1F5VA

Structure and site-directed mutagenesis of a flavoprotein from escherichia coli that reduces nitrocompounds. alteration of pyridine nucleotide binding by a single amino acid substitution
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
240
structure length
240
Chain Sequence
MTPTIELICGHRSIRHFTDEPISEAQREAIINSARATSSSSFLQCSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPDLKPRLPASILVHENSYQPLDKGALAQYDEQLAEYYLTRGSNNRRDTWSDHIRRTIIKESRPFILDYLHKQGWATR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords OXYGEN-INSENSITIVE NADPH NITROREDUCTASE
publication title Structure and site-directed mutagenesis of a flavoprotein from Escherichia coli that reduces nitrocompounds: alteration of pyridine nucleotide binding by a single amino acid substitution.
pubmed doi rcsb
source organism Escherichia coli
total genus 77
structure length 240
sequence length 240
chains with identical sequence B
ec nomenclature ec 1.6.99.6: Transferred entry: 1.6.5.10.
pdb deposition date 2000-06-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 1f5vA00
2I7HA 3HZNA 2YMVA 3TO0A 3KWKA 1YLUA 3E39A 5J6CA 3GFAA 4URPA 5KO8A 3QDLA 4QLXA 4DN2A 3E10A 1VFRA 1ICVA 2FREA 4TTCA 3H4OA 3HOIA 3EOFA 3PXVA 1IDTA 1KQCA 2WZWA 4G8SA 1YKIA 1ICRA 1OONA 3N2SA 4BN6A 3M5KA 3GAGA 1VKWA 2ISKA 3BM1A 1ICUA 3X21A 2HAYA 2ISJA 4BN8A 5HDJA 1YLRA 4BN9A 2WZVA 3OF4A 3GR3A 4XOQA 4XOMA 1ZCHA 4EO3A 5KRDA 3GFDA 2IFAA 4TTBA 3X22A 1OO6A 1OOQA 3K6HA 5HEIA 1V5YA 2H0UA 3EO7A 3KOQA 3EK3A 3EO8A 4BNBA 1V5ZA 3TNZA 1NECA 1F5VA 2ISLA 1KQDA 3GE5A 1KQBA 1YWQA 3GE6A 3BM2A 1BKJA 3GB5A 3HJ9A 1DS7A 2BKJA 4QLYA 3GBHA 1NOXA 3GH8A 2WQFA 2R01A 3G14A 4BN7A 5KO7A 1OO5A 3BEMA 2B67A 4XOOA
chains in the Genus database with same CATH superfamily
2I7HA 3HZNA 2YMVA 3TO0A 3KWKA 1YLUA 3E39A 5J6CA 3GFAA 4URPA 5KO8A 3QDLA 4QLXA 4DN2A 3E10A 1VFRA 1ICVA 2FREA 4TTCA 3H4OA 3HOIA 3EOFA 3PXVA 1IDTA 1KQCA 2WZWA 4G8SA 1YKIA 1ICRA 1OONA 3N2SA 1J6RA 4BN6A 3M5KA 3GAGA 1VKWA 2ISKA 3BM1A 1ICUA 3X21A 2HAYA 2ISJA 4BN8A 5HDJA 1YLRA 4BN9A 2WZVA 3OF4A 3GR3A 4XOQA 4XOMA 1ZCHA 4EO3A 5KRDA 3GFDA 2IFAA 4TTBA 3X22A 1OO6A 1OOQA 3K6HA 5HEIA 1V5YA 2H0UA 3EO7A 3KOQA 3EK3A 3EO8A 4BNBA 1V5ZA 3TNZA 1NECA 1F5VA 2ISLA 1KQDA 3GE5A 1KQBA 1YWQA 3GE6A 3BM2A 1BKJA 3GB5A 3HJ9A 1DS7A 2BKJA 4QLYA 3GBHA 1NOXA 3GH8A 2WQFA 2R01A 3G14A 4BN7A 5KO7A 1OO5A 3BEMA 2B67A 4XOOA
chains in the Genus database with same CATH topology
2I7HA 3HZNA 2YMVA 3TO0A 3KWKA 1YLUA 3E39A 5J6CA 3GFAA 4URPA 5KO8A 3QDLA 4QLXA 4DN2A 3E10A 1VFRA 1ICVA 2FREA 4TTCA 3H4OA 3HOIA 3EOFA 3PXVA 1IDTA 1KQCA 2WZWA 4G8SA 1YKIA 1ICRA 1OONA 3N2SA 1J6RA 4BN6A 3M5KA 3GAGA 1VKWA 2ISKA 3BM1A 1ICUA 3X21A 2HAYA 2ISJA 4BN8A 5HDJA 1YLRA 4BN9A 2WZVA 3OF4A 3GR3A 4XOQA 4XOMA 1ZCHA 4EO3A 5KRDA 3GFDA 2IFAA 4TTBA 3X22A 1OO6A 1OOQA 3K6HA 5HEIA 1V5YA 2H0UA 3EO7A 3KOQA 3EK3A 3EO8A 4BNBA 1V5ZA 3TNZA 1NECA 1F5VA 2ISLA 1KQDA 3GE5A 1KQBA 1YWQA 3GE6A 3BM2A 1BKJA 3GB5A 3HJ9A 1DS7A 2BKJA 4QLYA 3GBHA 1NOXA 3GH8A 2WQFA 2R01A 3G14A 4BN7A 5KO7A 1OO5A 3BEMA 