1F0OA

Pvuii endonuclease/cognate dna complex (glutaraldehyde-crosslinked crystal) at ph 7.5 with two calcium ions at each active site
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
156
structure length
154
Chain Sequence
SHPDLNKLLELWPHIQEYQDLALKHGINDIFQDNGGKLLQVLLITGLTVLPEGNDAVDNAGQEYELKSINIDLTKGFSTHHHMNPVIIAKYRQVPWIFAIYRGIAIEAIYRLEPKDLEFYYDKWERKWYSDGHKDINNPKIPVKYVMEHGTKIY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title PvuII endonuclease contains two calcium ions in active sites.
pubmed doi rcsb
molecule tags Hydrolase/dna
source organism Proteus vulgaris
molecule keywords (5'-D(*TP*GP*AP*CP*CP*AP*GP*CP*TP*GP*GP*TP*C-3')
total genus 47
structure length 154
sequence length 156
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2000-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09225 Endonuc-PvuII Restriction endonuclease PvuII
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.210.10 Alpha Beta 3-Layer(aba) Sandwich PvuII Endonuclease; Chain A PVUII Endonuclease, subunit A 1f0oA00
1EYUA 1F0OA 1K0ZA 3PVIA 1H56A 1NI0A 1PVUA 2PVIA 1PVIA
chains in the Genus database with same CATH superfamily
2OA9A 1EYUA 1F0OA 1K0ZA 3IMBA 1H56A 3PVIA 2Q10A 1NI0A 1PVUA 2PVIA 2ODIA 2OAAA 4ESJA 1PVIA 2ODHA 4KYWA
chains in the Genus database with same CATH topology
1EYUA 1F0OA 1K0ZA 3PVIA 1H56A 1NI0A 1PVUA 2PVIA 1PVIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EYU A;  1F0O A;  1K0Z A;  3PVI A;  1H56 A;  1NI0 A;  1PVU A;  2PVI A;  1PVI A; 
#chains in the Genus database with same CATH topology
 2OA9 A;  1EYU A;  1F0O A;  1K0Z A;  3IMB A;  1H56 A;  3PVI A;  2Q10 A;  1NI0 A;  1PVU A;  2PVI A;  2ODI A;  2OAA A;  4ESJ A;  1PVI A;  2ODH A;  4KYW A; 
#chains in the Genus database with same CATH homology
 1EYU A;  1F0O A;  1K0Z A;  3PVI A;  1H56 A;  1NI0 A;  1PVU A;  2PVI A;  1PVI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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