1EB4A

Histidine ammonia-lyase (hal) mutant f329a from pseudomonas putida
Total Genus 205
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
205
sequence length
507
structure length
506
Chain Sequence
TELTLKPGTLTLAQLRAIHAAPVRLQLDASAAPAIDASVACVEQIIAEDRTAYGINTGFGLLASTRIASHDLENLQRSLVLSHAAGIGAPLDDDLVRLIMVLKINSLSRGFSGIRRKVIDALIALVNAEVYPHIPLKGSVGDLAPLAHMSLVLLGEGKARYKGQWLSATEALAVAGLEPLTLAAKEGLALLNGTQASTAYALRGLFYAEDLYAAAIACGGLSVEAVLGSRSPFDARIHEARGQRGQIDTAACFRDLLGDSSEVSLSHKNADKVQDPYSLRCQPQVMGACLTQLRQAAEVLGIEANAVSDNPLVFAAEGDVISGGNAHAEPVAMAADNLALAIAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKARQALRSEVAHYDRDRFFAPDIEKAVELLAKGSLTGLLPAGVLPSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Autocatalytic Peptide Cyclization During Chain Folding of Histidine Ammonia-Lyase.
pubmed doi rcsb
source organism Pseudomonas putida
molecule tags Lyase
molecule keywords HISTIDINE AMMONIA-LYASE
total genus 205
structure length 506
sequence length 507
ec nomenclature ec 4.3.1.3: Histidine ammonia-lyase.
pdb deposition date 2001-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00221 Lyase_aromatic Aromatic amino acid lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.275.10 Mainly Alpha Orthogonal Bundle Fumarase C; Chain B, domain 1 Fumarase/aspartase (N-terminal domain) 1eb4A01
1.20.200.10 Mainly Alpha Up-down Bundle Fumarase C; Chain A, domain 2 Fumarase/aspartase (Central domain) 1eb4A02
1K7WA 3R6QA 2NYNA 1U15A 2QGAB 1W27A 2QVEA 3NZ4A 2RJRA 5F91A 3R6YA 4CQ5A 5EYVA 1FURA 2NYFA 3RRPA 4BAAA 1Y2MA 3KDYA 4ADLA 3OCFA 5D6BA 2OHYA 3NO9A 1T6PA 4FLCA 4NSLA 4APAA 4MX2A 2YIIA 4APBA 3QBPA 1FUOA 4FFXA 2FUSA 2PTSA 1K62A 1J3UA 2O7FA 5HW2A 1GKMA 3GZHA 4C5UA 1DCNA 2E9FA 1C3CA 1FUQA 4EEIA 1TJ7A 1JSWA 4V2QA 4C5RA 1HY1A 3CZOA 2O78A 4EFCA 4ADMA 3BHGA 1U16A 4C6GA 1I0AA 2PFMA 3C8TA 5F92A 3TV2A 2PTQA 4V2RA 2RJSA 2O6YA 3OCEA 4C5SA 2O7DA 2O7EA 1EB4A 1GKJA 1KQ7A 1TJVA 1RE5A 2X75A 1C3UA 3GTDA 1DOFA 1T6JA 2O7BA 2HVGA 1GK3A 3E04A 1FUPA 1TJWA 1AUWA 1YFMA 4NLEA 1YISA 1HY0A 3RD8A 2J91A 3UNVA 5EYTA 3R6VA 3KDZA 1VDKA 4BABA 2VD6A 1B8FA 1YFEA 1TJUA 4HGVA 2PTRA 1GK2A 1Q5NA 1XWOA
chains in the Genus database with same CATH superfamily
