1EJXA

Crystal structure of wild-type klebsiella aerogenes urease at 100k
Total Genus 32
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
100
structure length
100
Chain Sequence
MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPII
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords UREASE ALPHA SUBUNIT
publication title Crystal Structure of Wild-type Klebsiella aerogenes Urease at 100K
rcsb
source organism Klebsiella aerogenes
total genus 32
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 1ejxA00
1EF2C 1FWDA 4AC7A 3UBPA 4G7EA 5G4HA 4G7EB 4EP8A 4EPBA 5FSDA 1KRAA 1EJRA 4CEUA 2FVHA 1FWGA 1IE7A 1EJSA 4CEXA 1KRBA 1A5LA 1A5NA 4FURA 1EJXA 1A5OA 1FWBA 1KRCA 1A5MA 4GY7A 1FWCA 1FWEA 1UBPA 2KAUA 5A6TA 3QGKA 1EJUA 1EJTA 1FWHA 1FWAA 3LA4A 4Z42A 1FWIA 4UBPA 4H9MA 1EJWA 1S3TA 1FWJA 4EPDA 1A5KA 3QGAA 4EPEA 5FSEA 1E9YA 4GOAA 1E9ZA 1FWFA 1EJVA 2UBPA
chains in the Genus database with same CATH superfamily
1EF2C 1FWDA 4AC7A 3UBPA 4G7EA 5G4HA 4G7EB 4EP8A 4EPBA 5FSDA 1KRAA 1EJRA 4CEUA 2FVHA 1FWGA 1IE7A 1EJSA 4CEXA 1KRBA 1A5LA 1A5NA 4FURA 1EJXA 1A5OA 1FWBA 1KRCA 1A5MA 4GY7A 1FWCA 1FWEA 1UBPA 2KAUA 5A6TA 3QGKA 1EJUA 1EJTA 1FWHA 1FWAA 3LA4A 4Z42A 1FWIA 4UBPA 4H9MA 1EJWA 1S3TA 1FWJA 4EPDA 1A5KA 3QGAA 4EPEA 5FSEA 1E9YA 4GOAA 1E9ZA 1FWFA 1EJVA 2UBPA
chains in the Genus database with same CATH topology
1EF2C 1FWDA 4AC7A 3UBPA 4G7EA 5G4HA 4G7EB 4EP8A 4EPBA 5FSDA 1KRAA 1EJRA 4CEUA 2FVHA 1FWGA 1IE7A 1EJSA 4CEXA 1KRBA 1A5LA 1A5NA 4FURA 1EJXA 1A5OA 1FWBA 1KRCA 1A5MA 4GY7A 1FWCA 1FWEA 1UBPA 2KAUA 5A6TA 3QGKA 1EJUA 1EJTA 1FWHA 1FWAA 3LA4A 4Z42A 1FWIA 4UBPA 4H9MA 1EJWA 1S3TA 1FWJA 4EPDA 1A5KA 3QGAA 4EPEA 5FSEA 1E9YA 4GOAA 1E9ZA 1FWFA 1EJVA 2UBPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EF2 C;  1FWD A;  4AC7 A;  3UBP A;  4G7E A;  5G4H A;  4G7E B;  4EP8 A;  4EPB A;  5FSD A;  1KRA A;  1EJR A;  4CEU A;  2FVH A;  1FWG A;  1IE7 A;  1EJS A;  4CEX A;  1KRB A;  1A5L A;  1A5N A;  4FUR A;  1EJX A;  1A5O A;  1FWB A;  1KRC A;  1A5M A;  4GY7 A;  1FWC A;  1FWE A;  1UBP A;  2KAU A;  5A6T A;  3QGK A;  1EJU A;  1EJT A;  1FWH A;  1FWA A;  3LA4 A;  4Z42 A;  1FWI A;  4UBP A;  4H9M A;  1EJW A;  1S3T A;  1FWJ A;  4EPD A;  1A5K A;  3QGA A;  4EPE A;  5FSE A;  1E9Y A;  4GOA A;  1E9Z A;  1FWF A;  1EJV A;  2UBP A; 
#chains in the Genus database with same CATH topology
 1EF2 C;  1FWD A;  4AC7 A;  3UBP A;  4G7E A;  5G4H A;  4G7E B;  4EP8 A;  4EPB A;  5FSD A;  1KRA A;  1EJR A;  4CEU A;  2FVH A;  1FWG A;  1IE7 A;  1EJS A;  4CEX A;  1KRB A;  1A5L A;  1A5N A;  4FUR A;  1EJX A;  1A5O A;  1FWB A;  1KRC A;  1A5M A;  4GY7 A;  1FWC A;  1FWE A;  1UBP A;  2KAU A;  5A6T A;  3QGK A;  1EJU A;  1EJT A;  1FWH A;  1FWA A;  3LA4 A;  4Z42 A;  1FWI A;  4UBP A;  4H9M A;  1EJW A;  1S3T A;  1FWJ A;  4EPD A;  1A5K A;  3QGA A;  4EPE A;  5FSE A;  1E9Y A;  4GOA A;  1E9Z A;  1FWF A;  1EJV A;  2UBP A; 
#chains in the Genus database with same CATH homology
 1EF2 C;  1FWD A;  4AC7 A;  3UBP A;  4G7E A;  5G4H A;  4G7E B;  4EP8 A;  4EPB A;  5FSD A;  1KRA A;  1EJR A;  4CEU A;  2FVH A;  1FWG A;  1IE7 A;  1EJS A;  4CEX A;  1KRB A;  1A5L A;  1A5N A;  4FUR A;  1EJX A;  1A5O A;  1FWB A;  1KRC A;  1A5M A;  4GY7 A;  1FWC A;  1FWE A;  1UBP A;  2KAU A;  5A6T A;  3QGK A;  1EJU A;  1EJT A;  1FWH A;  1FWA A;  3LA4 A;  4Z42 A;  1FWI A;  4UBP A;  4H9M A;  1EJW A;  1S3T A;  1FWJ A;  4EPD A;  1A5K A;  3QGA A;  4EPE A;  5FSE A;  1E9Y A;  4GOA A;  1E9Z A;  1FWF A;  1EJV A;  2UBP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...