1EJVA

Crystal structure of the h320q variant of klebsiella aerogenes urease
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
100
structure length
100
Chain Sequence
MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords UREASE ALPHA SUBUNIT
publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 27
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 1ejvA00
5G4HA 1A5OA 4G7EB 1A5MA 4GOAA 2FVHA 1EJTA 2KAUA 1FWCA 2UBPA 4AC7A 4G7EA 4H9MA 1FWFA 4EP8A 1A5KA 1FWBA 1KRBA 1A5NA 1UBPA 4FURA 5FSEA 4CEUA 5A6TA 1E9ZA 1FWHA 1EJRA 1EJWA 1IE7A 5FSDA 4EPBA 1A5LA 3QGAA 1EJVA 1KRCA 1FWJA 1S3TA 4GY7A 1FWIA 1EJXA 1EJUA 4EPEA 1EJSA 1KRAA 4EPDA 1E9YA 1FWDA 1FWAA 1FWGA 3UBPA 3LA4A 4Z42A 3QGKA 1FWEA 1EF2C 4CEXA 4UBPA
chains in the Genus database with same CATH superfamily
5G4HA 1A5OA 4G7EB 1A5MA 4GOAA 2FVHA 1EJTA 2KAUA 1FWCA 2UBPA 4AC7A 4G7EA 4H9MA 1FWFA 4EP8A 1A5KA 1FWBA 1KRBA 1A5NA 1UBPA 4FURA 5FSEA 4CEUA 5A6TA 1E9ZA 1FWHA 1EJRA 1EJWA 1IE7A 5FSDA 4EPBA 1A5LA 3QGAA 1EJVA 1KRCA 1FWJA 1S3TA 4GY7A 1FWIA 1EJXA 1EJUA 4EPEA 1EJSA 1KRAA 4EPDA 1E9YA 1FWDA 1FWAA 1FWGA 3UBPA 3LA4A 4Z42A 3QGKA 1FWEA 1EF2C 4CEXA 4UBPA
chains in the Genus database with same CATH topology
5G4HA 1A5OA 4G7EB 1A5MA 4GOAA 2FVHA 1EJTA 2KAUA 1FWCA 2UBPA 4AC7A 4G7EA 4H9MA 1FWFA 4EP8A 1A5KA 1FWBA 1KRBA 1A5NA 1UBPA 4FURA 5FSEA 4CEUA 5A6TA 1E9ZA 1FWHA 1EJRA 1EJWA 1IE7A 5FSDA 4EPBA 1A5LA 3QGAA 1EJVA 1KRCA 1FWJA 1S3TA 4GY7A 1FWIA 1EJXA 1EJUA 4EPEA 1EJSA 1KRAA 4EPDA 1E9YA 1FWDA 1FWAA 1FWGA 3UBPA 3LA4A 4Z42A 3QGKA 1FWEA 1EF2C 4CEXA 4UBPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5G4H A;  1A5O A;  4G7E B;  1A5M A;  4GOA A;  2FVH A;  1EJT A;  2KAU A;  1FWC A;  2UBP A;  4AC7 A;  4G7E A;  4H9M A;  1FWF A;  4EP8 A;  1A5K A;  1FWB A;  1KRB A;  1A5N A;  1UBP A;  4FUR A;  5FSE A;  4CEU A;  5A6T A;  1E9Z A;  1FWH A;  1EJR A;  1EJW A;  1IE7 A;  5FSD A;  4EPB A;  1A5L A;  3QGA A;  1EJV A;  1KRC A;  1FWJ A;  1S3T A;  4GY7 A;  1FWI A;  1EJX A;  1EJU A;  4EPE A;  1EJS A;  1KRA A;  4EPD A;  1E9Y A;  1FWD A;  1FWA A;  1FWG A;  3UBP A;  3LA4 A;  4Z42 A;  3QGK A;  1FWE A;  1EF2 C;  4CEX A;  4UBP A; 
#chains in the Genus database with same CATH topology
 5G4H A;  1A5O A;  4G7E B;  1A5M A;  4GOA A;  2FVH A;  1EJT A;  2KAU A;  1FWC A;  2UBP A;  4AC7 A;  4G7E A;  4H9M A;  1FWF A;  4EP8 A;  1A5K A;  1FWB A;  1KRB A;  1A5N A;  1UBP A;  4FUR A;  5FSE A;  4CEU A;  5A6T A;  1E9Z A;  1FWH A;  1EJR A;  1EJW A;  1IE7 A;  5FSD A;  4EPB A;  1A5L A;  3QGA A;  1EJV A;  1KRC A;  1FWJ A;  1S3T A;  4GY7 A;  1FWI A;  1EJX A;  1EJU A;  4EPE A;  1EJS A;  1KRA A;  4EPD A;  1E9Y A;  1FWD A;  1FWA A;  1FWG A;  3UBP A;  3LA4 A;  4Z42 A;  3QGK A;  1FWE A;  1EF2 C;  4CEX A;  4UBP A; 
#chains in the Genus database with same CATH homology
 5G4H A;  1A5O A;  4G7E B;  1A5M A;  4GOA A;  2FVH A;  1EJT A;  2KAU A;  1FWC A;  2UBP A;  4AC7 A;  4G7E A;  4H9M A;  1FWF A;  4EP8 A;  1A5K A;  1FWB A;  1KRB A;  1A5N A;  1UBP A;  4FUR A;  5FSE A;  4CEU A;  5A6T A;  1E9Z A;  1FWH A;  1EJR A;  1EJW A;  1IE7 A;  5FSD A;  4EPB A;  1A5L A;  3QGA A;  1EJV A;  1KRC A;  1FWJ A;  1S3T A;  4GY7 A;  1FWI A;  1EJX A;  1EJU A;  4EPE A;  1EJS A;  1KRA A;  4EPD A;  1E9Y A;  1FWD A;  1FWA A;  1FWG A;  3UBP A;  3LA4 A;  4Z42 A;  3QGK A;  1FWE A;  1EF2 C;  4CEX A;  4UBP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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