1EV14

Echovirus 1
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
61
Chain Sequence
GAQVSTQKTGAHETSIIHYTNINYYKDAASNSANRQDFTQDPGKFTEPMKDVMIKTLPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords ECHOVIRUS 1
publication title Structure determination of echovirus 1.
pubmed doi rcsb
total genus 4
structure length 61
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-12-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1ev1400
1RUJ4 1VBB4 1RUC4 1RUI4 1ASJ4 2X5ID 1NCQD 1R094 1RUE4 1PO24 1RUF4 3JBG4 1HRV4 1RMU4 1VBE4 1H8TD 2RS14 2RS34 1VRH4 1EV14 1AL24 2PLV4 4PDWD 4Q4W4 4GB34 1RHI4 4Q4Y4 1MQTD 1RUD4 1BEV4 3J8F4 2HWC4 4Q4X4 1COV4 2HWB4 1AR94 1AR74 1PO14 1Z7S4 2RMU4 1HXS4 1RUG4 1K5MD 1EAH4 2RR14 1PVC4 1HRI4 1AR64 3JD74 1VBC4 2R064 1OOPD 1AR84 1D4M4 1PIV4 1RUH4 2RM24 1POV0 1RVF4 2R074 2R044 2RS54 1NA1D 4RHV4 1R084 4Q4V4 1VBD4 1VBA4
chains in the Genus database with same CATH superfamily
3VR8A 1RUC4 1RUI4 1RUF4 3JBG4 1L0VA 1VRH4 2PLV4 2ACZA 3AEBA 1RHI4 1XHXA 1RUD4 3ABVA 3AEAA 1ZP0A 2HWB4 1HXS4 1KFYA 1AR64 2EX3A 2R064 1AR84 1D4M4 2WDQA 1PIV4 2RM24 3AE8A 2RS54 2R7FA 1ZOYA 1VBB4 1ASJ4 2X5ID 1NCQD 4KX6A 4YTMA 1PO24 2WU5A 3CIRA 1H8TD 3P4RA 3AEGA 2PYLA 1EV14 3AE1A 4Q4W4 4YSXA 4Q4Y4 1NENA 1BEV4 3J8F4 3SUCA 2PY5A 4YT0A 1COV4 1AR94 1PO14 2RMU4 3VRAA 1K5MD 1EAH4 1PVC4 2PZSA 1HRI4 2PW9A 3AE6A 1OOPD 3FI7A 3AE5A 1KF6A 2WU2A 1RVF4 2R074 4YSZA 1NA1D 1R084 4Q4V4 3P4SA 3P4QA 1RUJ4 2WS3A 2WDVA 1RUE4 1YQ4A 2H89A 1VBE4 2RS34 1AL24 4GB34 3AE3A 1MQTD 2PYJA 1NEKA 2HWC4 3AE7A 3AEEA 2RR14 2WDRA 3SFDA 4YSYA 3JD74 3AE4A 2H88A 3AE9A 1RUH4 5C3JA 4YXDA 3AECA 1VBD4 2WP9A 3AEDA 3GQKA 1XI1A 1R094 1HRV4 5C2TA 1RMU4 2RS14 2WQYA 3VRBA 4PDWD 2B76A 3P4PA 4Q4X4 3GQHA 2FBWA 3VR9A 1AR74 1Z7S4 4YTNA 1RUG4 3AE2A 4YTPA 1VBC4 1YQ3A 1XHZA 3AEFA 1POV0 2R044 4RHV4 3SFEA 1VBA4
chains in the Genus database with same CATH topology
1RUJ4 1VBB4 1RUC4 1RUI4 1ASJ4 2X5ID 1NCQD 1R094 1RUE4 1PO24 1RUF4 3JBG4 1HRV4 1RMU4 1VBE4 1H8TD 2RS14 2RS34 1VRH4 1EV14 1AL24 2PLV4 4PDWD 4Q4W4 4GB34 1RHI4 4Q4Y4 1MQTD 1RUD4 1BEV4 3J8F4 2HWC4 4Q4X4 1COV4 2HWB4 1AR94 1AR74 1PO14 1Z7S4 2RMU4 1HXS4 1RUG4 1K5MD 1EAH4 2RR14 1PVC4 1HRI4 1AR64 3JD74 1VBC4 2R064 1OOPD 1AR84 1D4M4 1PIV4 1RUH4 2RM24 1POV0 1RVF4 2R074 2R044 2RS54 1NA1D 4RHV4 1R084 4Q4V4 1VBD4 1VBA4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUJ 4;  1VBB 4;  1RUC 4;  1RUI 4;  1ASJ 4;  2X5I D;  1NCQ D;  1R09 4;  1RUE 4;  1PO2 4;  1RUF 4;  3JBG 4;  1HRV 4;  1RMU 4;  1VBE 4;  1H8T D;  2RS1 4;  2RS3 4;  1VRH 4;  1EV1 4;  1AL2 4;  2PLV 4;  4PDW D;  4Q4W 4;  4GB3 