1K7WA 3R6QA 2NYNA 1U15A 2QGAB 1W27A 4WNLA 2VSFA 2QVEA 3NZ4A 4A15A 2RJRA 5F91A 3R6YA 4CQ5A 1XL7A 5EYVA 1FURA 2NYFA 3RRPA 4BAAA 5M0JA 1Y2MA 3KDYA 4ADLA 3CRVA 3OCFA 5D6BA 2OHYA 3NO9A 1T6PA 4FLCA 4NSLA 4APAA 4MX2A 2YIIA 4APBA 3QBPA 1FUOA 4FFXA 2FUSA 2PTSA 1K62A 1J3UA 2O7FA 5HW2A 1GKMA 3GZHA 4C5UA 1XMDA 1DCNA 2E9FA 1C3CA 1FUQA 4EEIA 1TJ7A 1JSWA 4V2QA 4C5RA 1HY1A 3CZOA 2O78A 4EFCA 4ADMA 3BHGA 3CRW1 1XL8A 1U16A 4C6GA 1I0AA 2PFMA 3C8TA 5F92A 1XMCA 3TV2A 2VL7A 2PTQA 4V2RA 2RJSA 2O6YA 3OCEA 4C5SA 2O7DA 2O7EA 1EB4A 1GKJA 2FELA 1KQ7A 1TJVA 1RE5A 2X75A 1C3UA 3GTDA 1DOFA 1XLYA 1T6JA 2O7BA 2HVGA 1GK3A 3E04A 1FUPA 1TJWA 1AUWA 5M0IA 1YFMA 4NLEA 1YISA 1HY0A 3RD8A 2J91A 3UNVA 5H8WA 5EYTA 3R6VA 3KDZA 1VDKA 4BABA 2VD6A 1B8FA 1YFEA 1TJUA 4HGVA 2FENA 2PTRA 1GK2A 1Q5NA 1XWOA
chains in the Genus database with same CATH topology
1K7WA 3R6QA 2NYNA 1U15A 2QGAB 1W27A 2QVEA 3NZ4A 2RJRA 5F91A 3R6YA 4CQ5A 5EYVA 1FURA 2NYFA 3RRPA 4BAAA 1Y2MA 3KDYA 4ADLA 3OCFA 5D6BA 2OHYA 3NO9A 1T6PA 4FLCA 4NSLA 4APAA 4MX2A 2YIIA 4APBA 3QBPA 1FUOA 4FFXA 2FUSA 2PTSA 1K62A 1J3UA 2O7FA 5HW2A 1GKMA 3GZHA 4C5UA 1DCNA 2E9FA 1C3CA 1FUQA 4EEIA 1TJ7A 1JSWA 4V2QA 4C5RA 1HY1A 3CZOA 2O78A 4EFCA 4ADMA 3BHGA 1U16A 4C6GA 1I0AA 2PFMA 3C8TA 5F92A 3TV2A 2PTQA 4V2RA 2RJSA 2O6YA 3OCEA 4C5SA 2O7DA 2O7EA 1EB4A 1GKJA 1KQ7A 1TJVA 1RE5A 2X75A 1C3UA 3GTDA 1DOFA 1T6JA 2O7BA 2HVGA 1GK3A 3E04A 1FUPA 1TJWA 1AUWA 1YFMA 4NLEA 1YISA 1HY0A 3RD8A 2J91A 3UNVA 5EYTA 3R6VA 3KDZA 1VDKA 4BABA 2VD6A 1B8FA 1YFEA 1TJUA 4HGVA 2PTRA 1GK2A 1Q5NA 1XWOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K7W A;  3R6Q A;  2NYN A;  1U15 A;  2QGA B;  1W27 A;  2QVE A;  3NZ4 A;  2RJR A;  5F91 A;  3R6Y A;  4CQ5 A;  5EYV A;  1FUR A;  2NYF A;  3RRP A;  4BAA A;  1Y2M A;  3KDY A;  4ADL A;  3OCF A;  5D6B A;  2OHY A;  3NO9 A;  1T6P A;  4FLC A;  4NSL A;  4APA A;  4MX2 A;  2YII A;  4APB A;  3QBP A;  1FUO A;  4FFX A;  2FUS A;  2PTS A;  1K62 A;  1J3U A;  2O7F A;  5HW2 A;  1GKM A;  3GZH A;  4C5U A;  1DCN A;  2E9F A;  1C3C A;  1FUQ A;  4EEI A;  1TJ7 A;  1JSW A;  4V2Q A;  4C5R A;  1HY1 A;  3CZO A;  2O78 A;  4EFC A;  4ADM A;  3BHG A;  1U16 A;  4C6G A;  1I0A A;  2PFM A;  3C8T A;  5F92 A;  3TV2 A;  2PTQ A;  4V2R A;  2RJS A;  2O6Y A;  3OCE A;  4C5S A;  2O7D A;  2O7E A;  1EB4 A;  1GKJ A;  1KQ7 A;  1TJV A;  1RE5 A;  2X75 A;  1C3U A;  3GTD A;  1DOF A;  1T6J A;  2O7B A;  2HVG A;  1GK3 A;  3E04 A;  1FUP A;  1TJW A;  1AUW A;  1YFM A;  4NLE A;  1YIS A;  1HY0 A;  3RD8 A;  2J91 A;  3UNV A;  5EYT A;  3R6V A;  3KDZ A;  1VDK A;  4BAB A;  2VD6 A;  1B8F A;  1YFE A;  1TJU A;  4HGV A;  2PTR A;  1GK2 A;  1Q5N A;  1XWO A; 
