1EOCB

Crystal structure of acinetobacter sp. adp1 protocatechuate 3,4-dioxygenase in complex with 4-nitrocatechol
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
238
structure length
238
Chain Sequence
IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Oxidoreductase
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
publication title Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase.
pubmed doi rcsb
source organism Acinetobacter sp.
total genus 55
structure length 238
sequence length 238
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2000-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00775 Dioxygenase_C Dioxygenase
B PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 1eocB00
4WHSB 3LMXA 3PCCA 3PCBM 1YKLA 2BOYA 2BUYA 4WHSD 2XSVA 1EOBB 3TH1A 1EO2B 3PCHM 3PCLA 3LMXM 3PCCM 2BV0B 2BURA 3PCNA 2BUQB 3O32A 3PCGA 4WHPA 2BUWB 1EOCA 2BUVB 3PCAA 3PCLM 3MV6A 1S9AA 3MI1A 4WHOA 3PCNM 2BUTB 1YKMB 3PCGM 2BUXA 4WHSA 3LKTA 3PCAM 1DMHA 1YKOB 3MV6M 2BUMB 3O6JA 3MI1M 3O6RA 1EO2A 3HJQA 2BUUA 1EO9A 3LKTM 1YKPB 1YKNB 3PCJA 1YKKB 2BUWA 2PCDA 2BUZB 4WHQA 1TMXA 1EOAB 3T63A 2BUTA 3PCJM 1YKMA 4WHRA 3LXVA 3HGIA 3PCEA 2XSRA 3I4VA 3MI5A 2PCDM 3PCIA 1EOBA 3T63M 3PCDA 3LXVM 3PCKA 2BURB 3PCEM 3PCFA 3MI5M 1DLQA 3HHYA 2BV0A 3PCIM 2XSUA 2AZQA 2BUQA 3HJ8A 1EOCB 3PCDM 3PCKM 2BUVA 3O5UA 3HHXA 3PCFM 4WHOB 3PCMA 4WHOD 3T67A 3MV4A 3HKPA 1YKLB 2BUYB 3I51A 3HJSA 1YKOA 3I4YA 3PCMM 2BUMA 3N9TA 2BUUB 3MFLA 1EO9B 4ILVA 3T67M 3MV4M 1YKPA 1YKNA 4WHPB 1YKKA 4WHPD 3PCBA 4WHQB 5TD3A 3MFLM 4WHRF 2BUZA 4ILTA 1DLTA 4WHRB 3PCHA 1EOAA 1DLMA 2BUXB
chains in the Genus database with same CATH superfamily
4WHSB 3LMXA 3PCCA 3PCBM 1YKLA 2BOYA 2BUYA 4WHSD 2XSVA 1EOBB 3TH1A 1EO2B 3PCHM 3PCLA 3LMXM 3PCCM 2BV0B 2BURA 3PCNA 2BUQB 3O32A 3PCGA 4WHPA 2BUWB 1EOCA 2BUVB 3PCAA 3PCLM 3MV6A 1S9AA 3MI1A 4WHOA 3PCNM 2BUTB 1YKMB 3PCGM 2BUXA 4WHSA 3LKTA 3PCAM 1DMHA 1YKOB 3MV6M 2BUMB 3O6JA 3MI1M 3O6RA 1EO2A 3HJQA 2BUUA 1EO9A 3LKTM 1YKPB 1YKNB 3PCJA 1YKKB 2BUWA 2PCDA 2BUZB 4WHQA 1TMXA 1EOAB 3T63A 2BUTA 3PCJM 1YKMA 4WHRA 3LXVA 3HGIA 3PCEA 2XSRA 3I4VA 3MI5A 2PCDM 3PCIA 1EOBA 3T63M 3PCDA 3LXVM 3PCKA 2BURB 3PCEM 3PCFA 3MI5M 1DLQA 3HHYA 2BV0A 3PCIM 2XSUA 2AZQA 2BUQA 3HJ8A 1EOCB 3PCDM 3PCKM 2BUVA 3O5UA 3HHXA 3PCFM 4WHOB 3PCMA 4WHOD 3T67A 3MV4A 3HKPA 1YKLB 2BUYB 3I51A 3HJSA 1YKOA 3I4YA 3PCMM 2BUMA 3N9TA 2BUUB 3MFLA 1EO9B 4ILVA 3T67M 3MV4M 1YKPA 1YKNA 4WHPB 1YKKA 4WHPD 3PCBA 4WHQB 5TD3A 3MFLM 4WHRF 2BUZA 4ILTA 1DLTA 4WHRB 3PCHA 1EOAA 1DLMA 2BUXB