4;  1RHI 4;  4Q4Y 4;  1MQT D;  1RUD 4;  1BEV 4;  3J8F 4;  2HWC 4;  4Q4X 4;  1COV 4;  2HWB 4;  1AR9 4;  1AR7 4;  1PO1 4;  1Z7S 4;  2RMU 4;  1HXS 4;  1RUG 4;  1K5M D;  1EAH 4;  2RR1 4;  1PVC 4;  1HRI 4;  1AR6 4;  3JD7 4;  1VBC 4;  2R06 4;  1OOP D;  1AR8 4;  1D4M 4;  1PIV 4;  1RUH 4;  2RM2 4;  1POV 0;  1RVF 4;  2R07 4;  2R04 4;  2RS5 4;  1NA1 D;  4RHV 4;  1R08 4;  4Q4V 4;  1VBD 4;  1VBA 4; 
#chains in the Genus database with same CATH topology
 3VR8 A;  1RUC 4;  1RUI 4;  1RUF 4;  3JBG 4;  1L0V A;  1VRH 4;  2PLV 4;  2ACZ A;  3AEB A;  1RHI 4;  1XHX A;  1RUD 4;  3ABV A;  3AEA A;  1ZP0 A;  2HWB 4;  1HXS 4;  1KFY A;  1AR6 4;  2EX3 A;  2R06 4;  1AR8 4;  1D4M 4;  2WDQ A;  1PIV 4;  2RM2 4;  3AE8 A;  2RS5 4;  2R7F A;  1ZOY A;  1VBB 4;  1ASJ 4;  2X5I D;  1NCQ D;  4KX6 A;  4YTM A;  1PO2 4;  2WU5 A;  3CIR A;  1H8T D;  3P4R A;  3AEG A;  2PYL A;  1EV1 4;  3AE1 A;  4Q4W 4;  4YSX A;  4Q4Y 4;  1NEN A;  1BEV 4;  3J8F 4;  3SUC A;  2PY5 A;  4YT0 A;  1COV 4;  1AR9 4;  1PO1 4;  2RMU 4;  3VRA A;  1K5M D;  1EAH 4;  1PVC 4;  2PZS A;  1HRI 4;  2PW9 A;  3AE6 A;  1OOP D;  3FI7 A;  3AE5 A;  1KF6 A;  2WU2 A;  1RVF 4;  2R07 4;  4YSZ A;  1NA1 D;  1R08 4;  4Q4V 4;  3P4S A;  3P4Q A;  1RUJ 4;  2WS3 A;  2WDV A;  1RUE 4;  1YQ4 A;  2H89 A;  1VBE 4;  2RS3 4;  1AL2 4;  4GB3 4;  3AE3 A;  1MQT D;  2PYJ A;  1NEK A;  2HWC 4;  3AE7 A;  3AEE A;  2RR1 4;  2WDR A;  3SFD A;  4YSY A;  3JD7 4;  3AE4 A;  2H88 A;  3AE9 A;  1RUH 4;  5C3J A;  4YXD A;  3AEC A;  1VBD 4;  2WP9 A;  3AED A;  3GQK A;  1XI1 A;  1R09 4;  1HRV 4;  5C2T A;  1RMU 4;  2RS1 4;  2WQY A;  3VRB A;  4PDW D;  2B76 A;  3P4P A;  4Q4X 4;  3GQH A;  2FBW A;  3VR9 A;  1AR7 4;  1Z7S 4;  4YTN A;  1RUG 4;  3AE2 A;  4YTP A;  1VBC 4;  1YQ3 A;  1XHZ A;  3AEF A;  1POV 0;  2R04 4;  4RHV 4;  3SFE A;  1VBA 4; 
#chains in the Genus database with same CATH homology
 1RUJ 4;  1VBB 4;  1RUC 4;  1RUI 4;  1ASJ 4;  2X5I D;  1NCQ D;  1R09 4;  1RUE 4;  1PO2 4;  1RUF 4;  3JBG 4;  1HRV 4;  1RMU 4;  1VBE 4;  1H8T D;  2RS1 4;  2RS3 4;  1VRH 4;  1EV1 4;  1AL2 4;  2PLV 4;  4PDW D;  4Q4W 4;  4GB3 4;  1RHI 4;  4Q4Y 4;  1MQT D;  1RUD 4;  1BEV 4;  3J8F 4;  2HWC 4;  4Q4X 4;  1COV 4;  2HWB 4;  1AR9 4;  1AR7 4;  1PO1 4;  1Z7S 4;  2RMU 4;  1HXS 4;  1RUG 4;  1K5M D;  1EAH 4;  2RR1 4;  1PVC 4;  1HRI 4;  1AR6 4;  3JD7 4;  1VBC 4;  2R06 4;  1OOP D;  1AR8 4;  1D4M 4;  1PIV 4;  1RUH 4;  2RM2 4;  1POV 0;  1RVF 4;  2R07 4;  2R04 4;  2RS5 4;  1NA1 D;  4RHV 4;  1R08 4;  4Q4V 4;  1VBD 4;  1VBA 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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