1EIKA

Solution structure of rna polymerase subunit rpb5 from methanobacterium thermoautotrophicum
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
77
structure length
77
Chain Sequence
MKREILKHQLVPEHVILNESEAKRVLKELDAHPEQLPKIKTTDPVAKAIGAKRGDIVKIIRKSPTAEEFVTYRLVQD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords RNA POLYMERASE SUBUNIT RPB5
publication title Solution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum.
pubmed doi rcsb
source organism Methanothermobacter thermautotrophicus
total genus 10
structure length 77
sequence length 77
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2000-02-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01191 RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.20 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit RPB5-like RNA polymerase subunit 1eikA00
1DZFA 3HKZH 3S1NE 4X6AE 3I4ME 3GTOE 5C3EE 2JA8E 3S15E 4C3HE 3PO2E 4QIWH 4Y52E 3PO3E 3HOZE 1TWHE 2NVXE 2Y0SH 3S2HE 2E2JE 4A3LE 4A3IE 1EIKA 2NVTE 2R7ZE 3GTJE 2JA5E 3GTLE 3S1RE 5M3ME 3H3VF 4BXXE 1WCME 5C4XE 4A3KE 4C3JE 1I3QE 3HOVE 1R9TE 3HOWE 1I50E 2NVYE 1Y1WE 3FKIE 5M5WE 3S17E 1K83E 4A3BE 4BY7E 3GTQE 5IP7E 3GTKE 3M3YE 3S16E 2YU9E 2R92E 1Y1VE 5C4JE 5C44E 3S1QE 2E2IE 4A3JE 5IYBE 1TWFE 5IP9E 2WAQH 3HOYE 4BY1E 3S1ME 1TWGE 2NVQE 2VUME 3K7AE 2JA6E 2B63E 1I6HE 5FLME 4A93E 3S14E 3M4OE 5M5YE 3GTME 3CQZE 3H0GE 3HOUE 4AYBH 4C3IE 4C2ME 1SFOE 3I4NE 1TWAE 3RZDE 5IYCE 4A3CE 4A3ME 3GTGE 4A3FE 3HOXE 2JA7E 2R93E 2WB1H 3S2DE 4A3GE 3GTPE 3RZOE 5IYDE 5FJ8E 2E2HE 4A3DE 5M5XE 5M3FE 1TWCE 4BBSE 4Y7NE 2PMZH 4BBRE 4A3EE
chains in the Genus database with same CATH superfamily
1DZFA 3HKZH 2JA5F 3S1NE 4XLNE 3S1RF 4X6AE 2WAQK 3I4ME 4BXXF 2O5IE 1WCMF 5C4XF 3GTOE 2Y0SI 5C3EE 4A3KF 4YG2E 2JA8E 3S15E 4KMUE 4C3JF 1I3QF 4C3HE 3HOVF 3PO2E 4QIWH 4Y52E 4G7ZE 3PO3E 3HOZE 1R9TF 3HOWF 1I50F 2NVYF 1TWHE 2NVXE 1Y1WF 3FKIF 4LLGE 1YNNK 1K83F 2Y0SH 4XSXE 4BY7F 5M5WF 4A3IE 2BE5E 5IP7F 4G7HE 2E2JE 2NVTE 3GTKF 3GTQF 3M3YF 3S16F 2YU9F 2R7ZE 2R92F 3GTJE 1Y1VF 5C4JF 5C44F 2PMZK 5E17E 2JA5E 3GTLE 1TWHF 2KRXA 3S1RE 5M3ME 3WODE 3H3VF 5D4CE 3S1QF 4BXXE 3S2HE 2E2IF 3DXJE 1WCME 4A3JF 5C4XE 4A3KE 5IYBF 1TWFF 5IP9F 3GTLF 4C3JE 3HOYF 1I3QE 5M3MF 5E18E 3HOVE 4BY1F 3S1MF 1I6VE 1TWGF 2NVQF 4MEYE 4YFXE 2VUMF 1R9TE 3HOWE 3K7AF 1I50E 4LK1E 1SMYE 2NVYE 2B63F 1I6HF 2JA6F 1Y1WE 3FKIE 5M5WE 