2B67A 4XOOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2I7H A;  3HZN A;  2YMV A;  3TO0 A;  3KWK A;  1YLU A;  3E39 A;  5J6C A;  3GFA A;  4URP A;  5KO8 A;  3QDL A;  4QLX A;  4DN2 A;  3E10 A;  1VFR A;  1ICV A;  2FRE A;  4TTC A;  3H4O A;  3HOI A;  3EOF A;  3PXV A;  1IDT A;  1KQC A;  2WZW A;  4G8S A;  1YKI A;  1ICR A;  1OON A;  3N2S A;  4BN6 A;  3M5K A;  3GAG A;  1VKW A;  2ISK A;  3BM1 A;  1ICU A;  3X21 A;  2HAY A;  2ISJ A;  4BN8 A;  5HDJ A;  1YLR A;  4BN9 A;  2WZV A;  3OF4 A;  3GR3 A;  4XOQ A;  4XOM A;  1ZCH A;  4EO3 A;  5KRD A;  3GFD A;  2IFA A;  4TTB A;  3X22 A;  1OO6 A;  1OOQ A;  3K6H A;  5HEI A;  1V5Y A;  2H0U A;  3EO7 A;  3KOQ A;  3EK3 A;  3EO8 A;  4BNB A;  1V5Z A;  3TNZ A;  1NEC A;  1F5V A;  2ISL A;  1KQD A;  3GE5 A;  1KQB A;  1YWQ A;  3GE6 A;  3BM2 A;  1BKJ A;  3GB5 A;  3HJ9 A;  1DS7 A;  2BKJ A;  4QLY A;  3GBH A;  1NOX A;  3GH8 A;  2WQF A;  2R01 A;  3G14 A;  4BN7 A;  5KO7 A;  1OO5 A;  3BEM A;  2B67 A;  4XOO A; 
#chains in the Genus database with same CATH topology
 2I7H A;  3HZN A;  2YMV A;  3TO0 A;  3KWK A;  1YLU A;  3E39 A;  5J6C A;  3GFA A;  4URP A;  5KO8 A;  3QDL A;  4QLX A;  4DN2 A;  3E10 A;  1VFR A;  1ICV A;  2FRE A;  4TTC A;  3H4O A;  3HOI A;  3EOF A;  3PXV A;  1IDT A;  1KQC A;  2WZW A;  4G8S A;  1YKI A;  1ICR A;  1OON A;  3N2S A;  1J6R A;  4BN6 A;  3M5K A;  3GAG A;  1VKW A;  2ISK A;  3BM1 A;  1ICU A;  3X21 A;  2HAY A;  2ISJ A;  4BN8 A;  5HDJ A;  1YLR A;  4BN9 A;  2WZV A;  3OF4 A;  3GR3 A;  4XOQ A;  4XOM A;  1ZCH A;  4EO3 A;  5KRD A;  3GFD A;  2IFA A;  4TTB A;  3X22 A;  1OO6 A;  1OOQ A;  3K6H A;  5HEI A;  1V5Y A;  2H0U A;  3EO7 A;  3KOQ A;  3EK3 A;  3EO8 A;  4BNB A;  1V5Z A;  3TNZ A;  1NEC A;  1F5V A;  2ISL A;  1KQD A;  3GE5 A;  1KQB A;  1YWQ A;  3GE6 A;  3BM2 A;  1BKJ A;  3GB5 A;  3HJ9 A;  1DS7 A;  2BKJ A;  4QLY A;  3GBH A;  1NOX A;  3GH8 A;  2WQF A;  2R01 A;  3G14 A;  4BN7 A;  5KO7 A;  1OO5 A;  3BEM A;  2B67 A;  4XOO A; 
#chains in the Genus database with same CATH homology
 2I7H A;  3HZN A;  2YMV A;  3TO0 A;  3KWK A;  1YLU A;  3E39 A;  5J6C A;  3GFA A;  4URP A;  5KO8 A;  3QDL A;  4QLX A;  4DN2 A;  3E10 A;  1VFR A;  1ICV A;  2FRE A;  4TTC A;  3H4O A;  3HOI A;  3EOF A;  3PXV A;  1IDT A;  1KQC A;  2WZW A;  4G8S A;  1YKI A;  1ICR A;  1OON A;  3N2S A;  1J6R A;  4BN6 A;  3M5K A;  3GAG A;  1VKW A;  2ISK A;  3BM1 A;  1ICU A;  3X21 A;  2HAY A;  2ISJ A;  4BN8 A;  5HDJ A;  1YLR A;  4BN9 A;  2WZV A;  3OF4 A;  3GR3 A;  4XOQ A;  4XOM A;  1ZCH A;  4EO3 A;  5KRD A;  3GFD A;  2IFA A;  4TTB A;  3X22 A;  1OO6 A;  1OOQ A;  3K6H A;  5HEI A;  1V5Y A;  2H0U A;  3EO7 A;  3KOQ A;  3EK3 A;  3EO8 A;  4BNB A;  1V5Z A;  3TNZ A;  1NEC A;  1F5V A;  2ISL A;  1KQD A;  3GE5 A;  1KQB A;  1YWQ A;  3GE6 A;  3BM2 A;  1BKJ A;  3GB5 A;  3HJ9 A;  1DS7 A;  2BKJ A;  4QLY A;  3GBH A;  1NOX A;  3GH8 A;  2WQF A;  2R01 A;  3G14 A;  4BN7 A;  5KO7 A;  1OO5 A;  3BEM A;  2B67 A;  4XOO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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