1EJTA

Crystal structure of the h219q variant of klebsiella aerogenes urease
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
100
structure length
100
Chain Sequence
MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords UREASE ALPHA SUBUNIT
publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 27
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 1ejtA00
1FWJA 4GY7A 4UBPA 1EJRA 3QGKA 1FWAA 1A5MA 4CEUA 3UBPA 1FWIA 4GOAA 4G7EA 4H9MA 1A5KA 1UBPA 4AC7A 4EPBA 3LA4A 1FWHA 3QGAA 1EJVA 4FURA 1FWGA 1S3TA 2FVHA 4EP8A 4G7EB 1E9YA 1EJTA 5FSEA 4EPEA 2KAUA 1FWFA 1FWBA 1KRAA 4CEXA 1EF2C 1A5OA 1EJUA 5A6TA 1EJWA 1KRBA 1FWEA 1EJSA 1KRCA 2UBPA 5FSDA 4EPDA 1IE7A 4Z42A 1FWCA 1E9ZA 1A5NA 1A5LA 5G4HA 1FWDA 1EJXA
chains in the Genus database with same CATH superfamily
1FWJA 4GY7A 4UBPA 1EJRA 3QGKA 1FWAA 1A5MA 4CEUA 3UBPA 1FWIA 4GOAA 4G7EA 4H9MA 1A5KA 1UBPA 4AC7A 4EPBA 3LA4A 1FWHA 3QGAA 1EJVA 4FURA 1FWGA 1S3TA 2FVHA 4EP8A 4G7EB 1E9YA 1EJTA 5FSEA 4EPEA 2KAUA 1FWFA 1FWBA 1KRAA 4CEXA 1EF2C 1A5OA 1EJUA 5A6TA 1EJWA 1KRBA 1FWEA 1EJSA 1KRCA 2UBPA 5FSDA 4EPDA 1IE7A 4Z42A 1FWCA 1E9ZA 1A5NA 1A5LA 5G4HA 1FWDA 1EJXA
chains in the Genus database with same CATH topology
1FWJA 4GY7A 4UBPA 1EJRA 3QGKA 1FWAA 1A5MA 4CEUA 3UBPA 1FWIA 4GOAA 4G7EA 4H9MA 1A5KA 1UBPA 4AC7A 4EPBA 3LA4A 1FWHA 3QGAA 1EJVA 4FURA 1FWGA 1S3TA 2FVHA 4EP8A 4G7EB 1E9YA 1EJTA 5FSEA 4EPEA 2KAUA 1FWFA 1FWBA 1KRAA 4CEXA 1EF2C 1A5OA 1EJUA 5A6TA 1EJWA 1KRBA 1FWEA 1EJSA 1KRCA 2UBPA 5FSDA 4EPDA 1IE7A 4Z42A 1FWCA 1E9ZA 1A5NA 1A5LA 5G4HA 1FWDA 1EJXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FWJ A;  4GY7 A;  4UBP A;  1EJR A;  3QGK A;  1FWA A;  1A5M A;  4CEU A;  3UBP A;  1FWI A;  4GOA A;  4G7E A;  4H9M A;  1A5K A;  1UBP A;  4AC7 A;  4EPB A;  3LA4 A;  1FWH A;  3QGA A;  1EJV A;  4FUR A;  1FWG A;  1S3T A;  2FVH A;  4EP8 A;  4G7E B;  1E9Y A;  1EJT A;  5FSE A;  4EPE A;  2KAU A;  1FWF A;  1FWB A;  1KRA A;  4CEX A;  1EF2 C;  1A5O A;  1EJU A;  5A6T A;  1EJW A;  1KRB A;  1FWE A;  1EJS A;  1KRC A;  2UBP A;  5FSD A;  4EPD A;  1IE7 A;  4Z42 A;  1FWC A;  1E9Z A;  1A5N A;  1A5L A;  5G4H A;  1FWD A;  1EJX A; 
#chains in the Genus database with same CATH topology
 1FWJ A;  4GY7 A;  4UBP A;  1EJR A;  3QGK A;  1FWA A;  1A5M A;  4CEU A;  3UBP A;  1FWI A;  4GOA A;  4G7E A;  4H9M A;  1A5K A;  1UBP A;  4AC7 A;  4EPB A;  3LA4 A;  1FWH A;  3QGA A;  1EJV A;  4FUR A;  1FWG A;  1S3T A;  2FVH A;  4EP8 A;  4G7E B;  1E9Y A;  1EJT A;  5FSE A;  4EPE A;  2KAU A;  1FWF A;  1FWB A;  1KRA A;  4CEX A;  1EF2 C;  1A5O A;  1EJU A;  5A6T A;  1EJW A;  1KRB A;  1FWE A;  1EJS A;  1KRC A;  2UBP A;  5FSD A;  4EPD A;  1IE7 A;  4Z42 A;  1FWC A;  1E9Z A;  1A5N A;  1A5L A;  5G4H A;  1FWD A;  1EJX A; 
#chains in the Genus database with same CATH homology
 1FWJ A;  4GY7 A;  4UBP A;  1EJR A;  3QGK A;  1FWA A;  1A5M A;  4CEU A;  3UBP A;  1FWI A;  4GOA A;  4G7E A;  4H9M A;  1A5K A;  1UBP A;  4AC7 A;  4EPB A;  3LA4 A;  1FWH A;  3QGA A;  1EJV A;  4FUR A;  1FWG A;  1S3T A;  2FVH A;  4EP8 A;  4G7E B;  1E9Y A;  1EJT A;  5FSE A;  4EPE A;  2KAU A;  1FWF A;  1FWB A;  1KRA A;  4CEX A;  1EF2 C;  1A5O A;  1EJU A;  5A6T A;  1EJW A;  1KRB A;  1FWE A;  1EJS A;  1KRC A;  2UBP A;  5FSD A;  4EPD A;  1IE7 A;  4Z42 A;  1FWC A;  1E9Z A;  1A5N A;  1A5L A;  5G4H A;  1FWD A;  1EJX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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