1F94A

The 0.97 resolution structure of bucandin, a novel toxin isolated from the malayan krait
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
63
structure length
63
Chain Sequence
MECYRCGVSGCHLKITCSAEETFCYKWLNKISNERWLGCAKTCTEIDTWNVYNKCCTTNLCNT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords BUCANDIN
publication title The atomic resolution structure of bucandin, a novel toxin isolated from the Malayan krait, determined by direct methods.
pubmed doi rcsb
total genus 15
structure length 63
sequence length 63
ec nomenclature
pdb deposition date 2000-07-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1f94A00
1ABTA 2QJBC 4OM4A 1TXAA 1HAAA 1QKDA 2MJ0A 6EBXA 1QM7A 1CB9A 1CXOA 2FD6U 2GOOB 2H7ZA 2HLRA 1L4WA 1M9ZA 2J8BA 2HLQA 1CDQA 1KU6B 1CODA 1JBDA 1KTZB 4AEAA 3EBXA 4LFTA 1TFSA 2MFAA 4BIKB 1NYSA 1ZADA 2UX2A 2CDXA 4DO8A 1FRAA 2MJ4A 1S4YA 1I02A 2QC1A 3VTSA 2LCRA 1CCQA 2H64C 1NTNA 2H7ZB 1ES7B 1BXPA 1CTXA 2ERAA 2H62D 2BHIA 2JVEA 1HAJA 2I9BE 1KBAA 1B41B 5DZ5A 2QJ9C 3KFDI 1TGXA 1V6PA 1VB0A 4FAOE 1NEAA 1REWC 4FAOC 2H64B 1CDSA 1UG4A 1IDLA 4P7UA 1NXBA 2K3GA 3HH7A 1HOYA 1ERGA 1IDGA 4OM5A 1CDTA 1LX5B 1TXBA 1MAHF 3NDSA 1NORA 2MHYA 2CRSA 3BT2U 1QKEA 3U74U 1KL8A 1CREA 1COEA 1RGJA 1ONJA 1IK8A 2MUPA 2H8UA 5IMTD 1FSSB 1XT3A 2L5SA 2UWRA 1KC4A 2PJYC 1IKCA 1IDHA 1HC9A 1F8UB 2L03A 3NH7A 3ERAA 4BDTB 1IJCA 2CRTA 3U73U 5EBXA 3NEQA 4EY8B 1MR6A 1CDRA 3PLCA 4UY2C 1KBTA 1RL5A 5DU1A 4IYEA 1IDIA 1KS6A 3BT1U 1FSCA 2PJYB 4RUDA 2BTXA 1KFHA 1FASA 3QB4B 2H62C 1NYUA 1LJZA 1CXNA 2H5FA 1IQ9A 1HC9B 2MUOA 4ZQYA 5DO6A 2X8BB 4XJJA 5IMYC 1CHVS 2CCXA 1H0JA 2CTXA 4HQPF 3LAQU 1DRSA 3KFDE 2MJYA 1ERAA 1KXIA 3FEVA 1LXGA 1KBSA 2LA1A 1BTEA 1F94A 1JE9A 2VLWA 1FFJA 1CRFA 1YWHA 1CVOA 1LSIA 1W6BA 1JGKA 2NBTA 1G6MA 1NTXA 1LXHA 2OFSA 2GOOC 2ABXA 3EVSC 1PLOA 2N99A 2JQPA 2QJAC 1FF4A 4QTIU
chains in the Genus database with same CATH superfamily
