1EB4A

Histidine ammonia-lyase (hal) mutant f329a from pseudomonas putida
Total Genus 205
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
sequence length
507
structure length
506
Chain Sequence
b'TELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVLSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGDLAPLAHMSLVLLGEGKARYKGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNAHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKARQALRSEVAHYDRDRFFAPDIEKAVELLAKGSLTGLLPAGVLPSL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords HISTIDINE AMMONIA-LYASE
publication title Autocatalytic Peptide Cyclization During Chain Folding of Histidine Ammonia-Lyase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Lyase
total genus 205
structure length 506
sequence length 507
ec nomenclature ec 4.3.1.3: Histidine ammonia-lyase.
pdb deposition date 2001-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1eb4A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1eb4A02
2O7BA 2YIIA 4FLCA 1FUPA 4C6GA 4HGVA 4V2QA 4BAAA 3RRPA 2PFMA 1Q5NA 4APAA 4EFCA 2X75A 1YFMA 2NYNA 3KDYA 2RJRA 3BHGA 4ADLA 2O7FA 4CQ5A 1XWOA 2HVGA 3C8TA 1GK3A 1K7WA 2NYFA 4V2RA 1B8FA 5HW2A 2E9FA 1KQ7A 4EEIA 1YISA 1T6PA 3OCFA 3KDZA 4BABA 5D6BA 4C5UA 1GKMA 3GZHA 4FFXA 1GK2A 3QBPA 3E04A 1I0AA 1TJVA 3NZ4A 1FURA 1HY0A 1TJ7A 2FUSA 1AUWA 4APBA 1C3CA 1DOFA 3UNVA 1JSWA 4ADMA 1RE5A 5EYTA 1J3UA 4C5SA 1U16A 1TJWA 5F92A 5EYVA 1FUOA 2O78A 1VDKA 2VD6A 2PTRA 2OHYA 2RJSA 3OCEA 1TJUA 3RD8A 2O6YA 2QVEA 1GKJA 4MX2A 1U15A 1EB4A 3TV2A 3NO9A 3R6YA 2J91A 3R6VA 2PTSA 3GTDA 1W27A 1HY1A 1K62A 1FUQA 1DCNA 4NSLA 3R6QA 3CZOA 2O7DA 4NLEA 1C3UA 5F91A 1Y2MA 1T6JA 2O7EA 4C5RA 1YFEA 2PTQA 2QGAB
chains in the Genus database with same CATH superfamily
2O7BA 2YIIA 4FLCA 1FUPA 4C6GA 4HGVA 4V2QA 1XLYA 4BAAA 2FELA 5M0JA 3RRPA 2PFMA 1Q5NA 4APAA 4EFCA 1XMCA 2X75A 1YFMA 2NYNA 3KDYA 2RJRA 3BHGA 4ADLA 2O7FA 4CQ5A 1XWOA 2HVGA 3C8TA 1GK3A 1K7WA 2NYFA 4V2RA 1B8FA 1XL8A 2E9FA 5HW2A 5H8WA 1KQ7A 4EEIA 1YISA 2VSFA 1T6PA 3OCFA 3KDZA 4BABA 5D6BA 4A15A 4C5UA 2VL7A 1GKMA 3GZHA 4FFXA 1GK2A 3QBPA 3CRVA 5M0IA 3E04A 1I0AA 1TJVA 3NZ4A 1FURA 1HY0A 1TJ7A 2FUSA 1AUWA 4APBA 1C3CA 1DOFA 3UNVA 1JSWA 4ADMA 1RE5A 5EYTA 1J3UA 4C5SA 1U16A 1TJWA 5F92A 5EYVA 1FUOA 2O78A 1VDKA 2VD6A 2PTRA 2OHYA 2RJSA 3OCEA 1TJUA 3RD8A 1XL7A 2O6YA 2QVEA 1GKJA 4MX2A 1U15A 1EB4A 3TV2A 1XMDA 3NO9A 3R6YA 2J91A 3R6VA 2PTSA 3GTDA 1W27A 1HY1A 1K62A 1FUQA 1DCNA 4NSLA 3R6QA 3CZOA 2O7DA 4NLEA 3CRW1 1C3UA 5F91A 1Y2MA 1T6JA 2O7EA 4C5RA 2FENA 1YFEA 2PTQA 4WNLA 2QGAB
