1EF0A

Crystal structure of pi-scei miniprecursor
Total Genus 117
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
117
sequence length
457
structure length
425
Chain Sequence
EGAFAKGTNVLMADGSIECIENIEVGNKVMGKDGRPREVIKLPRGRETMYSVVQKSQHRAHKSDSSREVPELLKFTCNATHELVVRTPRSVRVITFEMGQKKAPDGRIVELVKEVSKSYPISEGPERANELVESYRKASNKAYFEWTIEARDLSLLGSHVRKATYQTYAPILYENDHFFDYMQKSKTIEGPKVLAYLLGLWIGDGLSDRATFSVDSRDTSLMERVTEYAEKLNLCAEYKDRKEPQVAKTVNLYSENPLWDAIVGLGFLKDGVKNIPSFLSTDNIGTRETFLAGLIDSDGYVTDEHGIKATIKTIHTSVRDGLVSLARSLGLVVSVNAEPAKVDGTKHKISYAIYMSGGDVLLNVLSKCAGSKKFRPAPAAAFARECRGFYFELQELKEDDYYGITLSDDSDHQFLLANQVVVHAC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PI-SCEI ENDONUCLEASE
publication title Structural insights into the protein splicing mechanism of PI-SceI.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 117
structure length 425
sequence length 457
chains with identical sequence B
ec nomenclature ec 7.1.2.2: H(+)-transporting two-sector ATPase.
pdb deposition date 2000-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05203 Hom_end_hint Hom_end-associated Hint
A PF05204 Hom_end Homing endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.16.10 Mainly Beta Beta Complex Endonuclease - Pi-scei; Chain A, domain 1 Hedgehog/Intein (Hint) domain 1ef0A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1ef0A02
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1ef0A03
5E5OA 4E2TA 1MI8A 5K08A 1DFAA 1LWTA 1T9IA 5A72A 1VDEA 3NZMA 5A0MB 3C0WA 5A77A 1AF5A 5A0MA 1M5XA 4UNBA 2VBLB 1DQ3A 2VS7A 1G9YA 4Z1XA 4AABA 3E54A 5E5SA 2LCJA 3HYIA 4AQXA 3HYJA 5AKFA 4E2UA 5A74A 1U0CA 4D6OA 1GPPA 5A0WA 4UN9A 4UN8G 1T9JA 5AKNA 5E63A 3EH8A 4LQ0A 4UNCA 1N3EA 2VS8A 5AK9A 3MXBB 2IMZA 3C0XA 1JVAA 3R7PA 4UN7G 2VBJB 4AQUA 3OOLA 2VBJA 2XE0B 2VBLA 1R7MA 1ZDEA 2I3PA 2XE0A 1N3FA 4YITA 5AKMA 2CW7A 1AM2A 4EFJA 1UM2A 3IFJA 4YHXA 3QQYA 4UNAA 4AAEA 3MXAA 2JMZA 1ZD7A 4AAFA 1P8KZ 4YISA 2IN8A 4OZ6A 1BP7A 3OORA 3MISA 4D6NA 3MXBA 4UN8A 4UT0A 1B24A 5A78A 3MIPA 1EF0A 4O1SA 5I0AA 2QOJZ 3IGDA 5E67A 4KL6A 4UN7A 2I3QA 1MOWA 2FLDA 2KEQA 2L8LA 1LWSA 1U0DA 2DCHX 2IN0A 4Z1ZA 3KO2A 4O1RA 4KL5A 4LOXA 2IN9A 3UVFA 1AT0A 4AADA 2EX5A 2VBNB 2LQMA 4Z20A 2VBNA 3FD2A 1G9ZA 2LWYA 3MX9A 4GIGA 2JNQA 4AAGA 2O7MA 4UN9G 2VBOB 2CW8A 2VBOA 2AB5A