1ABTA 2QJBC 4OM4A 1TXAA 1HAAA 1QKDA 2MJ0A 6EBXA 1QM7A 1CB9A 1CXOA 2FD6U 2GOOB 2H7ZA 2HLRA 1L4WA 1M9ZA 2J8BA 2HLQA 1CDQA 1KU6B 1CODA 1JBDA 1KTZB 4AEAA 3EBXA 4LFTA 1TFSA 2MFAA 4BIKB 1NYSA 1ZADA 2UX2A 2CDXA 4DO8A 1FRAA 2MJ4A 1S4YA 1I02A 2QC1A 3VTSA 2LCRA 1CCQA 2H64C 1NTNA 2H7ZB 1ES7B 1BXPA 1CTXA 2ERAA 2H62D 2BHIA 2JVEA 1HAJA 2I9BE 1KBAA 1B41B 5DZ5A 2QJ9C 3KFDI 1TGXA 1V6PA 1VB0A 4FAOE 1NEAA 1REWC 4FAOC 2H64B 1CDSA 1UG4A 1IDLA 4P7UA 1NXBA 2K3GA 3HH7A 1HOYA 1ERGA 1IDGA 4OM5A 1CDTA 1LX5B 1TXBA 1MAHF 3NDSA 1NORA 2MHYA 2CRSA 3BT2U 1QKEA 4KSNA 3U74U 1KL8A 1CREA 1COEA 1RGJA 1ONJA 1IK8A 2MUPA 2H8UA 5IMTD 1FSSB 1XT3A 2L5SA 2UWRA 1KC4A 2PJYC 1IKCA 1IDHA 1HC9A 1F8UB 2L03A 3NH7A 3ERAA 4BDTB 1IJCA 2CRTA 3U73U 5EBXA 3NEQA 4EY8B 1MR6A 1CDRA 3PLCA 4UY2C 1KBTA 1RL5A 5DU1A 4IYEA 1IDIA 1KS6A 3BT1U 1FSCA 2PJYB 4RUDA 2BTXA 1KFHA 1FASA 3QB4B 2H62C 1NYUA 1LJZA 1CXNA 2H5FA 1IQ9A 1HC9B 2MUOA 4ZQYA 5DO6A 2X8BB 4XJJA 5IMYC 1CHVS 2CCXA 1H0JA 2CTXA 4HQPF 3LAQU 1DRSA 3KFDE 2MJYA 1ERAA 1KXIA 3FEVA 1LXGA 1KBSA 2LA1A 1BTEA 1F94A 1JE9A 2VLWA 1FFJA 1CRFA 1YWHA 1CVOA 1LSIA 1W6BA 1JGKA 2NBTA 1G6MA 1NTXA 1LXHA 2OFSA 2GOOC 2ABXA 3EVSC 1PLOA 2N99A 2JQPA 2QJAC 1FF4A 4QTIU
chains in the Genus database with same CATH topology
1ABTA 2QJBC 4OM4A 1TXAA 1HAAA 1QKDA 2MJ0A 6EBXA 1QM7A 1CB9A 1CXOA 2FD6U 2GOOB 2H7ZA 2HLRA 1L4WA 1M9ZA 2J8BA 2HLQA 1CDQA 1KU6B 1CODA 1JBDA 1KTZB 4AEAA 3EBXA 4LFTA 1TFSA 2MFAA 4BIKB 1NYSA 1ZADA 2UX2A 2CDXA 4DO8A 1FRAA 2MJ4A 1S4YA 1I02A 2QC1A 3VTSA 2LCRA 1CCQA 2H64C 1NTNA 2H7ZB 1ES7B 1BXPA 1CTXA 2ERAA 2H62D 2BHIA 2JVEA 1HAJA 2I9BE 1KBAA 1B41B 5DZ5A 2QJ9C 3KFDI 1TGXA 1V6PA 1VB0A 4FAOE 1NEAA 1REWC 4FAOC 2H64B 1CDSA 1UG4A 1IDLA 4P7UA 1NXBA 2K3GA 3HH7A 1HOYA 1ERGA 1IDGA 4OM5A 1CDTA 1LX5B 1TXBA 1MAHF 3NDSA 1NORA 2MHYA 2CRSA 3BT2U 1QKEA 4KSNA 3U74U 1KL8A 1CREA 1COEA 1RGJA 1ONJA 1IK8A 2MUPA 2H8UA 5IMTD 1FSSB 1XT3A 2L5SA 2UWRA 1KC4A 2PJYC 1IKCA 1IDHA 1HC9A 1F8UB 2L03A 3NH7A 3ERAA 4BDTB 1IJCA 2CRTA 3U73U 5EBXA 3NEQA 4EY8B 1MR6A 1CDRA 3PLCA 4UY2C 1KBTA 1RL5A 5DU1A 4IYEA 1IDIA 1KS6A 3BT1U 1FSCA 2PJYB 4RUDA 