1FEUA

Crystal structure of ribosomal protein tl5, one of the ctc family proteins, complexed with a fragment of 5s rrna.
Total Genus 39
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
185
structure length
185
Chain Sequence
MEYRLKAYYREGEKPSALRRAGKLPGLMYNRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAVVPPEDVEKLAE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure of ribosomal protein TL5 complexed with RNA provides new insights into the CTC family of stress proteins.
pubmed doi rcsb
molecule keywords 19 NT FRAGMENT OF 5S RRNA
source organism Thermus thermophilus
molecule tags Ribosome
total genus 39
structure length 185
sequence length 185
chains with identical sequence D
ec nomenclature
pdb deposition date 2000-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01386 Ribosomal_L25p Ribosomal L25p family
A PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 1feuA01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 1feuA02
4H3SA 4WFNS 5IZNA 3PIOS 5GAGW 4JXZA 1DFUP 1B75A 5GAEW 3DLLS 5DM6S 4IO9S 1EUYA 3AIIA 1QTQA 5BNZA 2ZJPS 2RD2A 1NYLA 5GADW 3CF5S 3J7ZV 2ZJQS 5JVGS 5DM7S 5HL7S 4IOCS 1ZJWA 5JVHS 4U67S 4WCES 4JYZA 1GTRA 1QRSA 1O0BA 1QRUA 4IOAS 1D6KA 4P2BA 4UY88 1EUQA 4JXXA 5GAHW 1GTSA 1QRTA 2HZ7A 3PIPS 4WF9S 1FEUA 2ZJRS 1O0CA 1EXDA 4WFBS 4WFAS 2RE8A
chains in the Genus database with same CATH superfamily
3HOZC 4YG2A 5IZNA 2NVTC 2G6GA 4MEYA 4KMUA 4JXZA 1B75A 4LLGA 2A6EA 5DM6S 1EUYA 5IYBC 3GTJC 4XSXA 3S16C 3S2DC 4Y7NC 2Z0YA 1VHYA 3J7ZV 4L69A 4LK0A 5IP9C 5JVGS 2PMZD 4BY7C 5JVHS 4U67S 4WCES 2BE5A 2PICA 4KN4A 2L3UA 1K83C 1NXZA 4NOIA 1ZYRA 4OIPA 1I50C 2JA7C 1VHKA 2NVXC 1BDFA 2HZ7A 3S15C 4A3KC 3KW2A 2E2IC 4JK1A 4OINA 3W2VB 2ZJRS 2L5NA 4YFKA 2PJJA 2RE8A 3GTOC 4H3SA 4WFNS 3WODA 4G7OA 3S1MC 2NVQC 1TWGC 4OIRA 4YFXA 3AIIA 5C44C 3H0GC 2KXYA 4Q5SA 2ZJPS 2A6HA 5GADW 1IW7A 5DM7S 1SFOC 1I6HC 4IOCS 1ZJWA 2NVYC 5IYCC 2PPBA 4JYZA 1GTRA 2O5JA 2O5IA 3M3YC 4IOAS 4C3IC 4XLPA 4A93C 3DXJA 5D4DA 1UDXA 5IP7C 3S1QC 4JXXA 1YNNA 4BBRC 2GAEA 4Q4ZA 5GAHW 2JA5C 3GTGC 3PO3C 1Z85A 2KQ1A 4A3CC 3S1RC 2R93C 3PIPS 1O0CA 4AYBD 2R7ZC 5C3EC 1TWAC 3M4OC 3PIOS 1I3QC 2E2HC 1DFUP 4A3EC 2CW0A 4MQ9A 4IO9S 4A3LC 4H4KA 3EQLA 2WAQD 5BNZA 1HQMA 4A3JC 4X6AC 5C4XC 4C3HC 4BBSC 1NYLA 2PA8D 3CF5S 1I6VA 2ZJQS 3CQZC 4J3CA 2G5DA 5HL7S 5C4JC 4OIQA 3GTLC 4ZH4A 3I4MC 3W2WB 1R9TC 2PNWA 1WCMC 