1EJXB

Crystal structure of wild-type klebsiella aerogenes urease at 100k
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords UREASE ALPHA SUBUNIT
publication title Crystal Structure of Wild-type Klebsiella aerogenes Urease at 100K
rcsb
source organism Klebsiella aerogenes
total genus 20
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 2000-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 1ejxB00
1FWCB 4UBPB 1E9YA 1EJSB 5FSDB 1FWEB 4EPEB 1FWIB 1FWHB 4EPDB 1A5OB 1EJXB 3QGKA 1FWBB 4CEUB 3QGAA 1E9ZA 4G7EB 4EP8B 5G4HB 1UBPB 1S3TB 1FWAB 1KRCB 4GOAA 1EJUB 4CEXB 5FSEB 2UBPB 1KRBB 1EJRB 1EJTB 1IE7B 3UBPB 4H9MA 1FWJB 1A5NB 1EF2B 1KRAB 1A5LB 4AC7B 1FWFB 1FWDB 2KAUB 4EPBB 4Z42B 1A5MB 1EJWB 1FWGB 5A6TB 3LA4A 4G7EA 1A5KB 4GY7A 1EJVB
chains in the Genus database with same CATH superfamily
1FWCB 4UBPB 1E9YA 1EJSB 5FSDB 1FWEB 4EPEB 1FWIB 1FWHB 4EPDB 1A5OB 1EJXB 3QGKA 1FWBB 4CEUB 3QGAA 1E9ZA 4G7EB 4EP8B 5G4HB 1UBPB 1S3TB 1FWAB 1KRCB 4GOAA 1EJUB 4CEXB 5FSEB 2UBPB 1KRBB 1EJRB 1EJTB 1IE7B 3UBPB 4H9MA 1FWJB 1A5NB 1EF2B 1KRAB 1A5LB 4AC7B 1FWFB 1FWDB 2KAUB 4EPBB 4Z42B 1A5MB 1EJWB 1FWGB 5A6TB 3LA4A 4G7EA 1A5KB 4GY7A 1EJVB
chains in the Genus database with same CATH topology
1FWCB 4UBPB 1E9YA 1EJSB 5FSDB 1FWEB 4EPEB 1FWIB 1FWHB 4EPDB 1A5OB 1EJXB 3QGKA 1FWBB 4CEUB 3QGAA 1E9ZA 4G7EB 4EP8B 5G4HB 1UBPB 1S3TB 1FWAB 1KRCB 4GOAA 1EJUB 4CEXB 5FSEB 2UBPB 1KRBB 1EJRB 1EJTB 1IE7B 3UBPB 4H9MA 1FWJB 1A5NB 1EF2B 1KRAB 1A5LB 4AC7B 1FWFB 1FWDB 2KAUB 4EPBB 4Z42B 1A5MB 1EJWB 1FWGB 5A6TB 3LA4A 4G7EA 1A5KB 4GY7A 1EJVB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FWC B;  4UBP B;  1E9Y A;  1EJS B;  5FSD B;  1FWE B;  4EPE B;  1FWI B;  1FWH B;  4EPD B;  1A5O B;  1EJX B;  3QGK A;  1FWB B;  4CEU B;  3QGA A;  1E9Z A;  4G7E B;  4EP8 B;  5G4H B;  1UBP B;  1S3T B;  1FWA B;  1KRC B;  4GOA A;  1EJU B;  4CEX B;  5FSE B;  2UBP B;  1KRB B;  1EJR B;  1EJT B;  1IE7 B;  3UBP B;  4H9M A;  1FWJ B;  1A5N B;  1EF2 B;  1KRA B;  1A5L B;  4AC7 B;  1FWF B;  1FWD B;  2KAU B;  4EPB B;  4Z42 B;  1A5M B;  1EJW B;  1FWG B;  5A6T B;  3LA4 A;  4G7E A;  1A5K B;  4GY7 A;  1EJV B; 
#chains in the Genus database with same CATH topology
 1FWC B;  4UBP B;  1E9Y A;  1EJS B;  5FSD B;  1FWE B;  4EPE B;  1FWI B;  1FWH B;  4EPD B;  1A5O B;  1EJX B;  3QGK A;  1FWB B;  4CEU B;  3QGA A;  1E9Z A;  4G7E B;  4EP8 B;  5G4H B;  1UBP B;  1S3T B;  1FWA B;  1KRC B;  4GOA A;  1EJU B;  4CEX B;  5FSE B;  2UBP B;  1KRB B;  1EJR B;  1EJT B;  1IE7 B;  3UBP B;  4H9M A;  1FWJ B;  1A5N B;  1EF2 B;  1KRA B;  1A5L B;  4AC7 B;  1FWF B;  1FWD B;  2KAU B;  4EPB B;  4Z42 B;  1A5M B;  1EJW B;  1FWG B;  5A6T B;  3LA4 A;  4G7E A;  1A5K B;  4GY7 A;  1EJV B; 
#chains in the Genus database with same CATH homology
 1FWC B;  4UBP B;  1E9Y A;  1EJS B;  5FSD B;  1FWE B;  4EPE B;  1FWI B;  1FWH B;  4EPD B;  1A5O B;  1EJX B;  3QGK A;  1FWB B;  4CEU B;  3QGA A;  1E9Z A;  4G7E B;  4EP8 B;  5G4H B;  1UBP B;  1S3T B;  1FWA B;  1KRC B;  4GOA A;  1EJU B;  4CEX B;  5FSE B;  2UBP B;  1KRB B;  1EJR B;  1EJT B;  1IE7 B;  3UBP B;  4H9M A;  1FWJ B;  1A5N B;  1EF2 B;  1KRA B;  1A5L B;  4AC7 B;  1FWF B;  1FWD B;  2KAU B;  4EPB B;  4Z42 B;  1A5M B;  1EJW B;  1FWG B;  5A6T B;  3LA4 A;  4G7E A;  1A5K B;  4GY7 A;  1EJV B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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