chains in the Genus database with same CATH topology
4WHSB 3LMXA 3PCCA 3PCBM 1YKLA 2BOYA 2BUYA 4WHSD 2XSVA 1EOBB 3TH1A 1EO2B 3PCHM 3PCLA 3LMXM 3PCCM 2BV0B 2BURA 3PCNA 2BUQB 3O32A 3PCGA 4WHPA 2BUWB 1EOCA 2BUVB 3PCAA 3PCLM 3MV6A 1S9AA 3MI1A 4WHOA 3PCNM 2BUTB 1YKMB 3PCGM 2BUXA 4WHSA 3LKTA 3PCAM 1DMHA 1YKOB 3MV6M 2BUMB 3O6JA 3MI1M 3O6RA 1EO2A 3HJQA 2BUUA 1EO9A 3LKTM 1YKPB 1YKNB 3PCJA 1YKKB 2BUWA 2PCDA 2BUZB 4WHQA 1TMXA 1EOAB 3T63A 2BUTA 3PCJM 1YKMA 4WHRA 3LXVA 3HGIA 3PCEA 2XSRA 3I4VA 3MI5A 2PCDM 3PCIA 1EOBA 3T63M 3PCDA 3LXVM 3PCKA 2BURB 3PCEM 3PCFA 3MI5M 1DLQA 3HHYA 2BV0A 3PCIM 2XSUA 2AZQA 2BUQA 3HJ8A 1EOCB 3PCDM 3PCKM 2BUVA 3O5UA 3HHXA 3PCFM 4WHOB 3PCMA 4WHOD 3T67A 3MV4A 3HKPA 1YKLB 2BUYB 3I51A 3HJSA 1YKOA 3I4YA 3PCMM 2BUMA 3N9TA 2BUUB 3MFLA 1EO9B 4ILVA 3T67M 3MV4M 1YKPA 1YKNA 4WHPB 1YKKA 4WHPD 3PCBA 4WHQB 5TD3A 3MFLM 4WHRF 2BUZA 4ILTA 1DLTA 4WHRB 3PCHA 1EOAA 1DLMA 2BUXB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WHS B;  3LMX A;  3PCC A;  3PCB M;  1YKL A;  2BOY A;  2BUY A;  4WHS D;  2XSV A;  1EOB B;  3TH1 A;  1EO2 B;  3PCH M;  3PCL A;  3LMX M;  3PCC M;  2BV0 B;  2BUR A;  3PCN A;  2BUQ B;  3O32 A;  3PCG A;  4WHP A;  2BUW B;  1EOC A;  2BUV B;  3PCA A;  3PCL M;  3MV6 A;  1S9A A;  3MI1 A;  4WHO A;  3PCN M;  2BUT B;  1YKM B;  3PCG M;  2BUX A;  4WHS A;  3LKT A;  3PCA M;  1DMH A;  1YKO B;  3MV6 M;  2BUM B;  3O6J A;  3MI1 M;  3O6R A;  1EO2 A;  3HJQ A;  2BUU A;  1EO9 A;  3LKT M;  1YKP B;  1YKN B;  3PCJ A;  1YKK B;  2BUW A;  2PCD A;  2BUZ B;  4WHQ A;  1TMX A;  1EOA B;  3T63 A;  2BUT A;  3PCJ M;  1YKM A;  4WHR A;  3LXV A;  3HGI A;  3PCE A;  2XSR A;  3I4V A;  3MI5 A;  2PCD M;  3PCI A;  1EOB A;  3T63 M;  3PCD A;  3LXV M;  3PCK A;  2BUR B;  3PCE M;  3PCF A;  3MI5 M;  1DLQ A;  3HHY A;  2BV0 A;  3PCI M;  2XSU A;  2AZQ A;  2BUQ A;  3HJ8 A;  1EOC B;  3PCD M;  3PCK M;  2BUV A;  3O5U A;  3HHX A;  3PCF M;  4WHO B;  3PCM A;  4WHO D;  3T67 A;  3MV4 A;  3HKP A;  1YKL B;  2BUY B;  3I51 A;  3HJS A;  1YKO A;  3I4Y A;  3PCM M;  2BUM A;  3N9T A;  2BUU B;  3MFL A;  1EO9 B;  4ILV A;  3T67 M;  3MV4 M;  1YKP A;  1YKN A;  4WHP B;  1YKK A;  4WHP D;  3PCB A;  4WHQ B;  5TD3 A;  3MFL M;  4WHR F;  2BUZ A;  4ILT A;  1DLT A;  4WHR B;  3PCH A;  1EOA A;  1DLM A;  2BUX B; 
#chains in the Genus database with same CATH topology