5TMCA 1QRUA 3PO2C 4BXXC 4A3MC 2EGWA 3S1NC 1D6KA 4UY88 1TWHC 1EUQA 4G7ZA 2EGVA 2AE0X 4OIOA 3HOUC 4G7HA 1Y1VC 5TMFA 1TWCC 1QRTA 1V6ZA 4LJZA 5HQHA 4XSZA 3HOVC 3FKIC 3RZDC 4QIWD 2A68A 4C2MC 4WF9S 4C3JC 1FEUA 1SMYA 2RD2A 4WFAS 4QJVA 3GTQC 2R92C 3RZOC 5GAGW 4E8BA 4A3FC 5GAEW 2YU9C 3DLLS 1TWFC 1QTQA 2B63C 3S2HC 3X1LB 3CZBA 3GTKC 4XLNA 3I4NC 4GZYA 4MEXA 4A3GC 2CX8A 3HKZD 2NWAA 2PI8A 1Y1WC 4YFNA 4A3IC 2VUMC 4Y52C 3HOYC 3GTPC 3S14C 4LK1A 1QRSA 5IYDC 4A3BC 1O0BA 2E2JC 2JA6C 4P2BA 3HOXC 3HOWC 2KPUA 3H3VD 2Y0SD 2WB1D 1GTSA 4BY1C 4A3DC 3K7AC 4KN7A 1YNJA 2A69A 3GTMC 4V194 1EXDA 2JA8C 4WFBS 3LYWA 3S17C 5FLMC
chains in the Genus database with same CATH topology
4H3SA 4WFNS 5IZNA 3PIOS 5GAGW 4JXZA 1DFUP 1B75A 5GAEW 3DLLS 5DM6S 4IO9S 1EUYA 4H4KA 3AIIA 1QTQA 5BNZA 3X1LB 2ZJPS 2RD2A 1NYLA 5GADW 3CF5S 3J7ZV 2ZJQS 5JVGS 5DM7S 5HL7S 4IOCS 1ZJWA 5JVHS 4U67S 3W2WB 4WCES 4JYZA 1GTRA 1QRSA 1O0BA 1QRUA 4IOAS 1D6KA 4P2BA 4UY88 1EUQA 1UDXA 4JXXA 5GAHW 1GTSA 1QRTA 2HZ7A 3PIPS 4WF9S 1FEUA 3W2VB 2ZJRS 1O0CA 1EXDA 4WFBS 4V194 4WFAS 2RE8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4H3S A;  4WFN S;  5IZN A;  3PIO S;  5GAG W;  4JXZ A;  1DFU P;  1B75 A;  5GAE W;  3DLL S;  5DM6 S;  4IO9 S;  1EUY A;  3AII A;  1QTQ A;  5BNZ A;  2ZJP S;  2RD2 A;  1NYL A;  5GAD W;  3CF5 S;  3J7Z V;  2ZJQ S;  5JVG S;  5DM7 S;  5HL7 S;  4IOC S;  1ZJW A;  5JVH S;  4U67 S;  4WCE S;  4JYZ A;  1GTR A;  1QRS A;  1O0B A;  1QRU A;  4IOA S;  1D6K A;  4P2B A;  4UY8 8;  1EUQ A;  4JXX A;  5GAH W;  1GTS A;  1QRT A;  2HZ7 A;  3PIP S;  4WF9 S;  1FEU A;  2ZJR S;  1O0C A;  1EXD A;  4WFB S;  4WFA S;  2RE8 A; 
#chains in the Genus database with same CATH topology
 3HOZ C;  4YG2 A;  5IZN A;  2NVT C;  2G6G A;  4MEY A;  4KMU A;  4JXZ A;  1B75 A;  4LLG A;  2A6E A;  5DM6 S;  1EUY A;  5IYB C;  3GTJ C;  4XSX A;  3S16 C;  3S2D C;  4Y7N C;  2Z0Y A;  1VHY A;  3J7Z V;  4L69 A;  4LK0 A;  5IP9 C;  5JVG S;  2PMZ D;  4BY7 C;  5JVH S;  4U67 S;  4WCE S;  2BE5 A;  2PIC A;  4KN4 A;  2L3U A;  1K83 C;  1NXZ A;  4NOI A;  1ZYR A;  4OIP A;  1I50 C;  2JA7 C;  1VHK A;  2NVX C;  1BDF A;  2HZ7 A;  3S15 C;  4A3K C;  3KW2 A;  2E2I C;  4JK1 A;  4OIN A;  3W2V B;  2ZJR S;  2L5N A;  4YFK A;  2PJJ A;  2RE8 A;  3GTO C;  4H3S A;  4WFN S;  3WOD A;  4G7O A;  3S1M C;  2NVQ C;  1TWG C;  4OIR A;  4YFX A;  3AII A;  5C44 C;  3H0G C;  2KXY A;  4Q5S A;  2ZJP S;  2A6H A;  