chains in the Genus database with same CATH superfamily
5E5OA 4E2TA 1MI8A 5K08A 1DFAA 1LWTA 1T9IA 5A72A 1VDEA 4KZSA 3NZMA 5A0MB 3C0WA 5A77A 1AF5A 5A0MA 1M5XA 4UNBA 2VBLB 1DQ3A 4LX3A 2VS7A 1G9YA 4Z1XA 4AABA 3E54A 5E5SA 2LCJA 3HYIA 4AQXA 3HYJA 5AKFA 4E2UA 2F4LA 5A74A 1U0CA 4D6OA 1GPPA 5A0WA 4UN9A 4UN8G 1T9JA 5AKNA 5E63A 3EH8A 4LQ0A 4UNCA 1N3EA 2VS8A 5AK9A 3MXBB 2IMZA 4QFQA 3C0XA 1JVAA 3R7PA 4UN7G 2VBJB 4AQUA 3OOLA 2VBJA 2XE0B 2VBLA 1R7MA 1ZDEA 2I3PA 2XE0A 1N3FA 4YITA 5AKMA 2CW7A 1AM2A 4EFJA 1UM2A 3IFJA 4YHXA 3QQYA 4UNAA 4AAEA 3MXAA 2JMZA 1ZD7A 4AAFA 1P8KZ 4YISA 2IN8A 4OZ6A 1BP7A 3OORA 3MISA 4D6NA 3MXBA 4UN8A 4UT0A 1B24A 5A78A 3MIPA 1EF0A 4O1SA 5I0AA 2QOJZ 3IGDA 5E67A 4KL6A 4UN7A 2I3QA 1MOWA 2FLDA 2KEQA 2L8LA 1LWSA 1U0DA 2DCHX 2IN0A 4Z1ZA 3KO2A 4O1RA 4KL5A 4LOXA 2IN9A 3UVFA 1AT0A 4AADA 2EX5A 2VBNB 2LQMA 4Z20A 2VBNA 3FD2A 1G9ZA 2LWYA 3MX9A 4GIGA 2JNQA 4AAGA 2O7MA 4UN9G 2VBOB 2CW8A 2VBOA 2AB5A
chains in the Genus database with same CATH topology
5E5OA 4E2TA 1MI8A 5K08A 1DFAA 1LWTA 1T9IA 5A72A 1VDEA 3NZMA 5A0MB 3C0WA 5A77A 1AF5A 5A0MA 1M5XA 4UNBA 2VBLB 1DQ3A 2VS7A 1G9YA 4Z1XA 4AABA 3E54A 5E5SA 2LCJA 3HYIA 4AQXA 3HYJA 5AKFA 4E2UA 5A74A 1U0CA 4D6OA 1GPPA 5A0WA 4UN9A 4UN8G 1T9JA 5AKNA 5E63A 3EH8A 4LQ0A 4UNCA 1N3EA 2VS8A 5AK9A 3MXBB 2IMZA 3C0XA 1JVAA 3R7PA 4UN7G 2VBJB 4AQUA 3OOLA 2VBJA 2XE0B 2VBLA 1R7MA 1ZDEA 2I3PA 2XE0A 1N3FA 4YITA 5AKMA 2CW7A 1AM2A 4EFJA 1UM2A 3IFJA 4YHXA 3QQYA 4UNAA 4AAEA 3MXAA 2JMZA 1ZD7A 4AAFA 1P8KZ 4YISA 2IN8A 4OZ6A 1BP7A 3OORA 3MISA 4D6NA 3MXBA 4UN8A 4UT0A 1B24A 5A78A 3MIPA 1EF0A 4O1SA 5I0AA 2QOJZ 3IGDA 5E67A 4KL6A 4UN7A 2I3QA 1MOWA 2FLDA 2KEQA 2L8LA 1LWSA 1U0DA 2DCHX 2IN0A 4Z1ZA 3KO2A 4O1RA 4KL5A 4LOXA 2IN9A 3UVFA 1AT0A 4AADA 2EX5A 2VBNB 2LQMA 4Z20A 2VBNA 3FD2A 1G9ZA 2LWYA 3MX9A 4GIGA 2JNQA 4AAGA 2O7MA 4UN9G 2VBOB 2CW8A 2VBOA 