1F04A

Solution structure of oxidized bovine microsomal cytochrome b5 mutant (e44a, e48a, e56a, d60a) and its interaction with cytochrome c
Total Genus 16
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
16
sequence length
82
structure length
82
Chain Sequence
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHSTDARELSKTFIIGELHPDDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords CYTOCHROME B5
publication title Solution structure of cytochrome b(5) mutant (E44/48/56A/D60A) and its interaction with cytochrome c.
pubmed doi rcsb
source organism Bos taurus
total genus 16
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2000-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1f04A00
2OZ0A 1CXYA 1J03A 1B5MA 1AWPA 1BFXA 1EUEA 1F03A 1IETA 1LR6A 1HKOA 1M20A 1B5AA 1I8CA 1LJ0A 1LCOA 1MNYA 2AXXA 1M2MA 3MUSA 1J0QA 3X32A 1I5UA 1NX7A 2I96A 1AW3A 1BLVA 2IBJA 3KS0A 2I89A 3OZZB 3LF5A 3X35A 1U9MA 1MJ4A 1LTDA 1DO9A 1F04A 1AXXA 1EHBA 4HINA 1KBIA 2M33A 1FCBA 3X34A 1IEUA 4HILA 2KEOA 1B5BA 1LDCA 1ICCA 1CYOA 1T0GA 1SH4A 1JEXA 1U9UA 1X3XA 3NERA 4X8YA 1M59A 1LQXA 1SOXA 1ES1A 1I87A 3X33A 1M2IA 4B8NA 1IB7A 1AQAA
chains in the Genus database with same CATH superfamily
2OZ0A 1CXYA 1J03A 1B5MA 1AWPA 1BFXA 1EUEA 1F03A 1IETA 1LR6A 1HKOA 1M20A 1B5AA 1I8CA 1LJ0A 1LCOA 1MNYA 2AXXA 1M2MA 3MUSA 1J0QA 3X32A 1I5UA 1NX7A 2I96A 1AW3A 1BLVA 2IBJA 3KS0A 2I89A 3OZZB 3LF5A 3X35A 1U9MA 1MJ4A 1LTDA 1DO9A 1F04A 1AXXA 1EHBA 4HINA 1KBIA 2M33A 1FCBA 3X34A 1IEUA 4HILA 2KEOA 1B5BA 1LDCA 1ICCA 1CYOA 1T0GA 1SH4A 1JEXA 1U9UA 1X3XA 3NERA 4X8YA 1M59A 1LQXA 1SOXA 1ES1A 1I87A 3X33A 1M2IA 4B8NA 1IB7A 1AQAA
chains in the Genus database with same CATH topology
2OZ0A 1CXYA 1J03A 1B5MA 1AWPA 1BFXA 1EUEA 1F03A 1IETA 1LR6A 1HKOA 1M20A 1B5AA 1I8CA 1LJ0A 1LCOA 1MNYA 2AXXA 1M2MA 3MUSA 1J0QA 3X32A 1I5UA 1NX7A 2I96A 1AW3A 1BLVA 2IBJA 3KS0A 2I89A 3OZZB 3LF5A 3X35A 1U9MA 1MJ4A 1LTDA 1DO9A 1F04A 1AXXA 1EHBA 4HINA 1KBIA 2M33A 1FCBA 3X34A 1IEUA 4HILA 2KEOA 1B5BA 1LDCA 1ICCA 1CYOA 1T0GA 1SH4A 1JEXA 1U9UA 1X3XA 3NERA 4X8YA 1M59A 1LQXA 1SOXA 1ES1A 1I87A 3X33A 1M2IA 4B8NA 1IB7A 1AQAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OZ0 A;  1CXY A;  1J03 A;  1B5M A;  1AWP A;  1BFX A;  1EUE A;  1F03 A;  1IET A;  1LR6 A;  1HKO A;  1M20 A;  1B5A A;  1I8C A;  1LJ0 A;  1LCO A;  1MNY A;  2AXX A;  1M2M A;  3MUS A;  1J0Q A;  3X32 A;  1I5U A;  1NX7 A;  2I96 A;  1AW3 A;  1BLV A;  2IBJ A;  3KS0 A;  2I89 A;  3OZZ B;  3LF5 A;  3X35 A;  1U9M A;  1MJ4 A;  1LTD A;  1DO9 A;  1F04 A;  1AXX A;  1EHB A;  4HIN A;  1KBI A;  2M33 A;  1FCB A;  3X34 A;  1IEU A;  4HIL A;  2KEO A;  1B5B A;  1LDC A;  1ICC A;  1CYO A;  1T0G A;  1SH4 A;  1JEX A;  1U9U A;  1X3X A;  3NER A;  4X8Y A;  1M59 A;  1LQX A;  1SOX A;  1ES1 A;  1I87 A;  3X33 A;  1M2I A;  4B8N A;  1IB7 A;  1AQA A; 
#chains in the Genus database with same CATH topology
 2OZ0 A;  1CXY A;  1J03 A;  1B5M A;  1AWP A;  1BFX A;  1EUE A;  1F03 A;  1IET A;  1LR6 A;  1HKO A;  1M20 A;  1B5A A;  1I8C A;  1LJ0 A;  1LCO A;  1MNY A;  2AXX A;  1M2M A;  3MUS A;  1J0Q A;  3X32 A;  1I5U A;  1NX7 A;  2I96 A;  1AW3 A;  1BLV A;  2IBJ A;  3KS0 A;  2I89 A;  3OZZ B;  3LF5 A;  3X35 A;  1U9M A;  1MJ4 A;  1LTD A;  1DO9 A;  1F04 A;  1AXX A;  1EHB A;  4HIN A;  1KBI A;  2M33 A;  1FCB A;  3X34 A;  1IEU A;  4HIL A;  2KEO A;  1B5B A;  1LDC A;  1ICC A;  1CYO A;  1T0G A;  1SH4 A;  1JEX A;  1U9U A;  1X3X A;  3NER A;  4X8Y A;  1M59 A;  1LQX A;  1SOX A;  1ES1 A;  1I87 A;  3X33 A;  1M2I A;  4B8N A;  1IB7 A;  1AQA A; 
#chains in the Genus database with same CATH homology
 2OZ0 A;  1CXY A;  1J03 A;  1B5M A;  1AWP A;  1BFX A;  1EUE A;  1F03 A;  1IET A;  1LR6 A;  1HKO A;  1M20 A;  1B5A A;  1I8C A;  1LJ0 A;  1LCO A;  1MNY A;  2AXX A;  1M2M A;  3MUS A;  1J0Q A;  3X32 A;  1I5U A;  1NX7 A;  2I96 A;  1AW3 A;  1BLV A;  2IBJ A;  3KS0 A;  2I89 A;  3OZZ B;  3LF5 A;  3X35 A;  1U9M A;  1MJ4 A;  1LTD A;  1DO9 A;  1F04 A;  1AXX A;  1EHB A;  4HIN A;  1KBI A;  2M33 A;  1FCB A;  3X34 A;  1IEU A;  4HIL A;  2KEO A;  1B5B A;  1LDC A;  1ICC A;  1CYO A;  1T0G A;  1SH4 A;  1JEX A;  1U9U A;  1X3X A;  3NER A;  4X8Y A;  1M59 A;  1LQX A;  1SOX A;  1ES1 A;  1I87 A;  3X33 A;  1M2I A;  4B8N A;  1IB7 A;  1AQA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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