chains in the Genus database with same CATH topology
2O7BA 2YIIA 4FLCA 1FUPA 4C6GA 4HGVA 4V2QA 4BAAA 3RRPA 2PFMA 1Q5NA 4APAA 4EFCA 2X75A 1YFMA 2NYNA 3KDYA 2RJRA 3BHGA 4ADLA 2O7FA 4CQ5A 1XWOA 2HVGA 3C8TA 1GK3A 1K7WA 2NYFA 4V2RA 1B8FA 5HW2A 2E9FA 1KQ7A 4EEIA 1YISA 1T6PA 3OCFA 3KDZA 4BABA 5D6BA 4C5UA 1GKMA 3GZHA 4FFXA 1GK2A 3QBPA 3E04A 1I0AA 1TJVA 3NZ4A 1FURA 1HY0A 1TJ7A 2FUSA 1AUWA 4APBA 1C3CA 1DOFA 3UNVA 1JSWA 4ADMA 1RE5A 5EYTA 1J3UA 4C5SA 1U16A 1TJWA 5F92A 5EYVA 1FUOA 2O78A 1VDKA 2VD6A 2PTRA 2OHYA 2RJSA 3OCEA 1TJUA 3RD8A 2O6YA 2QVEA 1GKJA 4MX2A 1U15A 1EB4A 3TV2A 3NO9A 3R6YA 2J91A 3R6VA 2PTSA 3GTDA 1W27A 1HY1A 1K62A 1FUQA 1DCNA 4NSLA 3R6QA 3CZOA 2O7DA 4NLEA 1C3UA 5F91A 1Y2MA 1T6JA 2O7EA 4C5RA 1YFEA 2PTQA 2QGAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O7B A;  2YII A;  4FLC A;  1FUP A;  4C6G A;  4HGV A;  4V2Q A;  4BAA A;  3RRP A;  2PFM A;  1Q5N A;  4APA A;  4EFC A;  2X75 A;  1YFM A;  2NYN A;  3KDY A;  2RJR A;  3BHG A;  4ADL A;  2O7F A;  4CQ5 A;  1XWO A;  2HVG A;  3C8T A;  1GK3 A;  1K7W A;  2NYF A;  4V2R A;  1B8F A;  5HW2 A;  2E9F A;  1KQ7 A;  4EEI A;  1YIS A;  1T6P A;  3OCF A;  3KDZ A;  4BAB A;  5D6B A;  4C5U A;  1GKM A;  3GZH A;  4FFX A;  1GK2 A;  3QBP A;  3E04 A;  1I0A A;  1TJV A;  3NZ4 A;  1FUR A;  1HY0 A;  1TJ7 A;  2FUS A;  1AUW A;  4APB A;  1C3C A;  1DOF A;  3UNV A;  1JSW A;  4ADM A;  1RE5 A;  5EYT A;  1J3U A;  4C5S A;  1U16 A;  1TJW A;  5F92 A;  5EYV A;  1FUO A;  2O78 A;  1VDK A;  2VD6 A;  2PTR A;  2OHY A;  2RJS A;  3OCE A;  1TJU A;  3RD8 A;  2O6Y A;  2QVE A;  1GKJ A;  4MX2 A;  1U15 A;  1EB4 A;  3TV2 A;  3NO9 A;  3R6Y A;  2J91 A;  3R6V A;  2PTS A;  3GTD A;  1W27 A;  1HY1 A;  1K62 A;  1FUQ A;  1DCN A;  4NSL A;  3R6Q A;  3CZO A;  2O7D A;  4NLE A;  1C3U A;  5F91 A;  1Y2M A;  1T6J A;  2O7E A;  4C5R A;  1YFE A;  2PTQ A;  2QGA B; 
#chains in the Genus database with same CATH topology