5FLMF 1K83E 3S17E 4A3BE 3GTQE 4A93F 3S14F 4BY7E 5IP7E 3M4OF 3GTKE 2A6EE 3M3YE 5M5YF 3GTMF 2YU9E 3S16E 4A3BF 2R92E 1Y1VE 3CQZF 3H0GF 5C44E 5C4JE 3HOUF 4C3IF 4C2MF 1SFOF 4A3LE 3S1QE 5BYHE 2E2IE 4A3JE 4OIPE 5D4DE 1TWAF 1TWFE 4LK0E 2WAQH 5TMFE 4YFKE 5IP9E 5IYBE 3RZDF 4OIRE 4BY1E 3HOYE 3S17F 3S1ME 1TWGE 2NVQE 5IYCF 4A3CF 2VUME 5IPLE 4A3MF 3K7AE 2JA6E 2B63E 3GTGF 1I6HE 4YFNE 5FLME 3HKZK 4A3FF 2JA7F 4A93E 3S14E 3S2DF 5D4EE 3M4OE 4Q5SE 2R93F 4ZH4E 5M5YE 4OIOE 3GTME 4A3GF 1EIKA 2PPBE 3CQZE 3H0GE 4Q4ZE 4KN7E 3HOUE 4MQ9E 4AYBH 4C3IE 3GTPF 4C2ME 1SFOE 4JK1E 4G7OE 3RZOF 4QIWK 5IYDF 3I4NE 5FJ8F 1TWAE 3RZDE 2E2HF 4GZYE 4A3DF 5M5XF 2O5JE 4LJZE 5M3FF 1TWCF 2A68E 4KN4E 5IYCE 4BBSF 4Y7NF 4A3ME 4A3CE 1QKLA 3I4NF 3GTGE 1HQME 4BBRF 3HOXE 4A3FE 2JA7E 2A6HE 2WB1H 3S2DE 4A3EF 2R93E 4A3GE 3GTPE 3S1NF 3HOXF 4X6AF 2A69E 3H3VG 3I4MF 3RZOE 1IW7E 5IYDE 4MEXE 5FJ8E 4XSZE 2E2HE 4OIQE 3GTOF 4A3DE 5M5XE 5C3EF 2JA8F 3S15F 4AYBK 5M3FE 1TWCE 4C3HF 3PO2F 4BBSE 1YNJK 4Y52F 4XLPE 4Y7NE 1ZYRE 2PMZH 3HOZF 3PO3F 2WB1I 4BBRE 2NVXF 3EQLE 4OINE 5TMCE 3S2HF 4A3EE 2E2JF 4A3LF 4A3IF 2NVTF 2CW0E 2R7ZF 3GTJF
chains in the Genus database with same CATH topology
1DZFA 3HKZH 3S1NE 4X6AE 3I4ME 3GTOE 5C3EE 2JA8E 3S15E 4C3HE 3PO2E 4QIWH 4Y52E 3PO3E 3HOZE 1TWHE 2NVXE 2Y0SH 3S2HE 2E2JE 4A3LE 4A3IE 1EIKA 2NVTE 2R7ZE 3GTJE 2JA5E 3GTLE 3S1RE 5M3ME 3H3VF 4BXXE 1WCME 5C4XE 4A3KE 4C3JE 1I3QE 3HOVE 1R9TE 3HOWE 1I50E 2NVYE 1Y1WE 3FKIE 5M5WE 3S17E 1K83E 4A3BE 4BY7E 3GTQE 5IP7E 3GTKE 3M3YE 3S16E 2YU9E 2R92E 1Y1VE 5C4JE 5C44E 3S1QE 2E2IE 4A3JE 5IYBE 1TWFE 5IP9E 2WAQH 3HOYE 4BY1E 3S1ME 1TWGE 2NVQE 2VUME 3K7AE 2JA6E 2B63E 1I6HE 5FLME 4A93E 3S14E 3M4OE 5M5YE 3GTME 3CQZE 3H0GE 3HOUE 4AYBH 4C3IE 4C2ME 1SFOE 3I4NE 1TWAE 3RZDE 5IYCE 4A3CE 4A3ME 3GTGE 4A3FE 3HOXE 2JA7E 2R93E 2WB1H 3S2DE 4A3GE 3GTPE 3RZOE 5IYDE 5FJ8E 2E2HE 4A3DE 5M5XE 5M3FE 1TWCE 4BBSE 4Y7NE 2PMZH 4BBRE 4A3EE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DZF A;  3HKZ H;  3S1N E;  4X6A E;  3I4M E;  3GTO E;  5C3E E;  2JA8 E;  3S15 E;  4C3H E;  3PO2 E;  4QIW H;  4Y52 E;  3PO3 E;  3HOZ E;  1TWH E;  2NVX E;  2Y0S H;  3S2H E;  2E2J E;  4A3L E;  4A3I E;  1EIK A;  2NVT E;  2R7Z E;  3GTJ E;  2JA5 E;  3GTL E;  3S1R E;  5M3M E;  3H3V F;  4BXX E;  1WCM E;  5C4X E;  4A3K E;  4C3J E;  1I3Q E;  3HOV E;  1R9T E;  3HOW E;  1I50 E;  2NVY E;  1Y1W E;  3FKI E;  