1EYUA

High resolution structure of the pvuii endonculease/cognate dna complex at ph 4.6
Total Genus 50
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
156
structure length
156
Chain Sequence
SHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPGREGNDAVDNAGQEYELKSINIDLTKGFSTHHHMNPVIIAKYRQVPWIFAIYRGIAIEAIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title PvuII endonuclease contains two calcium ions in active sites.
pubmed doi rcsb
molecule tags Hydrolase/dna
source organism Proteus vulgaris
molecule keywords DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C)-3')
total genus 50
structure length 156
sequence length 156
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2000-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09225 Endonuc-PvuII Restriction endonuclease PvuII
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.210.10 Alpha Beta 3-Layer(aba) Sandwich PvuII Endonuclease; Chain A PVUII Endonuclease, subunit A 1eyuA00
1EYUA 2PVIA 1H56A 1PVIA 3PVIA 1K0ZA 1PVUA 1F0OA 1NI0A
chains in the Genus database with same CATH superfamily
1EYUA 4KYWA 4ESJA 2ODHA 2ODIA 2PVIA 2OA9A 1H56A 3IMBA 1PVIA 2Q10A 3PVIA 2OAAA 1K0ZA 1PVUA 1F0OA 1NI0A
chains in the Genus database with same CATH topology
1EYUA 2PVIA 1H56A 1PVIA 3PVIA 1K0ZA 1PVUA 1F0OA 1NI0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EYU A;  2PVI A;  1H56 A;  1PVI A;  3PVI A;  1K0Z A;  1PVU A;  1F0O A;  1NI0 A; 
#chains in the Genus database with same CATH topology
 1EYU A;  4KYW A;  4ESJ A;  2ODH A;  2ODI A;  2PVI A;  2OA9 A;  1H56 A;  3IMB A;  1PVI A;  2Q10 A;  3PVI A;  2OAA A;  1K0Z A;  1PVU A;  1F0O A;  1NI0 A; 
#chains in the Genus database with same CATH homology
 1EYU A;  2PVI A;  1H56 A;  1PVI A;  3PVI A;  1K0Z A;  1PVU A;  1F0O A;  1NI0 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...