2AB5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E5O A;  4E2T A;  1MI8 A;  5K08 A;  1DFA A;  1LWT A;  1T9I A;  5A72 A;  1VDE A;  3NZM A;  5A0M B;  3C0W A;  5A77 A;  1AF5 A;  5A0M A;  1M5X A;  4UNB A;  2VBL B;  1DQ3 A;  2VS7 A;  1G9Y A;  4Z1X A;  4AAB A;  3E54 A;  5E5S A;  2LCJ A;  3HYI A;  4AQX A;  3HYJ A;  5AKF A;  4E2U A;  5A74 A;  1U0C A;  4D6O A;  1GPP A;  5A0W A;  4UN9 A;  4UN8 G;  1T9J A;  5AKN A;  5E63 A;  3EH8 A;  4LQ0 A;  4UNC A;  1N3E A;  2VS8 A;  5AK9 A;  3MXB B;  2IMZ A;  3C0X A;  1JVA A;  3R7P A;  4UN7 G;  2VBJ B;  4AQU A;  3OOL A;  2VBJ A;  2XE0 B;  2VBL A;  1R7M A;  1ZDE A;  2I3P A;  2XE0 A;  1N3F A;  4YIT A;  5AKM A;  2CW7 A;  1AM2 A;  4EFJ A;  1UM2 A;  3IFJ A;  4YHX A;  3QQY A;  4UNA A;  4AAE A;  3MXA A;  2JMZ A;  1ZD7 A;  4AAF A;  1P8K Z;  4YIS A;  2IN8 A;  4OZ6 A;  1BP7 A;  3OOR A;  3MIS A;  4D6N A;  3MXB A;  4UN8 A;  4UT0 A;  1B24 A;  5A78 A;  3MIP A;  1EF0 A;  4O1S A;  5I0A A;  2QOJ Z;  3IGD A;  5E67 A;  4KL6 A;  4UN7 A;  2I3Q A;  1MOW A;  2FLD A;  2KEQ A;  2L8L A;  1LWS A;  1U0D A;  2DCH X;  2IN0 A;  4Z1Z A;  3KO2 A;  4O1R A;  4KL5 A;  4LOX A;  2IN9 A;  3UVF A;  1AT0 A;  4AAD A;  2EX5 A;  2VBN B;  2LQM A;  4Z20 A;  2VBN A;  3FD2 A;  1G9Z A;  2LWY A;  3MX9 A;  4GIG A;  2JNQ A;  4AAG A;  2O7M A;  4UN9 G;  2VBO B;  2CW8 A;  2VBO A;  2AB5 A; 
#chains in the Genus database with same CATH topology
 5E5O A;  4E2T A;  1MI8 A;  5K08 A;  1DFA A;  1LWT A;  1T9I A;  5A72 A;  1VDE A;  4KZS A;  3NZM A;  5A0M B;  3C0W A;  5A77 A;  1AF5 A;  5A0M A;  1M5X A;  4UNB A;  2VBL B;  1DQ3 A;  4LX3 A;  2VS7 A;  1G9Y A;  4Z1X A;  4AAB A;  3E54 A;  5E5S A;  2LCJ A;  3HYI A;  4AQX A;  3HYJ A;  5AKF A;  4E2U A;  2F4L A;  5A74 A;  1U0C A;  4D6O A;  1GPP A;  5A0W A;  4UN9 A;  4UN8 G;  1T9J A;  5AKN A;  5E63 A;  3EH8 A;  4LQ0 A;  4UNC A;  1N3E A;  2VS8 A;  5AK9 A;  3MXB B;  2IMZ A;  4QFQ A;  3C0X A;  1JVA A;  3R7P A;  4UN7 G;  2VBJ B;  4AQU A;  3OOL A;  2VBJ A;  2XE0 B;  2VBL A;  1R7M A;  1ZDE A;  2I3P A;  2XE0 A;  1N3F A;  4YIT A;  5AKM A;  2CW7 A;  1AM2 A;  4EFJ A;  1UM2 