1FEUA

Crystal structure of ribosomal protein tl5, one of the ctc family proteins, complexed with a fragment of 5s rrna.
Total Genus 39
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
185
structure length
185
Chain Sequence
MEYRLKAYYREGEKPSALRRAGKLPGLMYNRHLNRKVYVDLVEFDKVFRQASIHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYVPLRFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSLHASDLKLPPGVELAVSPEETIAAVVPPEDVEKLAE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
source organism Thermus thermophilus
publication title Structure of ribosomal protein TL5 complexed with RNA provides new insights into the CTC family of stress proteins.
pubmed doi rcsb
molecule keywords 19 NT FRAGMENT OF 5S RRNA
total genus 39
structure length 185
sequence length 185
chains with identical sequence D
ec nomenclature
pdb deposition date 2000-07-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01386 Ribosomal_L25p Ribosomal L25p family
A PF14693 Ribosomal_TL5_C Ribosomal protein TL5, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.240.10 Mainly Beta Beta Barrel Ribosomal Protein L25; Chain P Ribosomal Protein L25; Chain P 1feuA01
2.170.120.20 Mainly Beta Beta Complex RNA Polymerase Alpha Subunit; Chain A, domain 2 Ribosomal protein L25, beta domain 1feuA02
5GADW 1QRTA 4U67S 5GAGW 4WFNS 4P2BA 5DM7S 4IOAS 2ZJQS 5GAEW 4WF9S 1GTRA 5BNZA 1EUYA 1QRSA 1D6KA 4WCES 2RE8A 3CF5S 1EUQA 1QTQA 4H3SA 5DM6S 5JVGS 2ZJPS 1B75A 2ZJRS 2HZ7A 4IO9S 1O0BA 1QRUA 1DFUP 4IOCS 3J7ZV 4JYZA 4WFBS 5IZNA 1ZJWA 3PIPS 3DLLS 4UY88 1GTSA 1EXDA 1NYLA 5HL7S 2RD2A 5JVHS 4JXXA 1O0CA 1FEUA 5GAHW 4WFAS 3AIIA 4JXZA 3PIOS
chains in the Genus database with same CATH superfamily
2NVYC 1QRTA 1IW7A 2E2HC 4U67S 3GTQC 2A6EA 2YU9C 4L69A 1VHYA 4JK1A 3X1LB 2O5JA 1Z85A 5GAEW 2ZJQS 5IYDC 3EQLA 2PPBA 1GTRA 4G7OA 2CX8A 1QRSA 5IP7C 1TWFC 3GTKC 3HOWC 1EUQA 3GTOC 4Y7NC 3GTPC 4BBRC 2ZJRS 2HZ7A 2CW0A 2JA6C 1QRUA 5FLMC 3M3YC 1I3QC 4IOCS 4KMUA 4NOIA 3GTMC 2JA8C 1R9TC 4XLNA 3HOUC 2L5NA 5TMFA 4LJZA 5TMCA 3S16C 4UY88 1EXDA 2BE5A 2WB1D 5HQHA 2JA5C 1NYLA 3S1QC 4J3CA 2EGVA 5GAHW 5IYBC 3S15C 1BDFA 3H3VD 1WCMC 3GTLC 4YG2A 5D4DA 4KN7A 4G7HA 2PJJA 4IOAS 5DM7S 2PNWA 1Y1VC 3HKZD 3S14C 2GAEA 4C3IC 1SFOC 4G7ZA 1D6KA 3S1RC 1QTQA 4QJVA 3CQZC 5JVGS 4ZH4A 2NVTC 3FKIC 4XLPA 4IO9S 4A3IC 4BY1C 3PO3C 2O5IA 3S2HC 4V194 2A69A 5C4JC 4BBSC 4A3JC 2NWAA 4YFXA 3M4OC 4X6AC 3K7AC 3HOZC 1UDXA 3DLLS 4GZYA 1I50C 1K83C 4OINA 3RZDC 4JXXA 5IP9C 4E8BA 