2BTXA 1KFHA 1FASA 3QB4B 2H62C 1NYUA 1LJZA 1CXNA 2H5FA 1IQ9A 1HC9B 2MUOA 4ZQYA 5DO6A 2X8BB 4XJJA 5IMYC 1CHVS 2CCXA 1H0JA 2CTXA 4HQPF 3LAQU 1DRSA 3KFDE 2MJYA 1ERAA 1KXIA 3FEVA 1LXGA 1KBSA 2LA1A 1BTEA 1F94A 1JE9A 2VLWA 1FFJA 1CRFA 1YWHA 1CVOA 1LSIA 1W6BA 1JGKA 2NBTA 1G6MA 1NTXA 1LXHA 2OFSA 2GOOC 2ABXA 3EVSC 1PLOA 2N99A 2JQPA 2QJAC 1FF4A 4QTIU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ABT A;  2QJB C;  4OM4 A;  1TXA A;  1HAA A;  1QKD A;  2MJ0 A;  6EBX A;  1QM7 A;  1CB9 A;  1CXO A;  2FD6 U;  2GOO B;  2H7Z A;  2HLR A;  1L4W A;  1M9Z A;  2J8B A;  2HLQ A;  1CDQ A;  1KU6 B;  1COD A;  1JBD A;  1KTZ B;  4AEA A;  3EBX A;  4LFT A;  1TFS A;  2MFA A;  4BIK B;  1NYS A;  1ZAD A;  2UX2 A;  2CDX A;  4DO8 A;  1FRA A;  2MJ4 A;  1S4Y A;  1I02 A;  2QC1 A;  3VTS A;  2LCR A;  1CCQ A;  2H64 C;  1NTN A;  2H7Z B;  1ES7 B;  1BXP A;  1CTX A;  2ERA A;  2H62 D;  2BHI A;  2JVE A;  1HAJ A;  2I9B E;  1KBA A;  1B41 B;  5DZ5 A;  2QJ9 C;  3KFD I;  1TGX A;  1V6P A;  1VB0 A;  4FAO E;  1NEA A;  1REW C;  4FAO C;  2H64 B;  1CDS A;  1UG4 A;  1IDL A;  4P7U A;  1NXB A;  2K3G A;  3HH7 A;  1HOY A;  1ERG A;  1IDG A;  4OM5 A;  1CDT A;  1LX5 B;  1TXB A;  1MAH F;  3NDS A;  1NOR A;  2MHY A;  2CRS A;  3BT2 U;  1QKE A;  3U74 U;  1KL8 A;  1CRE A;  1COE A;  1RGJ A;  1ONJ A;  1IK8 A;  2MUP A;  2H8U A;  5IMT D;  1FSS B;  1XT3 A;  2L5S A;  2UWR A;  1KC4 A;  2PJY C;  1IKC A;  1IDH A;  1HC9 A;  1F8U B;  2L03 A;  3NH7 A;  3ERA A;  4BDT B;  1IJC A;  2CRT A;  3U73 U;  5EBX A;  3NEQ A;  4EY8 B;  1MR6 A;  1CDR A;  3PLC A;  4UY2 C;  1KBT A;  1RL5 A;  5DU1 A;  4IYE A;  1IDI A;  1KS6 A;  3BT1 U;  1FSC A;  2PJY B;  4RUD A;  2BTX A;  1KFH A;  1FAS A;  3QB4 B;  2H62 C;  1NYU A;  1LJZ A;  1CXN A;  2H5F A;  1IQ9 A;  1HC9 B;  2MUO A;  4ZQY A;  5DO6 A;  2X8B B;  4XJJ A;  5IMY C;  1CHV S;  2CCX A;  1H0J A;  2CTX A;  4HQP F;  3LAQ U;  1DRS A;  3KFD E;  2MJY A;  1ERA A;  1KXI A;  3FEV A;  1LXG A;  1KBS A;  2LA1 A;  1BTE A;  1F94 A;  1JE9 A;  2VLW A;  1FFJ A;  1CRF A;  1YWH A;  1CVO A;  1LSI A;  1W6B A;  1JGK A;  2NBT A;  1G6M A;  1NTX A;  1LXH A;  2OFS A;  2GOO C;  2ABX A;  3EVS C;  1PLO A;  2N99 A;  2JQP A;  2QJA C;  1FF4 A;  4QTI U; 
