1EHBA

Crystal structure of recombinant trypsin-solubilized fragment of cytochrome b5
Total Genus 24
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
82
structure length
82
Chain Sequence
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Electron transport
molecule keywords PROTEIN (CYTOCHROME B5)
publication title Crystal structure of recombinant trypsin-solubilized fragment of cytochrome b(5) and the structural comparison with Val61His mutant.
pubmed doi rcsb
source organism Bos taurus
total genus 24
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2000-02-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1ehbA00
1LTDA 1EHBA 1DO9A 3LF5A 3OZZB 1SOXA 1KBIA 1J0QA 1MNYA 1EUEA 1M20A 1I87A 1CYOA 3KS0A 1LR6A 1B5BA 1BLVA 1X3XA 1AXXA 1ICCA 3X32A 1IETA 1I8CA 1LJ0A 1IB7A 1F04A 1B5AA 1NX7A 1I5UA 1T0GA 2IBJA 1AW3A 1U9UA 1B5MA 1AQAA 1BFXA 2OZ0A 4HINA 4X8YA 3X35A 1JEXA 2I96A 3MUSA 3NERA 1HKOA 1M2MA 1M59A 2M33A 1F03A 1SH4A 1J03A 1IEUA 2I89A 2KEOA 1ES1A 1FCBA 1U9MA 1CXYA 1M2IA 2AXXA 3X34A 4B8NA 3X33A 1LQXA 1MJ4A 1LCOA 4HILA 1AWPA 1LDCA
chains in the Genus database with same CATH superfamily
1LTDA 1EHBA 1DO9A 3LF5A 3OZZB 1SOXA 1KBIA 1J0QA 1MNYA 1EUEA 1M20A 1I87A 1CYOA 3KS0A 1LR6A 1B5BA 1BLVA 1X3XA 1AXXA 1ICCA 3X32A 1IETA 1I8CA 1LJ0A 1IB7A 1F04A 1B5AA 1NX7A 1I5UA 1T0GA 2IBJA 1AW3A 1U9UA 1B5MA 1AQAA 1BFXA 2OZ0A 4HINA 4X8YA 3X35A 1JEXA 2I96A 3MUSA 3NERA 1HKOA 1M2MA 1M59A 2M33A 1F03A 1SH4A 1J03A 1IEUA 2I89A 2KEOA 1ES1A 1FCBA 1U9MA 1CXYA 1M2IA 2AXXA 3X34A 4B8NA 3X33A 1LQXA 1MJ4A 1LCOA 4HILA 1AWPA 1LDCA
chains in the Genus database with same CATH topology
1LTDA 1EHBA 1DO9A 3LF5A 3OZZB 1SOXA 1KBIA 1J0QA 1MNYA 1EUEA 1M20A 1I87A 1CYOA 3KS0A 1LR6A 1B5BA 1BLVA 1X3XA 1AXXA 1ICCA 3X32A 1IETA 1I8CA 1LJ0A 1IB7A 1F04A 1B5AA 1NX7A 1I5UA 1T0GA 2IBJA 1AW3A 1U9UA 1B5MA 1AQAA 1BFXA 2OZ0A 4HINA 4X8YA 3X35A 1JEXA 2I96A 3MUSA 3NERA 1HKOA 1M2MA 1M59A 2M33A 1F03A 1SH4A 1J03A 1IEUA 2I89A 2KEOA 1ES1A 1FCBA 1U9MA 1CXYA 1M2IA 2AXXA 3X34A 4B8NA 3X33A 1LQXA 1MJ4A 1LCOA 4HILA 1AWPA 1LDCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LTD A;  1EHB A;  1DO9 A;  3LF5 A;  3OZZ B;  1SOX A;  1KBI A;  1J0Q A;  1MNY A;  1EUE A;  1M20 A;  1I87 A;  1CYO A;  3KS0 A;  1LR6 A;  1B5B A;  1BLV A;  1X3X A;  1AXX A;  1ICC A;  3X32 A;  1IET A;  1I8C A;  1LJ0 A;  1IB7 A;  1F04 A;  1B5A A;  1NX7 A;  1I5U A;  1T0G A;  2IBJ A;  1AW3 A;  1U9U A;  1B5M A;  1AQA A;  1BFX A;  2OZ0 A;  4HIN A;  4X8Y A;  3X35 A;  1JEX A;  2I96 A;  3MUS A;  3NER A;  1HKO A;  1M2M A;  1M59 A;  2M33 A;  1F03 A;  1SH4 A;  1J03 A;  1IEU A;  2I89 A;  2KEO A;  1ES1 A;  1FCB A;  1U9M A;  1CXY A;  1M2I A;  2AXX A;  3X34 A;  4B8N A;  3X33 A;  1LQX A;  1MJ4 A;  1LCO A;  4HIL A;  1AWP A;  1LDC A; 
#chains in the Genus database with same CATH topology
 1LTD A;  1EHB A;  1DO9 A;  3LF5 A;  3OZZ B;  1SOX A;  1KBI A;  1J0Q A;  1MNY A;  1EUE A;  1M20 A;  1I87 A;  1CYO A;  3KS0 A;  1LR6 A;  1B5B A;  1BLV A;  1X3X A;  1AXX A;  1ICC A;  3X32 A;  1IET A;  1I8C A;  1LJ0 A;  1IB7 A;  1F04 A;  1B5A A;  1NX7 A;  1I5U A;  1T0G A;  2IBJ A;  1AW3 A;  1U9U A;  1B5M A;  1AQA A;  1BFX A;  2OZ0 A;  4HIN A;  4X8Y A;  3X35 A;  1JEX A;  2I96 A;  3MUS A;  3NER A;  1HKO A;  1M2M A;  1M59 A;  2M33 A;  1F03 A;  1SH4 A;  1J03 A;  1IEU A;  2I89 A;  2KEO A;  1ES1 A;  1FCB A;  1U9M A;  1CXY A;  1M2I A;  2AXX A;  3X34 A;  4B8N A;  3X33 A;  1LQX A;  1MJ4 A;  1LCO A;  4HIL A;  1AWP A;  1LDC A; 
#chains in the Genus database with same CATH homology
 1LTD A;  1EHB A;  1DO9 A;  3LF5 A;  3OZZ B;  1SOX A;  1KBI A;  1J0Q A;  1MNY A;  1EUE A;  1M20 A;  1I87 A;  1CYO A;  3KS0 A;  1LR6 A;  1B5B A;  1BLV A;  1X3X A;  1AXX A;  1ICC A;  3X32 A;  1IET A;  1I8C A;  1LJ0 A;  1IB7 A;  1F04 A;  1B5A A;  1NX7 A;  1I5U A;  1T0G A;  2IBJ A;  1AW3 A;  1U9U A;  1B5M A;  1AQA A;  1BFX A;  2OZ0 A;  4HIN A;  4X8Y A;  3X35 A;  1JEX A;  2I96 A;  3MUS A;  3NER A;  1HKO A;  1M2M A;  1M59 A;  2M33 A;  1F03 A;  1SH4 A;  1J03 A;  1IEU A;  2I89 A;  2KEO A;  1ES1 A;  1FCB A;  1U9M A;  1CXY A;  1M2I A;  2AXX A;  3X34 A;  4B8N A;  3X33 A;  1LQX A;  1MJ4 A;  1LCO A;  4HIL A;  1AWP A;  1LDC A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...