5GAD W;  1IW7 A;  5DM7 S;  1SFO C;  1I6H C;  4IOC S;  1ZJW A;  2NVY C;  5IYC C;  2PPB A;  4JYZ A;  1GTR A;  2O5J A;  2O5I A;  3M3Y C;  4IOA S;  4C3I C;  4XLP A;  4A93 C;  3DXJ A;  5D4D A;  1UDX A;  5IP7 C;  3S1Q C;  4JXX A;  1YNN A;  4BBR C;  2GAE A;  4Q4Z A;  5GAH W;  2JA5 C;  3GTG C;  3PO3 C;  1Z85 A;  2KQ1 A;  4A3C C;  3S1R C;  2R93 C;  3PIP S;  1O0C A;  4AYB D;  2R7Z C;  5C3E C;  1TWA C;  3M4O C;  3PIO S;  1I3Q C;  2E2H C;  1DFU P;  4A3E C;  2CW0 A;  4MQ9 A;  4IO9 S;  4A3L C;  4H4K A;  3EQL A;  2WAQ D;  5BNZ A;  1HQM A;  4A3J C;  4X6A C;  5C4X C;  4C3H C;  4BBS C;  1NYL A;  2PA8 D;  3CF5 S;  1I6V A;  2ZJQ S;  3CQZ C;  4J3C A;  2G5D A;  5HL7 S;  5C4J C;  4OIQ A;  3GTL C;  4ZH4 A;  3I4M C;  3W2W B;  1R9T C;  2PNW A;  1WCM C;  5TMC A;  1QRU A;  3PO2 C;  4BXX C;  4A3M C;  2EGW A;  3S1N C;  1D6K A;  4UY8 8;  1TWH C;  1EUQ A;  4G7Z A;  2EGV A;  2AE0 X;  4OIO A;  3HOU C;  4G7H A;  1Y1V C;  5TMF A;  1TWC C;  1QRT A;  1V6Z A;  4LJZ A;  5HQH A;  4XSZ A;  3HOV C;  3FKI C;  3RZD C;  4QIW D;  2A68 A;  4C2M C;  4WF9 S;  4C3J C;  1FEU A;  1SMY A;  2RD2 A;  4WFA S;  4QJV A;  3GTQ C;  2R92 C;  3RZO C;  5GAG W;  4E8B A;  4A3F C;  5GAE W;  2YU9 C;  3DLL S;  1TWF C;  1QTQ A;  2B63 C;  3S2H C;  3X1L B;  3CZB A;  3GTK C;  4XLN A;  3I4N C;  4GZY A;  4MEX A;  4A3G C;  2CX8 A;  3HKZ D;  2NWA A;  2PI8 A;  1Y1W C;  4YFN A;  4A3I C;  2VUM C;  4Y52 C;  3HOY C;  3GTP C;  3S14 C;  4LK1 A;  1QRS A;  5IYD C;  4A3B C;  1O0B A;  2E2J C;  2JA6 C;  4P2B A;  3HOX C;  3HOW C;  2KPU A;  3H3V D;  2Y0S D;  2WB1 D;  1GTS A;  4BY1 C;  4A3D C;  3K7A C;  4KN7 A;  1YNJ A;  2A69 A;  3GTM C;  4V19 4;  1EXD A;  2JA8 C;  4WFB S;  3LYW A;  3S17 C;  5FLM C; 
#chains in the Genus database with same CATH homology
 4H3S A;  4WFN S;  5IZN A;  3PIO S;  5GAG W;  4JXZ A;  1DFU P;  1B75 A;  5GAE W;  3DLL S;  5DM6 S;  4IO9 S;  1EUY A;  4H4K A;  3AII A;  1QTQ A;  5BNZ A;  3X1L B;  2ZJP S;  2RD2 A;  1NYL A;  5GAD W;  3CF5 S;  3J7Z V;  2ZJQ S;  5JVG S;  5DM7 S;  5HL7 S;  4IOC S;  1ZJW A;  5JVH S;  4U67 S;  3W2W B;  4WCE S;  4JYZ A;  1GTR A;  1QRS A;  1O0B A;  1QRU A;  4IOA S;  1D6K A;  4P2B A;  4UY8 8;  1EUQ A;  1UDX A;  4JXX A;  5GAH W;  1GTS A;  1QRT A;  2HZ7 A;  3PIP S;  4WF9 S;  1FEU A;  3W2V B;  2ZJR S;  1O0C A;  1EXD A;  4WFB S;  4V19 4;  4WFA S;  2RE8 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...