1FEUA 1TWHC 4LK0A 1SMYA 5GADW 4OIQA 2PI8A 4XSZA 1HQMA 3S1MC 2Z0YA 2VUMC 3I4MC 3S1NC 4A3KC 5GAGW 2PA8D 4WFNS 4MEYA 4OIRA 3S2DC 2G6GA 2KQ1A 4OIPA 4A3MC 4OIOA 4A93C 4WF9S 4LLGA 4Q5SA 4A3GC 2AE0X 4LK1A 2L3UA 4KN4A 1EUYA 3WODA 4C2MC 5C4XC 3HOXC 4WCES 2RE8A 3GTJC 1TWGC 1YNNA 2ZJPS 1ZYRA 4Y52C 5C3EC 2R93C 1DFUP 1TWAC 2G5DA 4QIWD 4BY7C 4JYZA 1Y1WC 2B63C 3LYWA 5IZNA 4BXXC 3PIPS 3DXJA 1GTSA 2A68A 5JVHS 4YFKA 1VHKA 2RD2A 3H0GC 1O0CA 2PMZD 2R92C 1YNJA 4WFAS 3AIIA 4JXZA 2KPUA 3I4NC 2R7ZC 2A6HA 1I6HC 4YFNA 2KXYA 4AYBD 4P2BA 3HOVC 4A3EC 2Y0SD 1TWCC 5BNZA 3HOYC 2NVQC 5IYCC 2PICA 4Q4ZA 3RZOC 3CF5S 4A3LC 4MQ9A 2EGWA 3KW2A 3CZBA 4H3SA 5DM6S 4A3FC 1B75A 4A3CC 1I6VA 1O0BA 4H4KA 2JA7C 1V6ZA 3J7ZV 4A3BC 3W2WB 2E2IC 4WFBS 2WAQD 1ZJWA 2E2JC 3GTGC 1NXZA 3W2VB 5C44C 3S17C 5HL7S 4C3HC 4MEXA 3PO2C 4XSXA 4C3JC 2NVXC 4A3DC 3PIOS
chains in the Genus database with same CATH topology
5GADW 1QRTA 4U67S 5GAGW 3X1LB 4WFNS 4P2BA 5DM7S 4IOAS 2ZJQS 5GAEW 4WF9S 1GTRA 5BNZA 1EUYA 1QRSA 1D6KA 4WCES 2RE8A 3CF5S 1EUQA 1QTQA 4H3SA 5DM6S 5JVGS 2ZJPS 1B75A 2ZJRS 2HZ7A 4IO9S 1O0BA 4H4KA 1QRUA 1DFUP 4IOCS 3J7ZV 4V194 3W2WB 4JYZA 4WFBS 5IZNA 1ZJWA 3PIPS 1UDXA 3DLLS 1GTSA 4UY88 1EXDA 3W2VB 1NYLA 5HL7S 2RD2A 5JVHS 4JXXA 1O0CA 1FEUA 5GAHW 4WFAS 3AIIA 4JXZA 3PIOS
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5GAD W;  1QRT A;  4U67 S;  5GAG W;  4WFN S;  4P2B A;  5DM7 S;  4IOA S;  2ZJQ S;  5GAE W;  4WF9 S;  1GTR A;  5BNZ A;  1EUY A;  1QRS A;  1D6K A;  4WCE S;  2RE8 A;  3CF5 S;  1EUQ A;  1QTQ A;  4H3S A;  5DM6 S;  5JVG S;  2ZJP S;  1B75 A;  2ZJR S;  2HZ7 A;  4IO9 S;  1O0B A;  1QRU A;  1DFU P;  4IOC S;  3J7Z V;  4JYZ A;  4WFB S;  5IZN A;  1ZJW A;  3PIP S;  3DLL S;  4UY8 8;  1GTS A;  1EXD A;  1NYL A;  5HL7 S;  2RD2 A;  5JVH S;  4JXX A;  1O0C A;  1FEU A;  5GAH W;  4WFA S;  3AII A;  4JXZ A;  3PIO S; 
#chains in the Genus database with same CATH topology
 2NVY C;  1QRT A;  1IW7 A;  2E2H C;  4U67 S;  3GTQ C;  2A6E A;  2YU9 C;  4L69 A;  1VHY A;  4JK1 A;  3X1L B;  2O5J A;  1Z85 A;  5GAE W;  2ZJQ S;  5IYD C;  3EQL A;  2PPB A;  1GTR A;  4G7O A;  2CX8 A;  1QRS A;  5IP7 C;  1TWF C;  3GTK C;  3HOW C;  1EUQ A;  3GTO C;  4Y7N C;  3GTP C;  4BBR C;  2ZJR S;  2HZ7 A;  2CW0 A;  2JA6 C;  1QRU A;  5FLM C;  3M3Y C;  1I3Q C;  4IOC S;  4KMU A;  4NOI A;  3GTM C;  2JA8 C;  1R9T C;  4XLN A;  3HOU C;  2L5N A;  5TMF A;  4LJZ A;  5TMC A;  3S16 C;  4UY8 8;  1EXD A;  2BE5 A;  2WB1 D;  5HQH A;  2JA5 C;  1NYL A;  3S1Q C;  4J3C A;  2EGV A;  5GAH