1EJTB

Crystal structure of the h219q variant of klebsiella aerogenes urease
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords UREASE ALPHA SUBUNIT
publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 18
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 1ejtB00
1A5MB 1A5OB 1FWDB 1FWIB 1FWJB 4Z42B 5G4HB 5A6TB 4GY7A 3QGAA 4G7EA 1FWCB 1KRBB 3UBPB 1UBPB 1EJXB 1FWGB 1FWHB 1KRAB 4G7EB 1A5LB 1EF2B 1EJSB 2KAUB 4GOAA 4EP8B 4CEUB 4EPDB 4EPEB 1EJUB 5FSEB 1FWFB 3LA4A 1S3TB 1FWEB 1E9YA 4EPBB 4UBPB 1A5KB 1FWBB 1IE7B 3QGKA 5FSDB 1KRCB 1A5NB 4H9MA 1EJWB 1EJVB 1EJTB 1EJRB 1E9ZA 4AC7B 2UBPB 1FWAB 4CEXB
chains in the Genus database with same CATH superfamily
1A5MB 1A5OB 1FWDB 1FWIB 1FWJB 4Z42B 5G4HB 5A6TB 4GY7A 3QGAA 4G7EA 1FWCB 1KRBB 3UBPB 1UBPB 1EJXB 1FWGB 1FWHB 1KRAB 4G7EB 1A5LB 1EF2B 1EJSB 2KAUB 4GOAA 4EP8B 4CEUB 4EPDB 4EPEB 1EJUB 5FSEB 1FWFB 3LA4A 1S3TB 1FWEB 1E9YA 4EPBB 4UBPB 1A5KB 1FWBB 1IE7B 3QGKA 5FSDB 1KRCB 1A5NB 4H9MA 1EJWB 1EJVB 1EJTB 1EJRB 1E9ZA 4AC7B 2UBPB 1FWAB 4CEXB
chains in the Genus database with same CATH topology
1A5MB 1A5OB 1FWDB 1FWIB 1FWJB 4Z42B 5G4HB 5A6TB 4GY7A 3QGAA 4G7EA 1FWCB 1KRBB 3UBPB 1UBPB 1EJXB 1FWGB 1FWHB 1KRAB 4G7EB 1A5LB 1EF2B 1EJSB 2KAUB 4GOAA 4EP8B 4CEUB 4EPDB 4EPEB 1EJUB 5FSEB 1FWFB 3LA4A 1S3TB 1FWEB 1E9YA 4EPBB 4UBPB 1A5KB 1FWBB 1IE7B 3QGKA 5FSDB 1KRCB 1A5NB 4H9MA 1EJWB 1EJVB 1EJTB 1EJRB 1E9ZA 4AC7B 2UBPB 1FWAB 4CEXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A5M B;  1A5O B;  1FWD B;  1FWI B;  1FWJ B;  4Z42 B;  5G4H B;  5A6T B;  4GY7 A;  3QGA A;  4G7E A;  1FWC B;  1KRB B;  3UBP B;  1UBP B;  1EJX B;  1FWG B;  1FWH B;  1KRA B;  4G7E B;  1A5L B;  1EF2 B;  1EJS B;  2KAU B;  4GOA A;  4EP8 B;  4CEU B;  4EPD B;  4EPE B;  1EJU B;  5FSE B;  1FWF B;  3LA4 A;  1S3T B;  1FWE B;  1E9Y A;  4EPB B;  4UBP B;  1A5K B;  1FWB B;  1IE7 B;  3QGK A;  5FSD B;  1KRC B;  1A5N B;  4H9M A;  1EJW B;  1EJV B;  1EJT B;  1EJR B;  1E9Z A;  4AC7 B;  2UBP B;  1FWA B;  4CEX B; 
#chains in the Genus database with same CATH topology
 1A5M B;  1A5O B;  1FWD B;  1FWI B;  1FWJ B;  4Z42 B;  5G4H B;  5A6T B;  4GY7 A;  3QGA A;  4G7E A;  1FWC B;  1KRB B;  3UBP B;  1UBP B;  1EJX B;  1FWG B;  1FWH B;  1KRA B;  4G7E B;  1A5L B;  1EF2 B;  1EJS B;  2KAU B;  4GOA A;  4EP8 B;  4CEU B;  4EPD B;  4EPE B;  1EJU B;  5FSE B;  1FWF B;  3LA4 A;  1S3T B;  1FWE B;  1E9Y A;  4EPB B;  4UBP B;  1A5K B;  1FWB B;  1IE7 B;  3QGK A;  5FSD B;  1KRC B;  1A5N B;  4H9M A;  1EJW B;  1EJV B;  1EJT B;  1EJR B;  1E9Z A;  4AC7 B;  2UBP B;  1FWA B;  4CEX B; 
#chains in the Genus database with same CATH homology
 1A5M B;  1A5O B;  1FWD B;  1FWI B;  1FWJ B;  4Z42 B;  5G4H B;  5A6T B;  4GY7 A;  3QGA A;  4G7E A;  1FWC B;  1KRB B;  3UBP B;  1UBP B;  1EJX B;  1FWG B;  1FWH B;  1KRA B;  4G7E B;  1A5L B;  1EF2 B;  1EJS B;  2KAU B;  4GOA A;  4EP8 B;  4CEU B;  4EPD B;  4EPE B;  1EJU B;  5FSE B;  1FWF B;  3LA4 A;  1S3T B;  1FWE B;  1E9Y A;  4EPB B;  4UBP B;  1A5K B;  1FWB B;  1IE7 B;  3QGK A;  5FSD B;  1KRC B;  1A5N B;  4H9M A;  1EJW B;  1EJV B;  1EJT B;  1EJR B;  1E9Z A;  4AC7 B;  2UBP B;  1FWA B;  4CEX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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