1EJUB

Crystal structure of the h320n variant of klebsiella aerogenes urease
Total Genus 16
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords UREASE ALPHA SUBUNIT
publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 16
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 1ejuB00
4EPEB 1E9YA 1A5KB 1EJSB 1A5MB 1EJWB 1KRBB 1KRCB 1EJVB 1FWDB 1E9ZA 1FWAB 5A6TB 4CEXB 3QGKA 4CEUB 4GY7A 1FWFB 1FWGB 1EJUB 5G4HB 4Z42B 1A5LB 1FWIB 4AC7B 3QGAA 1FWHB 1UBPB 5FSEB 4EPDB 1A5NB 3LA4A 4H9MA 1A5OB 1IE7B 5FSDB 1FWJB 1FWBB 4G7EA 3UBPB 1EF2B 4EPBB 1EJTB 1S3TB 2KAUB 1KRAB 1FWEB 2UBPB 4G7EB 1EJXB 4UBPB 1FWCB 1EJRB 4GOAA 4EP8B
chains in the Genus database with same CATH superfamily
4EPEB 1E9YA 1A5KB 1EJSB 1A5MB 1EJWB 1KRBB 1KRCB 1EJVB 1FWDB 1E9ZA 1FWAB 5A6TB 4CEXB 3QGKA 4CEUB 4GY7A 1FWFB 1FWGB 1EJUB 5G4HB 4Z42B 1A5LB 1FWIB 4AC7B 3QGAA 1FWHB 1UBPB 5FSEB 4EPDB 1A5NB 3LA4A 4H9MA 1A5OB 1IE7B 5FSDB 1FWJB 1FWBB 4G7EA 3UBPB 1EF2B 4EPBB 1EJTB 1S3TB 2KAUB 1KRAB 1FWEB 2UBPB 4G7EB 1EJXB 4UBPB 1FWCB 1EJRB 4GOAA 4EP8B
chains in the Genus database with same CATH topology
4EPEB 1E9YA 1A5KB 1EJSB 1A5MB 1EJWB 1KRBB 1KRCB 1EJVB 1FWDB 1E9ZA 1FWAB 5A6TB 4CEXB 3QGKA 4CEUB 4GY7A 1FWFB 1FWGB 1EJUB 5G4HB 4Z42B 1A5LB 1FWIB 4AC7B 3QGAA 1FWHB 1UBPB 5FSEB 4EPDB 1A5NB 3LA4A 4H9MA 1A5OB 1IE7B 5FSDB 1FWJB 1FWBB 4G7EA 3UBPB 1EF2B 4EPBB 1EJTB 1S3TB 2KAUB 1KRAB 1FWEB 2UBPB 4G7EB 1EJXB 4UBPB 1FWCB 1EJRB 4GOAA 4EP8B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EPE B;  1E9Y A;  1A5K B;  1EJS B;  1A5M B;  1EJW B;  1KRB B;  1KRC B;  1EJV B;  1FWD B;  1E9Z A;  1FWA B;  5A6T B;  4CEX B;  3QGK A;  4CEU B;  4GY7 A;  1FWF B;  1FWG B;  1EJU B;  5G4H B;  4Z42 B;  1A5L B;  1FWI B;  4AC7 B;  3QGA A;  1FWH B;  1UBP B;  5FSE B;  4EPD B;  1A5N B;  3LA4 A;  4H9M A;  1A5O B;  1IE7 B;  5FSD B;  1FWJ B;  1FWB B;  4G7E A;  3UBP B;  1EF2 B;  4EPB B;  1EJT B;  1S3T B;  2KAU B;  1KRA B;  1FWE B;  2UBP B;  4G7E B;  1EJX B;  4UBP B;  1FWC B;  1EJR B;  4GOA A;  4EP8 B; 
#chains in the Genus database with same CATH topology
 4EPE B;  1E9Y A;  1A5K B;  1EJS B;  1A5M B;  1EJW B;  1KRB B;  1KRC B;  1EJV B;  1FWD B;  1E9Z A;  1FWA B;  5A6T B;  4CEX B;  3QGK A;  4CEU B;  4GY7 A;  1FWF B;  1FWG B;  1EJU B;  5G4H B;  4Z42 B;  1A5L B;  1FWI B;  4AC7 B;  3QGA A;  1FWH B;  1UBP B;  5FSE B;  4EPD B;  1A5N B;  3LA4 A;  4H9M A;  1A5O B;  1IE7 B;  5FSD B;  1FWJ B;  1FWB B;  4G7E A;  3UBP B;  1EF2 B;  4EPB B;  1EJT B;  1S3T B;  2KAU B;  1KRA B;  1FWE B;  2UBP B;  4G7E B;  1EJX B;  4UBP B;  1FWC B;  1EJR B;  4GOA A;  4EP8 B; 
#chains in the Genus database with same CATH homology
 4EPE B;  1E9Y A;  1A5K B;  1EJS B;  1A5M B;  1EJW B;  1KRB B;  1KRC B;  1EJV B;  1FWD B;  1E9Z A;  1FWA B;  5A6T B;  4CEX B;  3QGK A;  4CEU B;  4GY7 A;  1FWF B;  1FWG B;  1EJU B;  5G4H B;  4Z42 B;  1A5L B;  1FWI B;  4AC7 B;  3QGA A;  1FWH B;  1UBP B;  5FSE B;  4EPD B;  1A5N B;  3LA4 A;  4H9M A;  1A5O B;  1IE7 B;  5FSD B;  1FWJ B;  1FWB B;  4G7E A;  3UBP B;  1EF2 B;  4EPB B;  1EJT B;  1S3T B;  2KAU B;  1KRA B;  1FWE B;  2UBP B;  4G7E B;  1EJX B;  4UBP B;  1FWC B;  1EJR B;  4GOA A;  4EP8 B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...