#chains in the Genus database with same CATH topology
 1K7W A;  3R6Q A;  2NYN A;  1U15 A;  2QGA B;  1W27 A;  4WNL A;  2VSF A;  2QVE A;  3NZ4 A;  4A15 A;  2RJR A;  5F91 A;  3R6Y A;  4CQ5 A;  1XL7 A;  5EYV A;  1FUR A;  2NYF A;  3RRP A;  4BAA A;  5M0J A;  1Y2M A;  3KDY A;  4ADL A;  3CRV A;  3OCF A;  5D6B A;  2OHY A;  3NO9 A;  1T6P A;  4FLC A;  4NSL A;  4APA A;  4MX2 A;  2YII A;  4APB A;  3QBP A;  1FUO A;  4FFX A;  2FUS A;  2PTS A;  1K62 A;  1J3U A;  2O7F A;  5HW2 A;  1GKM A;  3GZH A;  4C5U A;  1XMD A;  1DCN A;  2E9F A;  1C3C A;  1FUQ A;  4EEI A;  1TJ7 A;  1JSW A;  4V2Q A;  4C5R A;  1HY1 A;  3CZO A;  2O78 A;  4EFC A;  4ADM A;  3BHG A;  3CRW 1;  1XL8 A;  1U16 A;  4C6G A;  1I0A A;  2PFM A;  3C8T A;  5F92 A;  1XMC A;  3TV2 A;  2VL7 A;  2PTQ A;  4V2R A;  2RJS A;  2O6Y A;  3OCE A;  4C5S A;  2O7D A;  2O7E A;  1EB4 A;  1GKJ A;  2FEL A;  1KQ7 A;  1TJV A;  1RE5 A;  2X75 A;  1C3U A;  3GTD A;  1DOF A;  1XLY A;  1T6J A;  2O7B A;  2HVG A;  1GK3 A;  3E04 A;  1FUP A;  1TJW A;  1AUW A;  5M0I A;  1YFM A;  4NLE A;  1YIS A;  1HY0 A;  3RD8 A;  2J91 A;  3UNV A;  5H8W A;  5EYT A;  3R6V A;  3KDZ A;  1VDK A;  4BAB A;  2VD6 A;  1B8F A;  1YFE A;  1TJU A;  4HGV A;  2FEN A;  2PTR A;  1GK2 A;  1Q5N A;  1XWO A; 
#chains in the Genus database with same CATH homology
 1K7W A;  3R6Q A;  2NYN A;  1U15 A;  2QGA B;  1W27 A;  2QVE A;  3NZ4 A;  2RJR A;  5F91 A;  3R6Y A;  4CQ5 A;  5EYV A;  1FUR A;  2NYF A;  3RRP A;  4BAA A;  1Y2M A;  3KDY A;  4ADL A;  3OCF A;  5D6B A;  2OHY A;  3NO9 A;  1T6P A;  4FLC A;  4NSL A;  4APA A;  4MX2 A;  2YII A;  4APB A;  3QBP A;  1FUO A;  4FFX A;  2FUS A;  2PTS A;  1K62 A;  1J3U A;  2O7F A;  5HW2 A;  1GKM A;  3GZH A;  4C5U A;  1DCN A;  2E9F A;  1C3C A;  1FUQ A;  4EEI A;  1TJ7 A;  1JSW A;  4V2Q A;  4C5R A;  1HY1 A;  3CZO A;  2O78 A;  4EFC A;  4ADM A;  3BHG A;  1U16 A;  4C6G A;  1I0A A;  2PFM A;  3C8T A;  5F92 A;  3TV2 A;  2PTQ A;  4V2R A;  2RJS A;  2O6Y A;  3OCE A;  4C5S A;  2O7D A;  2O7E A;  1EB4 A;  1GKJ A;  1KQ7 A;  1TJV A;  1RE5 A;  2X75 A;  1C3U A;  3GTD A;  1DOF A;  1T6J A;  2O7B A;  2HVG A;  1GK3 A;  3E04 A;  1FUP A;  1TJW A;  1AUW A;  1YFM A;  4NLE A;  1YIS A;  1HY0 A;  3RD8 A;  2J91 A;  3UNV A;  5EYT A;  3R6V A;  3KDZ A;  1VDK A;  4BAB A;  2VD6 A;  1B8F A;  1YFE A;  1TJU A;  4HGV A;  2PTR A;  1GK2 A;  1Q5N A;  1XWO A; 
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