5M5W E;  3S17 E;  1K83 E;  4A3B E;  4BY7 E;  3GTQ E;  5IP7 E;  3GTK E;  3M3Y E;  3S16 E;  2YU9 E;  2R92 E;  1Y1V E;  5C4J E;  5C44 E;  3S1Q E;  2E2I E;  4A3J E;  5IYB E;  1TWF E;  5IP9 E;  2WAQ H;  3HOY E;  4BY1 E;  3S1M E;  1TWG E;  2NVQ E;  2VUM E;  3K7A E;  2JA6 E;  2B63 E;  1I6H E;  5FLM E;  4A93 E;  3S14 E;  3M4O E;  5M5Y E;  3GTM E;  3CQZ E;  3H0G E;  3HOU E;  4AYB H;  4C3I E;  4C2M E;  1SFO E;  3I4N E;  1TWA E;  3RZD E;  5IYC E;  4A3C E;  4A3M E;  3GTG E;  4A3F E;  3HOX E;  2JA7 E;  2R93 E;  2WB1 H;  3S2D E;  4A3G E;  3GTP E;  3RZO E;  5IYD E;  5FJ8 E;  2E2H E;  4A3D E;  5M5X E;  5M3F E;  1TWC E;  4BBS E;  4Y7N E;  2PMZ H;  4BBR E;  4A3E E; 
#chains in the Genus database with same CATH topology
 1DZF A;  3HKZ H;  2JA5 F;  3S1N E;  4XLN E;  3S1R F;  4X6A E;  2WAQ K;  3I4M E;  4BXX F;  2O5I E;  1WCM F;  5C4X F;  3GTO E;  2Y0S I;  5C3E E;  4A3K F;  4YG2 E;  2JA8 E;  3S15 E;  4KMU E;  4C3J F;  1I3Q F;  4C3H E;  3HOV F;  3PO2 E;  4QIW H;  4Y52 E;  4G7Z E;  3PO3 E;  3HOZ E;  1R9T F;  3HOW F;  1I50 F;  2NVY F;  1TWH E;  2NVX E;  1Y1W F;  3FKI F;  4LLG E;  1YNN K;  1K83 F;  2Y0S H;  4XSX E;  4BY7 F;  5M5W F;  4A3I E;  2BE5 E;  5IP7 F;  4G7H E;  2E2J E;  2NVT E;  3GTK F;  3GTQ F;  3M3Y F;  3S16 F;  2YU9 F;  2R7Z E;  2R92 F;  3GTJ E;  1Y1V F;  5C4J F;  5C44 F;  2PMZ K;  5E17 E;  2JA5 E;  3GTL E;  1TWH F;  2KRX A;  3S1R E;  5M3M E;  3WOD E;  3H3V F;  5D4C E;  3S1Q F;  4BXX E;  3S2H E;  2E2I F;  3DXJ E;  1WCM E;  4A3J F;  5C4X E;  4A3K E;  5IYB F;  1TWF F;  5IP9 F;  3GTL F;  4C3J E;  3HOY F;  1I3Q E;  5M3M F;  5E18 E;  3HOV E;  4BY1 F;  3S1M F;  1I6V E;  1TWG F;  2NVQ F;  4MEY E;  4YFX E;  2VUM F;  1R9T E;  3HOW E;  3K7A F;  1I50 E;  4LK1 E;  1SMY E;  2NVY E;  2B63 F;  1I6H F;  2JA6 F;  1Y1W E;  3FKI E;  5M5W E;  5FLM F;  1K83 E;  3S17 E;  4A3B E;  3GTQ E;  4A93 F;  3S14 F;  4BY7 E;  5IP7 E;  3M4O F;  3GTK E;  2A6E E;  3M3Y E;  5M5Y F;  3GTM F;  2YU9 E;  3S16 E;  4A3B F;  2R92 E;  1Y1V E;  3CQZ F;  3H0G F;  5C44 E;  5C4J E;  3HOU F;  4C3I F;  4C2M F;  1SFO F;  4A3L E;  3S1Q E;  5BYH E;  2E2I E;  4A3J E;  4OIP E;  5D4D E;  1TWA F;  1TWF E;  4LK0 E;  2WAQ H;  5TMF E;  4YFK E;  5IP9 E;  5IYB E;  3RZD F;  4OIR E;  4BY1 E;  3HOY E;  3S17 F;  3S1M E;  1TWG E;  2NVQ E;  5IYC F;  4A3C F;  2VUM E;  5IPL E;  4A3M F;  3K7A E;  2JA6 E;  2B63 E;  3GTG F;  1I6H