W;  5IYB C;  3S15 C;  1BDF A;  3H3V D;  1WCM C;  3GTL C;  4YG2 A;  5D4D A;  4KN7 A;  4G7H A;  2PJJ A;  4IOA S;  5DM7 S;  2PNW A;  1Y1V C;  3HKZ D;  3S14 C;  2GAE A;  4C3I C;  1SFO C;  4G7Z A;  1D6K A;  3S1R C;  1QTQ A;  4QJV A;  3CQZ C;  5JVG S;  4ZH4 A;  2NVT C;  3FKI C;  4XLP A;  4IO9 S;  4A3I C;  4BY1 C;  3PO3 C;  2O5I A;  3S2H C;  4V19 4;  2A69 A;  5C4J C;  4BBS C;  4A3J C;  2NWA A;  4YFX A;  3M4O C;  4X6A C;  3K7A C;  3HOZ C;  1UDX A;  3DLL S;  4GZY A;  1I50 C;  1K83 C;  4OIN A;  3RZD C;  4JXX A;  5IP9 C;  4E8B A;  1FEU A;  1TWH C;  4LK0 A;  1SMY A;  5GAD W;  4OIQ A;  2PI8 A;  4XSZ A;  1HQM A;  3S1M C;  2Z0Y A;  2VUM C;  3I4M C;  3S1N C;  4A3K C;  5GAG W;  2PA8 D;  4WFN S;  4MEY A;  4OIR A;  3S2D C;  2G6G A;  2KQ1 A;  4OIP A;  4A3M C;  4OIO A;  4A93 C;  4WF9 S;  4LLG A;  4Q5S A;  4A3G C;  2AE0 X;  4LK1 A;  2L3U A;  4KN4 A;  1EUY A;  3WOD A;  4C2M C;  5C4X C;  3HOX C;  4WCE S;  2RE8 A;  3GTJ C;  1TWG C;  1YNN A;  2ZJP S;  1ZYR A;  4Y52 C;  5C3E C;  2R93 C;  1DFU P;  1TWA C;  2G5D A;  4QIW D;  4BY7 C;  4JYZ A;  1Y1W C;  2B63 C;  3LYW A;  5IZN A;  4BXX C;  3PIP S;  3DXJ A;  1GTS A;  2A68 A;  5JVH S;  4YFK A;  1VHK A;  2RD2 A;  3H0G C;  1O0C A;  2PMZ D;  2R92 C;  1YNJ A;  4WFA S;  3AII A;  4JXZ A;  2KPU A;  3I4N C;  2R7Z C;  2A6H A;  1I6H C;  4YFN A;  2KXY A;  4AYB D;  4P2B A;  3HOV C;  4A3E C;  2Y0S D;  1TWC C;  5BNZ A;  3HOY C;  2NVQ C;  5IYC C;  2PIC A;  4Q4Z A;  3RZO C;  3CF5 S;  4A3L C;  4MQ9 A;  2EGW A;  3KW2 A;  3CZB A;  4H3S A;  5DM6 S;  4A3F C;  1B75 A;  4A3C C;  1I6V A;  1O0B A;  4H4K A;  2JA7 C;  1V6Z A;  3J7Z V;  4A3B C;  3W2W B;  2E2I C;  4WFB S;  2WAQ D;  1ZJW A;  2E2J C;  3GTG C;  1NXZ A;  3W2V B;  5C44 C;  3S17 C;  5HL7 S;  4C3H C;  4MEX A;  3PO2 C;  4XSX A;  4C3J C;  2NVX C;  4A3D C;  3PIO S; 
#chains in the Genus database with same CATH homology
 5GAD W;  1QRT A;  4U67 S;  5GAG W;  3X1L B;  4WFN S;  4P2B A;  5DM7 S;  4IOA S;  2ZJQ S;  5GAE W;  4WF9 S;  1GTR A;  5BNZ A;  1EUY A;  1QRS A;  1D6K A;  4WCE S;  2RE8 A;  3CF5 S;  1EUQ A;  1QTQ A;  4H3S A;  5DM6 S;  5JVG S;  2ZJP S;  1B75 A;  2ZJR S;  2HZ7 A;  4IO9 S;  1O0B A;  4H4K A;  1QRU A;  1DFU P;  4IOC S;  3J7Z V;  4V19 4;  3W2W B;  4JYZ A;  4WFB S;  5IZN A;  1ZJW A;  3PIP S;  1UDX A;  3DLL S;  1GTS A;  4UY8 8;  1EXD A;  3W2V B;  1NYL A;  5HL7 S;  2RD2 A;  5JVH S;  4JXX A;  1O0C A;  1FEU A;  5GAH W;  4WFA S;  3AII A;  4JXZ A;  3PIO S; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...