#chains in the Genus database with same CATH topology
 1ABT A;  2QJB C;  4OM4 A;  1TXA A;  1HAA A;  1QKD A;  2MJ0 A;  6EBX A;  1QM7 A;  1CB9 A;  1CXO A;  2FD6 U;  2GOO B;  2H7Z A;  2HLR A;  1L4W A;  1M9Z A;  2J8B A;  2HLQ A;  1CDQ A;  1KU6 B;  1COD A;  1JBD A;  1KTZ B;  4AEA A;  3EBX A;  4LFT A;  1TFS A;  2MFA A;  4BIK B;  1NYS A;  1ZAD A;  2UX2 A;  2CDX A;  4DO8 A;  1FRA A;  2MJ4 A;  1S4Y A;  1I02 A;  2QC1 A;  3VTS A;  2LCR A;  1CCQ A;  2H64 C;  1NTN A;  2H7Z B;  1ES7 B;  1BXP A;  1CTX A;  2ERA A;  2H62 D;  2BHI A;  2JVE A;  1HAJ A;  2I9B E;  1KBA A;  1B41 B;  5DZ5 A;  2QJ9 C;  3KFD I;  1TGX A;  1V6P A;  1VB0 A;  4FAO E;  1NEA A;  1REW C;  4FAO C;  2H64 B;  1CDS A;  1UG4 A;  1IDL A;  4P7U A;  1NXB A;  2K3G A;  3HH7 A;  1HOY A;  1ERG A;  1IDG A;  4OM5 A;  1CDT A;  1LX5 B;  1TXB A;  1MAH F;  3NDS A;  1NOR A;  2MHY A;  2CRS A;  3BT2 U;  1QKE A;  4KSN A;  3U74 U;  1KL8 A;  1CRE A;  1COE A;  1RGJ A;  1ONJ A;  1IK8 A;  2MUP A;  2H8U A;  5IMT D;  1FSS B;  1XT3 A;  2L5S A;  2UWR A;  1KC4 A;  2PJY C;  1IKC A;  1IDH A;  1HC9 A;  1F8U B;  2L03 A;  3NH7 A;  3ERA A;  4BDT B;  1IJC A;  2CRT A;  3U73 U;  5EBX A;  3NEQ A;  4EY8 B;  1MR6 A;  1CDR A;  3PLC A;  4UY2 C;  1KBT A;  1RL5 A;  5DU1 A;  4IYE A;  1IDI A;  1KS6 A;  3BT1 U;  1FSC A;  2PJY B;  4RUD A;  2BTX A;  1KFH A;  1FAS A;  3QB4 B;  2H62 C;  1NYU A;  1LJZ A;  1CXN A;  2H5F A;  1IQ9 A;  1HC9 B;  2MUO A;  4ZQY A;  5DO6 A;  2X8B B;  4XJJ A;  5IMY C;  1CHV S;  2CCX A;  1H0J A;  2CTX A;  4HQP F;  3LAQ U;  1DRS A;  3KFD E;  2MJY A;  1ERA A;  1KXI A;  3FEV A;  1LXG A;  1KBS A;  2LA1 A;  1BTE A;  1F94 A;  1JE9 A;  2VLW A;  1FFJ A;  1CRF A;  1YWH A;  1CVO A;  1LSI A;  1W6B A;  1JGK A;  2NBT A;  1G6M A;  1NTX A;  1LXH A;  2OFS A;  2GOO C;  2ABX A;  3EVS C;  1PLO A;  2N99 A;  2JQP A;  2QJA C;  1FF4 A;  4QTI U; 