E;  4YFN E;  5FLM E;  3HKZ K;  4A3F F;  2JA7 F;  4A93 E;  3S14 E;  3S2D F;  5D4E E;  3M4O E;  4Q5S E;  2R93 F;  4ZH4 E;  5M5Y E;  4OIO E;  3GTM E;  4A3G F;  1EIK A;  2PPB E;  3CQZ E;  3H0G E;  4Q4Z E;  4KN7 E;  3HOU E;  4MQ9 E;  4AYB H;  4C3I E;  3GTP F;  4C2M E;  1SFO E;  4JK1 E;  4G7O E;  3RZO F;  4QIW K;  5IYD F;  3I4N E;  5FJ8 F;  1TWA E;  3RZD E;  2E2H F;  4GZY E;  4A3D F;  5M5X F;  2O5J E;  4LJZ E;  5M3F F;  1TWC F;  2A68 E;  4KN4 E;  5IYC E;  4BBS F;  4Y7N F;  4A3M E;  4A3C E;  1QKL A;  3I4N F;  3GTG E;  1HQM E;  4BBR F;  3HOX E;  4A3F E;  2JA7 E;  2A6H E;  2WB1 H;  3S2D E;  4A3E F;  2R93 E;  4A3G E;  3GTP E;  3S1N F;  3HOX F;  4X6A F;  2A69 E;  3H3V G;  3I4M F;  3RZO E;  1IW7 E;  5IYD E;  4MEX E;  5FJ8 E;  4XSZ E;  2E2H E;  4OIQ E;  3GTO F;  4A3D E;  5M5X E;  5C3E F;  2JA8 F;  3S15 F;  4AYB K;  5M3F E;  1TWC E;  4C3H F;  3PO2 F;  4BBS E;  1YNJ K;  4Y52 F;  4XLP E;  4Y7N E;  1ZYR E;  2PMZ H;  3HOZ F;  3PO3 F;  2WB1 I;  4BBR E;  2NVX F;  3EQL E;  4OIN E;  5TMC E;  3S2H F;  4A3E E;  2E2J F;  4A3L F;  4A3I F;  2NVT F;  2CW0 E;  2R7Z F;  3GTJ F; 
#chains in the Genus database with same CATH homology
 1DZF A;  3HKZ H;  3S1N E;  4X6A E;  3I4M E;  3GTO E;  5C3E E;  2JA8 E;  3S15 E;  4C3H E;  3PO2 E;  4QIW H;  4Y52 E;  3PO3 E;  3HOZ E;  1TWH E;  2NVX E;  2Y0S H;  3S2H E;  2E2J E;  4A3L E;  4A3I E;  1EIK A;  2NVT E;  2R7Z E;  3GTJ E;  2JA5 E;  3GTL E;  3S1R E;  5M3M E;  3H3V F;  4BXX E;  1WCM E;  5C4X E;  4A3K E;  4C3J E;  1I3Q E;  3HOV E;  1R9T E;  3HOW E;  1I50 E;  2NVY E;  1Y1W E;  3FKI E;  5M5W E;  3S17 E;  1K83 E;  4A3B E;  4BY7 E;  3GTQ E;  5IP7 E;  3GTK E;  3M3Y E;  3S16 E;  2YU9 E;  2R92 E;  1Y1V E;  5C4J E;  5C44 E;  3S1Q E;  2E2I E;  4A3J E;  5IYB E;  1TWF E;  5IP9 E;  2WAQ H;  3HOY E;  4BY1 E;  3S1M E;  1TWG E;  2NVQ E;  2VUM E;  3K7A E;  2JA6 E;  2B63 E;  1I6H E;  5FLM E;  4A93 E;  3S14 E;  3M4O E;  5M5Y E;  3GTM E;  3CQZ E;  3H0G E;  3HOU E;  4AYB H;  4C3I E;  4C2M E;  1SFO E;  3I4N E;  1TWA E;  3RZD E;  5IYC E;  4A3C E;  4A3M E;  3GTG E;  4A3F E;  3HOX E;  2JA7 E;  2R93 E;  2WB1 H;  3S2D E;  4A3G E;  3GTP E;  3RZO E;  5IYD E;  5FJ8 E;  2E2H E;  4A3D E;  5M5X E;  5M3F E;  1TWC E;  4BBS E;  4Y7N E;  2PMZ H;  4BBR E;  4A3E E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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