1EJUA

Crystal structure of the h320n variant of klebsiella aerogenes urease
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
100
structure length
100
Chain Sequence
MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords UREASE ALPHA SUBUNIT
publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 28
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 1ejuA00
2KAUA 1KRAA 1FWJA 1S3TA 4EPBA 1IE7A 1FWAA 1UBPA 1A5MA 1FWCA 3QGKA 4G7EB 1FWEA 3LA4A 4H9MA 4GOAA 4UBPA 1FWIA 4EPEA 1EJTA 1E9YA 2FVHA 1EJVA 3QGAA 1FWHA 1EF2C 1FWFA 4Z42A 1FWGA 1A5LA 4GY7A 5FSDA 1EJUA 3UBPA 1E9ZA 1FWBA 4CEXA 1FWDA 4AC7A 4FURA 5A6TA 5FSEA 1A5NA 1EJSA 5G4HA 4CEUA 1A5KA 2UBPA 1EJXA 4EPDA 4G7EA 1EJRA 1EJWA 4EP8A 1KRBA 1A5OA 1KRCA
chains in the Genus database with same CATH superfamily
2KAUA 1KRAA 1FWJA 1S3TA 4EPBA 1IE7A 1FWAA 1UBPA 1A5MA 1FWCA 3QGKA 4G7EB 1FWEA 3LA4A 4H9MA 4GOAA 4UBPA 1FWIA 4EPEA 1EJTA 1E9YA 2FVHA 1EJVA 3QGAA 1FWHA 1EF2C 1FWFA 4Z42A 1FWGA 1A5LA 4GY7A 5FSDA 1EJUA 3UBPA 1E9ZA 1FWBA 4CEXA 1FWDA 4AC7A 4FURA 5A6TA 5FSEA 1A5NA 1EJSA 5G4HA 4CEUA 1A5KA 2UBPA 1EJXA 4EPDA 4G7EA 1EJRA 1EJWA 4EP8A 1KRBA 1A5OA 1KRCA
chains in the Genus database with same CATH topology
2KAUA 1KRAA 1FWJA 1S3TA 4EPBA 1IE7A 1FWAA 1UBPA 1A5MA 1FWCA 3QGKA 4G7EB 1FWEA 3LA4A 4H9MA 4GOAA 4UBPA 1FWIA 4EPEA 1EJTA 1E9YA 2FVHA 1EJVA 3QGAA 1FWHA 1EF2C 1FWFA 4Z42A 1FWGA 1A5LA 4GY7A 5FSDA 1EJUA 3UBPA 1E9ZA 1FWBA 4CEXA 1FWDA 4AC7A 4FURA 5A6TA 5FSEA 1A5NA 1EJSA 5G4HA 4CEUA 1A5KA 2UBPA 1EJXA 4EPDA 4G7EA 1EJRA 1EJWA 4EP8A 1KRBA 1A5OA 1KRCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2KAU A;  1KRA A;  1FWJ A;  1S3T A;  4EPB A;  1IE7 A;  1FWA A;  1UBP A;  1A5M A;  1FWC A;  3QGK A;  4G7E B;  1FWE A;  3LA4 A;  4H9M A;  4GOA A;  4UBP A;  1FWI A;  4EPE A;  1EJT A;  1E9Y A;  2FVH A;  1EJV A;  3QGA A;  1FWH A;  1EF2 C;  1FWF A;  4Z42 A;  1FWG A;  1A5L A;  4GY7 A;  5FSD A;  1EJU A;  3UBP A;  1E9Z A;  1FWB A;  4CEX A;  1FWD A;  4AC7 A;  4FUR A;  5A6T A;  5FSE A;  1A5N A;  1EJS A;  5G4H A;  4CEU A;  1A5K A;  2UBP A;  1EJX A;  4EPD A;  4G7E A;  1EJR A;  1EJW A;  4EP8 A;  1KRB A;  1A5O A;  1KRC A; 
#chains in the Genus database with same CATH topology
 2KAU A;  1KRA A;  1FWJ A;  1S3T A;  4EPB A;  1IE7 A;  1FWA A;  1UBP A;  1A5M A;  1FWC A;  3QGK A;  4G7E B;  1FWE A;  3LA4 A;  4H9M A;  4GOA A;  4UBP A;  1FWI A;  4EPE A;  1EJT A;  1E9Y A;  2FVH A;  1EJV A;  3QGA A;  1FWH A;  1EF2 C;  1FWF A;  4Z42 A;  1FWG A;  1A5L A;  4GY7 A;  5FSD A;  1EJU A;  3UBP A;  1E9Z A;  1FWB A;  4CEX A;  1FWD A;  4AC7 A;  4FUR A;  5A6T A;  5FSE A;  1A5N A;  1EJS A;  5G4H A;  4CEU A;  1A5K A;  2UBP A;  1EJX A;  4EPD A;  4G7E A;  1EJR A;  1EJW A;  4EP8 A;  1KRB A;  1A5O A;  1KRC A; 
#chains in the Genus database with same CATH homology
 2KAU A;  1KRA A;  1FWJ A;  1S3T A;  4EPB A;  1IE7 A;  1FWA A;  1UBP A;  1A5M A;  1FWC A;  3QGK A;  4G7E B;  1FWE A;  3LA4 A;  4H9M A;  4GOA A;  4UBP A;  1FWI A;  4EPE A;  1EJT A;  1E9Y A;  2FVH A;  1EJV A;  3QGA A;  1FWH A;  1EF2 C;  1FWF A;  4Z42 A;  1FWG A;  1A5L A;  4GY7 A;  5FSD A;  1EJU A;  3UBP A;  1E9Z A;  1FWB A;  4CEX A;  1FWD A;  4AC7 A;  4FUR A;  5A6T A;  5FSE A;  1A5N A;  1EJS A;  5G4H A;  4CEU A;  1A5K A;  2UBP A;  1EJX A;  4EPD A;  4G7E A;  1EJR A;  1EJW A;  4EP8 A;  1KRB A;  1A5O A;  1KRC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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