGE A;  4QOM A;  4B31 A;  3ZJ4 A;  1SI8 A;  4CAB A;  4B5K A;  1F4J A;  1QWL A;  2CAH A;  4B40 A;  1P81 A;  3HB6 A;  4B7A A;  4B2Y A;  2A9E A;  4ENR A;  3TTV A;  5BV2 P;  1A4E A;  1QWM A;  2IQF A;  1QF7 A;  3EJ6 A;  4AJ9 A;  3PQ7 A;  4BFL A;  2XQ1 A;  1GWE A;  1SY7 A;  3P9Q A;  3P9R A;  4QOL A;  2ISA A;  1GGF A;  3PQ2 A;  1QWS A;  3DY5 A;  4BIM A;  2J2M A;  3TTW A;  1H6N A;  1E93 A;  4ENS A;  1H7K A;  3PQ3 A;  1IPH A;  3PQ4 A;  4QOR A;  3PQ8 A;  4E37 A; 
#chains in the Genus database with same CATH topology
 3NWL A;  1GGJ A;  4AUN A;  1GWF A;  4AUE A;  4QOP A;  4ENP A;  1DGH A;  1GG9 A;  1TGU A;  4ENQ A;  1P7Z A;  1P80 A;  4ENT A;  1U5U A;  2CAG A;  1M85 A;  7CAT A;  1GGH A;  1CF9 A;  1NM0 A;  4QOO A;  4ENV A;  1GGK A;  4AUM A;  1QQW A;  3TTT A;  4QON A;  4ENU A;  3TTX A;  1HBZ A;  4B7H A;  3ZJ5 A;  4AUL A;  1MQF A;  1GWH A;  2IUF A;  3P9S A;  3TTU A;  1P7Y A;  1M7S A;  3PQ6 A;  4QOQ A;  2XF2 A;  3PQ5 A;  4ENW A;  3RGP A;  3VU3 A;  3P9P A;  1GGE A;  3RE8 A;  4QOM A;  1DGG A;  4B31 A;  3ZJ4 A;  1SI8 A;  4CAB A;  4B5K A;  1DGH B;  3RGS A;  1F4J A;  1QWL A;  2CAH A;  4B40 A;  1P81 A;  3HB6 A;  4B7A A;  4B2Y A;  4B7G A;  2A9E A;  1TH2 A;  1TH3 A;  4ENR A;  3TTV A;  1DGF A;  5BV2 P;  1A4E A;  1QWM A;  1TH4 A;  2IQF A;  1QF7 A;  3EJ6 A;  4AJ9 A;  4B7F A;  4BLC A;  3J7B A;  3PQ7 A;  3E4W A;  4BFL A;  2XQ1 A;  3E4Y A;  1GWE A;  1SY7 A;  3P9Q A;  3P9R A;  4QOL A;  5GKN A;  2ISA A;  1GGF A;  3PQ2 A;  1QWS A;  3DY5 A;  4BIM A;  2J2M A;  3TTW A;  1H6N A;  1E93 A;  4ENS A;  1H7K A;  1DGB A;  3PQ3 A;  1IPH A;  3PQ4 A;  4QOR A;  3PQ8 A;  4E37 A;  8CAT A; 
#chains in the Genus database with same CATH homology
 1GGJ A;  4AUN A;  1GWF A;  4AUE A;  4QOP A;  4ENP A;  1GG9 A;  4ENQ A;  1P7Z A;  1P80 A;  4ENT A;  1U5U A;  2CAG A;  1M85 A;  1GGH A;  1CF9 A;  1NM0 A;  4QOO A;  4ENV A;  1GGK A;  4AUM A;  3TTT A;  4QON A;  4ENU A;  3TTX A;  1HBZ A;  3ZJ5 A;  4AUL A;  1MQF A;  1GWH A;  2IUF A;  3P9S A;  3TTU A;  1P7Y A;  1M7S A;  3PQ6 A;  4QOQ A;  2XF2 A;  3PQ5 A;  4ENW A;  3VU3 A;  3P9P A;  1GGE A;  4QOM A;  4B31 A;  3ZJ4 A;  1SI8 A;  4CAB A;  4B5K A;  1F4J A;  1QWL A;  2CAH A;  4B40 A;  1P81 A;  3HB6 A;  4B7A A;  4B2Y A;  2A9E A;  4ENR A;  3TTV A;  5BV2 P;  1A4E A;  1QWM A;  2IQF A;  1QF7 A;  3EJ6 A;  4AJ9 A;  3PQ7 A;  4BFL A;  2XQ1 A;  1GWE A;  1SY7 A;  3P9Q A;  3P9R A;  4QOL A;  2ISA A;  1GGF A;  3PQ2 A;  1QWS A;  3DY5 A;  4BIM A;  2J2M A;  3TTW A;  1H6N A;  1E93 A;  4ENS A;  1H7K A;  3PQ3 A;  1IPH A;  3PQ4 A;  4QOR A;  3PQ8 A;  4E37 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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