#chains in the Genus database with same CATH homology
 1ABT A;  2QJB C;  4OM4 A;  1TXA A;  1HAA A;  1QKD A;  2MJ0 A;  6EBX A;  1QM7 A;  1CB9 A;  1CXO A;  2FD6 U;  2GOO B;  2H7Z A;  2HLR A;  1L4W A;  1M9Z A;  2J8B A;  2HLQ A;  1CDQ A;  1KU6 B;  1COD A;  1JBD A;  1KTZ B;  4AEA A;  3EBX A;  4LFT A;  1TFS A;  2MFA A;  4BIK B;  1NYS A;  1ZAD A;  2UX2 A;  2CDX A;  4DO8 A;  1FRA A;  2MJ4 A;  1S4Y A;  1I02 A;  2QC1 A;  3VTS A;  2LCR A;  1CCQ A;  2H64 C;  1NTN A;  2H7Z B;  1ES7 B;  1BXP A;  1CTX A;  2ERA A;  2H62 D;  2BHI A;  2JVE A;  1HAJ A;  2I9B E;  1KBA A;  1B41 B;  5DZ5 A;  2QJ9 C;  3KFD I;  1TGX A;  1V6P A;  1VB0 A;  4FAO E;  1NEA A;  1REW C;  4FAO C;  2H64 B;  1CDS A;  1UG4 A;  1IDL A;  4P7U A;  1NXB A;  2K3G A;  3HH7 A;  1HOY A;  1ERG A;  1IDG A;  4OM5 A;  1CDT A;  1LX5 B;  1TXB A;  1MAH F;  3NDS A;  1NOR A;  2MHY A;  2CRS A;  3BT2 U;  1QKE A;  4KSN A;  3U74 U;  1KL8 A;  1CRE A;  1COE A;  1RGJ A;  1ONJ A;  1IK8 A;  2MUP A;  2H8U A;  5IMT D;  1FSS B;  1XT3 A;  2L5S A;  2UWR A;  1KC4 A;  2PJY C;  1IKC A;  1IDH A;  1HC9 A;  1F8U B;  2L03 A;  3NH7 A;  3ERA A;  4BDT B;  1IJC A;  2CRT A;  3U73 U;  5EBX A;  3NEQ A;  4EY8 B;  1MR6 A;  1CDR A;  3PLC A;  4UY2 C;  1KBT A;  1RL5 A;  5DU1 A;  4IYE A;  1IDI A;  1KS6 A;  3BT1 U;  1FSC A;  2PJY B;  4RUD A;  2BTX A;  1KFH A;  1FAS A;  3QB4 B;  2H62 C;  1NYU A;  1LJZ A;  1CXN A;  2H5F A;  1IQ9 A;  1HC9 B;  2MUO A;  4ZQY A;  5DO6 A;  2X8B B;  4XJJ A;  5IMY C;  1CHV S;  2CCX A;  1H0J A;  2CTX A;  4HQP F;  3LAQ U;  1DRS A;  3KFD E;  2MJY A;  1ERA A;  1KXI A;  3FEV A;  1LXG A;  1KBS A;  2LA1 A;  1BTE A;  1F94 A;  1JE9 A;  2VLW A;  1FFJ A;  1CRF A;  1YWH A;  1CVO A;  1LSI A;  1W6B A;  1JGK A;  2NBT A;  1G6M A;  1NTX A;  1LXH A;  2OFS A;  2GOO C;  2ABX A;  3EVS C;  1PLO A;  2N99 A;  2JQP A;  2QJA C;  1FF4 A;  4QTI U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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