1ESKA

Solution structure of ncp7 from hiv-1
Total Genus 9
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
42
structure length
42
Chain Sequence
NVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords GAG POLYPROTEIN
publication title Solution Structure of (12-53)NCp7 of HIV-1
rcsb
total genus 9
structure length 42
sequence length 42
ec nomenclature ec 2.7.7.49: RNA-directed DNA polymerase.
pdb deposition date 2000-04-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00098 zf-CCHC Zinc knuckle
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.60.10 Few Secondary Structures Irregular HIV-1 Nucleocapsid Protein Zinc finger, CCHC-type 1eskA00
1Q3YA 2LI8A 1A1TA 1WWEA 2JZWA 1AAFA 2EXFA 1WWFA 1BJ6A 2EC7A 3TRZA 2L4LA 3NYBB 1WWDA 2M3ZA 1MFSA 3TS0A 2YSAA 1F6UA 2IHXA 3TS2A 1WWGA 1A6BB 1Q3ZA 2CQFA 1U6PA 1ESKA
chains in the Genus database with same CATH superfamily
1Q3YA 2LI8A 1A1TA 1WWEA 2JZWA 1AAFA 2EXFA 1WWFA 1BJ6A 2EC7A 3TRZA 2L4LA 3NYBB 1WWDA 2M3ZA 1MFSA 3TS0A 2YSAA 1F6UA 2IHXA 3TS2A 1WWGA 1A6BB 1Q3ZA 2CQFA 1U6PA 1ESKA
chains in the Genus database with same CATH topology
1Q3YA 2LI8A 1A1TA 1WWEA 2JZWA 1AAFA 2EXFA 1WWFA 1BJ6A 2EC7A 3TRZA 2L4LA 3NYBB 1WWDA 2M3ZA 1MFSA 3TS0A 2YSAA 1F6UA 2IHXA 3TS2A 1WWGA 1A6BB 1Q3ZA 2CQFA 1U6PA 1ESKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q3Y A;  2LI8 A;  1A1T A;  1WWE A;  2JZW A;  1AAF A;  2EXF A;  1WWF A;  1BJ6 A;  2EC7 A;  3TRZ A;  2L4L A;  3NYB B;  1WWD A;  2M3Z A;  1MFS A;  3TS0 A;  2YSA A;  1F6U A;  2IHX A;  3TS2 A;  1WWG A;  1A6B B;  1Q3Z A;  2CQF A;  1U6P A;  1ESK A; 
#chains in the Genus database with same CATH topology
 1Q3Y A;  2LI8 A;  1A1T A;  1WWE A;  2JZW A;  1AAF A;  2EXF A;  1WWF A;  1BJ6 A;  2EC7 A;  3TRZ A;  2L4L A;  3NYB B;  1WWD A;  2M3Z A;  1MFS A;  3TS0 A;  2YSA A;  1F6U A;  2IHX A;  3TS2 A;  1WWG A;  1A6B B;  1Q3Z A;  2CQF A;  1U6P A;  1ESK A; 
#chains in the Genus database with same CATH homology
 1Q3Y A;  2LI8 A;  1A1T A;  1WWE A;  2JZW A;  1AAF A;  2EXF A;  1WWF A;  1BJ6 A;  2EC7 A;  3TRZ A;  2L4L A;  3NYB B;  1WWD A;  2M3Z A;  1MFS A;  3TS0 A;  2YSA A;  1F6U A;  2IHX A;  3TS2 A;  1WWG A;  1A6B B;  1Q3Z A;  2CQF A;  1U6P A;  1ESK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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