 4WHS B;  3LMX A;  3PCC A;  3PCB M;  1YKL A;  2BOY A;  2BUY A;  4WHS D;  2XSV A;  1EOB B;  3TH1 A;  1EO2 B;  3PCH M;  3PCL A;  3LMX M;  3PCC M;  2BV0 B;  2BUR A;  3PCN A;  2BUQ B;  3O32 A;  3PCG A;  4WHP A;  2BUW B;  1EOC A;  2BUV B;  3PCA A;  3PCL M;  3MV6 A;  1S9A A;  3MI1 A;  4WHO A;  3PCN M;  2BUT B;  1YKM B;  3PCG M;  2BUX A;  4WHS A;  3LKT A;  3PCA M;  1DMH A;  1YKO B;  3MV6 M;  2BUM B;  3O6J A;  3MI1 M;  3O6R A;  1EO2 A;  3HJQ A;  2BUU A;  1EO9 A;  3LKT M;  1YKP B;  1YKN B;  3PCJ A;  1YKK B;  2BUW A;  2PCD A;  2BUZ B;  4WHQ A;  1TMX A;  1EOA B;  3T63 A;  2BUT A;  3PCJ M;  1YKM A;  4WHR A;  3LXV A;  3HGI A;  3PCE A;  2XSR A;  3I4V A;  3MI5 A;  2PCD M;  3PCI A;  1EOB A;  3T63 M;  3PCD A;  3LXV M;  3PCK A;  2BUR B;  3PCE M;  3PCF A;  3MI5 M;  1DLQ A;  3HHY A;  2BV0 A;  3PCI M;  2XSU A;  2AZQ A;  2BUQ A;  3HJ8 A;  1EOC B;  3PCD M;  3PCK M;  2BUV A;  3O5U A;  3HHX A;  3PCF M;  4WHO B;  3PCM A;  4WHO D;  3T67 A;  3MV4 A;  3HKP A;  1YKL B;  2BUY B;  3I51 A;  3HJS A;  1YKO A;  3I4Y A;  3PCM M;  2BUM A;  3N9T A;  2BUU B;  3MFL A;  1EO9 B;  4ILV A;  3T67 M;  3MV4 M;  1YKP A;  1YKN A;  4WHP B;  1YKK A;  4WHP D;  3PCB A;  4WHQ B;  5TD3 A;  3MFL M;  4WHR F;  2BUZ A;  4ILT A;  1DLT A;  4WHR B;  3PCH A;  1EOA A;  1DLM A;  2BUX B; 
#chains in the Genus database with same CATH homology
 4WHS B;  3LMX A;  3PCC A;  3PCB M;  1YKL A;  2BOY A;  2BUY A;  4WHS D;  2XSV A;  1EOB B;  3TH1 A;  1EO2 B;  3PCH M;  3PCL A;  3LMX M;  3PCC M;  2BV0 B;  2BUR A;  3PCN A;  2BUQ B;  3O32 A;  3PCG A;  4WHP A;  2BUW B;  1EOC A;  2BUV B;  3PCA A;  3PCL M;  3MV6 A;  1S9A A;  3MI1 A;  4WHO A;  3PCN M;  2BUT B;  1YKM B;  3PCG M;  2BUX A;  4WHS A;  3LKT A;  3PCA M;  1DMH A;  1YKO B;  3MV6 M;  2BUM B;  3O6J A;  3MI1 M;  3O6R A;  1EO2 A;  3HJQ A;  2BUU A;  1EO9 A;  3LKT M;  1YKP B;  1YKN B;  3PCJ A;  1YKK B;  2BUW A;  2PCD A;  2BUZ B;  4WHQ A;  1TMX A;  1EOA B;  3T63 A;  2BUT A;  3PCJ M;  1YKM A;  4WHR A;  3LXV A;  3HGI A;  3PCE A;  2XSR A;  3I4V A;  3MI5 A;  2PCD M;  3PCI A;  1EOB A;  3T63 M;  3PCD A;  3LXV M;  3PCK A;  2BUR B;  3PCE M;  3PCF A;  3MI5 M;  1DLQ A;  3HHY A;  2BV0 A;  3PCI M;  2XSU A;  2AZQ A;  2BUQ A;  3HJ8 A;  1EOC B;  3PCD M;  3PCK M;  2BUV A;  3O5U A;  3HHX A;  3PCF M;  4WHO B;  3PCM A;  4WHO D;  3T67 A;  3MV4 A;  3HKP A;  1YKL B;  2BUY B;  3I51 A;  3HJS A;  1YKO A;  3I4Y A;  3PCM M;  2BUM A;  3N9T A;  2BUU B;  3MFL A;  1EO9 B;  4ILV A;  3T67 M;  3MV4 M;  1YKP A;  1YKN A;  4WHP B;  1YKK A;  4WHP D;  3PCB A;  4WHQ B;  5TD3 A;  3MFL M;  4WHR F;  2BUZ A;  4ILT A;  1DLT A;  4WHR B;  3PCH A;  1EOA A;  1DLM A;  2BUX B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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