1EJSA

Crystal structure of the h219n variant of klebsiella aerogenes urease
Total Genus 28
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
100
structure length
100
Chain Sequence
MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPII
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords UREASE ALPHA SUBUNIT
publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 28
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 1ejsA00
3QGAA 1EJVA 1UBPA 1EJXA 1FWGA 4EPDA 1FWJA 4FURA 2KAUA 1A5KA 1EJWA 1FWAA 2UBPA 4G7EB 4UBPA 1KRAA 1EJTA 1EF2C 1S3TA 3LA4A 4H9MA 5A6TA 4CEXA 1IE7A 1FWFA 3UBPA 1E9YA 4EP8A 1FWBA 4GY7A 4G7EA 4EPEA 1A5LA 1A5MA 1EJUA 3QGKA 5FSEA 4CEUA 1FWIA 1FWDA 1A5NA 1EJRA 1E9ZA 5FSDA 1FWHA 1FWCA 4Z42A 1KRBA 1EJSA 1FWEA 2FVHA 4EPBA 1KRCA 5G4HA 4GOAA 1A5OA 4AC7A
chains in the Genus database with same CATH superfamily
3QGAA 1EJVA 1UBPA 1EJXA 1FWGA 4EPDA 1FWJA 4FURA 2KAUA 1A5KA 1EJWA 1FWAA 2UBPA 4G7EB 4UBPA 1KRAA 1EJTA 1EF2C 1S3TA 3LA4A 4H9MA 5A6TA 4CEXA 1IE7A 1FWFA 3UBPA 1E9YA 4EP8A 1FWBA 4GY7A 4G7EA 4EPEA 1A5LA 1A5MA 1EJUA 3QGKA 5FSEA 4CEUA 1FWIA 1FWDA 1A5NA 1EJRA 1E9ZA 5FSDA 1FWHA 1FWCA 4Z42A 1KRBA 1EJSA 1FWEA 2FVHA 4EPBA 1KRCA 5G4HA 4GOAA 1A5OA 4AC7A
chains in the Genus database with same CATH topology
3QGAA 1EJVA 1UBPA 1EJXA 1FWGA 4EPDA 1FWJA 4FURA 2KAUA 1A5KA 1EJWA 1FWAA 2UBPA 4G7EB 4UBPA 1KRAA 1EJTA 1EF2C 1S3TA 3LA4A 4H9MA 5A6TA 4CEXA 1IE7A 1FWFA 3UBPA 1E9YA 4EP8A 1FWBA 4GY7A 4G7EA 4EPEA 1A5LA 1A5MA 1EJUA 3QGKA 5FSEA 4CEUA 1FWIA 1FWDA 1A5NA 1EJRA 1E9ZA 5FSDA 1FWHA 1FWCA 4Z42A 1KRBA 1EJSA 1FWEA 2FVHA 4EPBA 1KRCA 5G4HA 4GOAA 1A5OA 4AC7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QGA A;  1EJV A;  1UBP A;  1EJX A;  1FWG A;  4EPD A;  1FWJ A;  4FUR A;  2KAU A;  1A5K A;  1EJW A;  1FWA A;  2UBP A;  4G7E B;  4UBP A;  1KRA A;  1EJT A;  1EF2 C;  1S3T A;  3LA4 A;  4H9M A;  5A6T A;  4CEX A;  1IE7 A;  1FWF A;  3UBP A;  1E9Y A;  4EP8 A;  1FWB A;  4GY7 A;  4G7E A;  4EPE A;  1A5L A;  1A5M A;  1EJU A;  3QGK A;  5FSE A;  4CEU A;  1FWI A;  1FWD A;  1A5N A;  1EJR A;  1E9Z A;  5FSD A;  1FWH A;  1FWC A;  4Z42 A;  1KRB A;  1EJS A;  1FWE A;  2FVH A;  4EPB A;  1KRC A;  5G4H A;  4GOA A;  1A5O A;  4AC7 A; 
#chains in the Genus database with same CATH topology
 3QGA A;  1EJV A;  1UBP A;  1EJX A;  1FWG A;  4EPD A;  1FWJ A;  4FUR A;  2KAU A;  1A5K A;  1EJW A;  1FWA A;  2UBP A;  4G7E B;  4UBP A;  1KRA A;  1EJT A;  1EF2 C;  1S3T A;  3LA4 A;  4H9M A;  5A6T A;  4CEX A;  1IE7 A;  1FWF A;  3UBP A;  1E9Y A;  4EP8 A;  1FWB A;  4GY7 A;  4G7E A;  4EPE A;  1A5L A;  1A5M A;  1EJU A;  3QGK A;  5FSE A;  4CEU A;  1FWI A;  1FWD A;  1A5N A;  1EJR A;  1E9Z A;  5FSD A;  1FWH A;  1FWC A;  4Z42 A;  1KRB A;  1EJS A;  1FWE A;  2FVH A;  4EPB A;  1KRC A;  5G4H A;  4GOA A;  1A5O A;  4AC7 A; 
#chains in the Genus database with same CATH homology
 3QGA A;  1EJV A;  1UBP A;  1EJX A;  1FWG A;  4EPD A;  1FWJ A;  4FUR A;  2KAU A;  1A5K A;  1EJW A;  1FWA A;  2UBP A;  4G7E B;  4UBP A;  1KRA A;  1EJT A;  1EF2 C;  1S3T A;  3LA4 A;  4H9M A;  5A6T A;  4CEX A;  1IE7 A;  1FWF A;  3UBP A;  1E9Y A;  4EP8 A;  1FWB A;  4GY7 A;  4G7E A;  4EPE A;  1A5L A;  1A5M A;  1EJU A;  3QGK A;  5FSE A;  4CEU A;  1FWI A;  1FWD A;  1A5N A;  1EJR A;  1E9Z A;  5FSD A;  1FWH A;  1FWC A;  4Z42 A;  1KRB A;  1EJS A;  1FWE A;  2FVH A;  4EPB A;  1KRC A;  5G4H A;  4GOA A;  1A5O A;  4AC7 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...