1EJVB

Crystal structure of the h320q variant of klebsiella aerogenes urease
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords UREASE ALPHA SUBUNIT
publication title Kinetic and structural characterization of urease active site variants.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 17
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 1ejvB00
1FWDB 5A6TB 1A5OB 1FWGB 1IE7B 2UBPB 1EJWB 4G7EB 1FWJB 1FWFB 4EPDB 1FWAB 3LA4A 1EJRB 1EJSB 5G4HB 3QGAA 1EJTB 1E9YA 1FWIB 1EJVB 1S3TB 5FSDB 4CEUB 1A5LB 1A5NB 4GOAA 4EPEB 1EJUB 1FWHB 4UBPB 1E9ZA 4CEXB 1UBPB 4H9MA 1KRCB 5FSEB 3UBPB 1KRBB 4AC7B 4EPBB 1A5MB 1FWCB 1FWBB 3QGKA 1EF2B 1FWEB 4Z42B 1EJXB 4EP8B 4GY7A 1A5KB 2KAUB 4G7EA 1KRAB
chains in the Genus database with same CATH superfamily
1FWDB 5A6TB 1A5OB 1FWGB 1IE7B 2UBPB 1EJWB 4G7EB 1FWJB 1FWFB 4EPDB 1FWAB 3LA4A 1EJRB 1EJSB 5G4HB 3QGAA 1EJTB 1E9YA 1FWIB 1EJVB 1S3TB 5FSDB 4CEUB 1A5LB 1A5NB 4GOAA 4EPEB 1EJUB 1FWHB 4UBPB 1E9ZA 4CEXB 1UBPB 4H9MA 1KRCB 5FSEB 3UBPB 1KRBB 4AC7B 4EPBB 1A5MB 1FWCB 1FWBB 3QGKA 1EF2B 1FWEB 4Z42B 1EJXB 4EP8B 4GY7A 1A5KB 2KAUB 4G7EA 1KRAB
chains in the Genus database with same CATH topology
1FWDB 5A6TB 1A5OB 1FWGB 1IE7B 2UBPB 1EJWB 4G7EB 1FWJB 1FWFB 4EPDB 1FWAB 3LA4A 1EJRB 1EJSB 5G4HB 3QGAA 1EJTB 1E9YA 1FWIB 1EJVB 1S3TB 5FSDB 4CEUB 1A5LB 1A5NB 4GOAA 4EPEB 1EJUB 1FWHB 4UBPB 1E9ZA 4CEXB 1UBPB 4H9MA 1KRCB 5FSEB 3UBPB 1KRBB 4AC7B 4EPBB 1A5MB 1FWCB 1FWBB 3QGKA 1EF2B 1FWEB 4Z42B 1EJXB 4EP8B 4GY7A 1A5KB 2KAUB 4G7EA 1KRAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FWD B;  5A6T B;  1A5O B;  1FWG B;  1IE7 B;  2UBP B;  1EJW B;  4G7E B;  1FWJ B;  1FWF B;  4EPD B;  1FWA B;  3LA4 A;  1EJR B;  1EJS B;  5G4H B;  3QGA A;  1EJT B;  1E9Y A;  1FWI B;  1EJV B;  1S3T B;  5FSD B;  4CEU B;  1A5L B;  1A5N B;  4GOA A;  4EPE B;  1EJU B;  1FWH B;  4UBP B;  1E9Z A;  4CEX B;  1UBP B;  4H9M A;  1KRC B;  5FSE B;  3UBP B;  1KRB B;  4AC7 B;  4EPB B;  1A5M B;  1FWC B;  1FWB B;  3QGK A;  1EF2 B;  1FWE B;  4Z42 B;  1EJX B;  4EP8 B;  4GY7 A;  1A5K B;  2KAU B;  4G7E A;  1KRA B; 
#chains in the Genus database with same CATH topology
 1FWD B;  5A6T B;  1A5O B;  1FWG B;  1IE7 B;  2UBP B;  1EJW B;  4G7E B;  1FWJ B;  1FWF B;  4EPD B;  1FWA B;  3LA4 A;  1EJR B;  1EJS B;  5G4H B;  3QGA A;  1EJT B;  1E9Y A;  1FWI B;  1EJV B;  1S3T B;  5FSD B;  4CEU B;  1A5L B;  1A5N B;  4GOA A;  4EPE B;  1EJU B;  1FWH B;  4UBP B;  1E9Z A;  4CEX B;  1UBP B;  4H9M A;  1KRC B;  5FSE B;  3UBP B;  1KRB B;  4AC7 B;  4EPB B;  1A5M B;  1FWC B;  1FWB B;  3QGK A;  1EF2 B;  1FWE B;  4Z42 B;  1EJX B;  4EP8 B;  4GY7 A;  1A5K B;  2KAU B;  4G7E A;  1KRA B; 
#chains in the Genus database with same CATH homology
 1FWD B;  5A6T B;  1A5O B;  1FWG B;  1IE7 B;  2UBP B;  1EJW B;  4G7E B;  1FWJ B;  1FWF B;  4EPD B;  1FWA B;  3LA4 A;  1EJR B;  1EJS B;  5G4H B;  3QGA A;  1EJT B;  1E9Y A;  1FWI B;  1EJV B;  1S3T B;  5FSD B;  4CEU B;  1A5L B;  1A5N B;  4GOA A;  4EPE B;  1EJU B;  1FWH B;  4UBP B;  1E9Z A;  4CEX B;  1UBP B;  4H9M A;  1KRC B;  5FSE B;  3UBP B;  1KRB B;  4AC7 B;  4EPB B;  1A5M B;  1FWC B;  1FWB B;  3QGK A;  1EF2 B;  1FWE B;  4Z42 B;  1EJX B;  4EP8 B;  4GY7 A;  1A5K B;  2KAU B;  4G7E A;  1KRA B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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