 2O7B A;  2YII A;  4FLC A;  1FUP A;  4C6G A;  4HGV A;  4V2Q A;  1XLY A;  4BAA A;  2FEL A;  5M0J A;  3RRP A;  2PFM A;  1Q5N A;  4APA A;  4EFC A;  1XMC A;  2X75 A;  1YFM A;  2NYN A;  3KDY A;  2RJR A;  3BHG A;  4ADL A;  2O7F A;  4CQ5 A;  1XWO A;  2HVG A;  3C8T A;  1GK3 A;  1K7W A;  2NYF A;  4V2R A;  1B8F A;  1XL8 A;  2E9F A;  5HW2 A;  5H8W A;  1KQ7 A;  4EEI A;  1YIS A;  2VSF A;  1T6P A;  3OCF A;  3KDZ A;  4BAB A;  5D6B A;  4A15 A;  4C5U A;  2VL7 A;  1GKM A;  3GZH A;  4FFX A;  1GK2 A;  3QBP A;  3CRV A;  5M0I A;  3E04 A;  1I0A A;  1TJV A;  3NZ4 A;  1FUR A;  1HY0 A;  1TJ7 A;  2FUS A;  1AUW A;  4APB A;  1C3C A;  1DOF A;  3UNV A;  1JSW A;  4ADM A;  1RE5 A;  5EYT A;  1J3U A;  4C5S A;  1U16 A;  1TJW A;  5F92 A;  5EYV A;  1FUO A;  2O78 A;  1VDK A;  2VD6 A;  2PTR A;  2OHY A;  2RJS A;  3OCE A;  1TJU A;  3RD8 A;  1XL7 A;  2O6Y A;  2QVE A;  1GKJ A;  4MX2 A;  1U15 A;  1EB4 A;  3TV2 A;  1XMD A;  3NO9 A;  3R6Y A;  2J91 A;  3R6V A;  2PTS A;  3GTD A;  1W27 A;  1HY1 A;  1K62 A;  1FUQ A;  1DCN A;  4NSL A;  3R6Q A;  3CZO A;  2O7D A;  4NLE A;  3CRW 1;  1C3U A;  5F91 A;  1Y2M A;  1T6J A;  2O7E A;  4C5R A;  2FEN A;  1YFE A;  2PTQ A;  4WNL A;  2QGA B; 
#chains in the Genus database with same CATH homology
 2O7B A;  2YII A;  4FLC A;  1FUP A;  4C6G A;  4HGV A;  4V2Q A;  4BAA A;  3RRP A;  2PFM A;  1Q5N A;  4APA A;  4EFC A;  2X75 A;  1YFM A;  2NYN A;  3KDY A;  2RJR A;  3BHG A;  4ADL A;  2O7F A;  4CQ5 A;  1XWO A;  2HVG A;  3C8T A;  1GK3 A;  1K7W A;  2NYF A;  4V2R A;  1B8F A;  5HW2 A;  2E9F A;  1KQ7 A;  4EEI A;  1YIS A;  1T6P A;  3OCF A;  3KDZ A;  4BAB A;  5D6B A;  4C5U A;  1GKM A;  3GZH A;  4FFX A;  1GK2 A;  3QBP A;  3E04 A;  1I0A A;  1TJV A;  3NZ4 A;  1FUR A;  1HY0 A;  1TJ7 A;  2FUS A;  1AUW A;  4APB A;  1C3C A;  1DOF A;  3UNV A;  1JSW A;  4ADM A;  1RE5 A;  5EYT A;  1J3U A;  4C5S A;  1U16 A;  1TJW A;  5F92 A;  5EYV A;  1FUO A;  2O78 A;  1VDK A;  2VD6 A;  2PTR A;  2OHY A;  2RJS A;  3OCE A;  1TJU A;  3RD8 A;  2O6Y A;  2QVE A;  1GKJ A;  4MX2 A;  1U15 A;  1EB4 A;  3TV2 A;  3NO9 A;  3R6Y A;  2J91 A;  3R6V A;  2PTS A;  3GTD A;  1W27 A;  1HY1 A;  1K62 A;  1FUQ A;  1DCN A;  4NSL A;  3R6Q A;  3CZO A;  2O7D A;  4NLE A;  1C3U A;  5F91 A;  1Y2M A;  1T6J A;  2O7E A;  4C5R A;  1YFE A;  2PTQ A;  2QGA B; 
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