A;  3IFJ A;  4YHX A;  3QQY A;  4UNA A;  4AAE A;  3MXA A;  2JMZ A;  1ZD7 A;  4AAF A;  1P8K Z;  4YIS A;  2IN8 A;  4OZ6 A;  1BP7 A;  3OOR A;  3MIS A;  4D6N A;  3MXB A;  4UN8 A;  4UT0 A;  1B24 A;  5A78 A;  3MIP A;  1EF0 A;  4O1S A;  5I0A A;  2QOJ Z;  3IGD A;  5E67 A;  4KL6 A;  4UN7 A;  2I3Q A;  1MOW A;  2FLD A;  2KEQ A;  2L8L A;  1LWS A;  1U0D A;  2DCH X;  2IN0 A;  4Z1Z A;  3KO2 A;  4O1R A;  4KL5 A;  4LOX A;  2IN9 A;  3UVF A;  1AT0 A;  4AAD A;  2EX5 A;  2VBN B;  2LQM A;  4Z20 A;  2VBN A;  3FD2 A;  1G9Z A;  2LWY A;  3MX9 A;  4GIG A;  2JNQ A;  4AAG A;  2O7M A;  4UN9 G;  2VBO B;  2CW8 A;  2VBO A;  2AB5 A; 
#chains in the Genus database with same CATH homology
 5E5O A;  4E2T A;  1MI8 A;  5K08 A;  1DFA A;  1LWT A;  1T9I A;  5A72 A;  1VDE A;  3NZM A;  5A0M B;  3C0W A;  5A77 A;  1AF5 A;  5A0M A;  1M5X A;  4UNB A;  2VBL B;  1DQ3 A;  2VS7 A;  1G9Y A;  4Z1X A;  4AAB A;  3E54 A;  5E5S A;  2LCJ A;  3HYI A;  4AQX A;  3HYJ A;  5AKF A;  4E2U A;  5A74 A;  1U0C A;  4D6O A;  1GPP A;  5A0W A;  4UN9 A;  4UN8 G;  1T9J A;  5AKN A;  5E63 A;  3EH8 A;  4LQ0 A;  4UNC A;  1N3E A;  2VS8 A;  5AK9 A;  3MXB B;  2IMZ A;  3C0X A;  1JVA A;  3R7P A;  4UN7 G;  2VBJ B;  4AQU A;  3OOL A;  2VBJ A;  2XE0 B;  2VBL A;  1R7M A;  1ZDE A;  2I3P A;  2XE0 A;  1N3F A;  4YIT A;  5AKM A;  2CW7 A;  1AM2 A;  4EFJ A;  1UM2 A;  3IFJ A;  4YHX A;  3QQY A;  4UNA A;  4AAE A;  3MXA A;  2JMZ A;  1ZD7 A;  4AAF A;  1P8K Z;  4YIS A;  2IN8 A;  4OZ6 A;  1BP7 A;  3OOR A;  3MIS A;  4D6N A;  3MXB A;  4UN8 A;  4UT0 A;  1B24 A;  5A78 A;  3MIP A;  1EF0 A;  4O1S A;  5I0A A;  2QOJ Z;  3IGD A;  5E67 A;  4KL6 A;  4UN7 A;  2I3Q A;  1MOW A;  2FLD A;  2KEQ A;  2L8L A;  1LWS A;  1U0D A;  2DCH X;  2IN0 A;  4Z1Z A;  3KO2 A;  4O1R A;  4KL5 A;  4LOX A;  2IN9 A;  3UVF A;  1AT0 A;  4AAD A;  2EX5 A;  2VBN B;  2LQM A;  4Z20 A;  2VBN A;  3FD2 A;  1G9Z A;  2LWY A;  3MX9 A;  4GIG A;  2JNQ A;  4AAG A;  2O7M A;  4UN9 G;  2VBO B;  2CW8 A;  2VBO A;  2AB5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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