1FFUB

Carbon monoxide dehydrogenase from hydrogenophaga pseudoflava which lacks the mo-pyranopterin moiety of the molybdenum cofactor
Total Genus 251
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
251
sequence length
797
structure length
795
Chain Sequence
DAEARELALAGMGASRLRKEDARFIQGKGNYVDDIKMPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEYDELPVVIDPIDALKPDAPVLREDLAGKTSGAHGPREHHNHIFTWGAGDKAATDAVFANAPVTVSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNKVGIYPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYSFRVTEAVYLIERMVDVLAQKLNMDKAEIRAKNFIRKEQFPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPTLMGIGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQAYHQPPAGLEPGLEAVHYYDPPNFTYPFGIYLCVVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDYFLPTAVETPHWETDHTVTPSPHHPIGAKGVAESPHVGSIPTFTAAVVDAFAHVGVTHLDMPHTSYRVWKSLKEHNLAL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase
molecule keywords CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE
publication title The effect of intracellular molybdenum in Hydrogenophaga pseudoflava on the crystallographic structure of the seleno-molybdo-iron-sulfur flavoenzyme carbon monoxide dehydrogenase.
pubmed doi rcsb
total genus 251
structure length 795
sequence length 797
chains with identical sequence E
ec nomenclature ec 1.2.5.3: Aerobic carbon monoxide dehydrogenase.
pdb deposition date 2000-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01315 Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
B PF02738 Ald_Xan_dh_C2 Molybdopterin-binding domain of aldehyde dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1ffuB03
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1ffuB02
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1ffuB05
3.30.365.10 Alpha Beta 2-Layer Sandwich Aldehyde Oxidoreductase; domain 4 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 1ffuB04
3.90.1170.50 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead 1ffuB01
3NS1C 4C80A 3NVYC 3ETRC 1FIQC 1N63B 1JRPB 1SIJA 1FFUB 4C7YA 2W3SB 3HRDA 4US9A 2W3RB 3FC4A 2W55B 4USAA 1N60B 1WYGA 4C7ZA 3AMZA 1SB3A 3HRDB 3NVVC 2W54B 4US8A 1FFVB 1FO4A 3AN1A 3EUB4 3B9JC 3SR6C 4ZOHA 1DGJA 1VDVA 3NVWC 1N62B 1N5XA 1V97A 1JROB 1N61B 1N5WB 3AM9A 2E3TA 1RM6A 3FAHA 3L4PA 1ZXIB 1VLBA 3NRZC 3NVZC
chains in the Genus database with same CATH superfamily
1O4UA 3CCMH 4C80A 1UOUA 4IOCJ 3J7ZM 3CCJH 3C2FA 3WNZA 1N63B 1SIJA 1VQLH 1Q82J 3C2EA 4WCEJ 2W3SB 1QPNA 3HRDA 1NVJA 2DSJA 4USAA 1N60B 1K9MJ 5GAHN 2B7QA 4EAFA 1YHQH 5MLCO 5H1SO 3CCUH 1YJNH 1YTDA 2W54B 4KWVA 5HUPA 5EP8A 2Q5WE 3C2OA 3CF5J 3CCRH 2J0FA 2QIEA 1VQ8H 5DM6J 3PIOJ 1YJ9H 1KQSH 4WFAJ 1V97A 3FAHA 3VMMA 3NVZC 3L4PA 3NRZC 4GA4A 1QPRA 1QPOA 3CC2H 3NVYC 1FMAE 1FIQC 2OTLH 3CCSH 1JRPB 3I55H 1FFUB 4C7YA 3TQVA 4EADA 1KC8J 5MPOC 4KWWA 3GNNA 4LHMA 2WK5A 2W55B 4YYYA 1M1KJ 1BRWA 1SB3A 5GAGN 3C2RA 3HRDB 3CC4H 3G4SH 3CXCH 3G71H 1W2BH 1VQNH 4US8A 5HUOA 3EUB4 1VQKH 1DGJA 3H5QA 3CCQH 4WFNJ 5DM7J 1QVGH 1N5WB 4XR5A 1YTEA 1RM6A 4UY8M 5HULA 3CCEH 5AYXA 5EY3A 3OW2H 1Q86J 4GA5A 1K73J 1KD1J 5AYYA 3CMEH 2JBMA 2OMDA 3PAJA 2ZJPJ 2B7NA 3DLLJ 5HL7J 3FC4A 1OTPA 1NJIJ 4AP8A 1WYGA 5GAEN 4C7ZA 2ZJRJ 3AMZA 4YEKA 3PIPJ 1YJWH 3NVVC 4U67J 3CCLH 2ZJQJ 1JJ2H 1FFVB 2PA2A 1FO4A 3L0GA 5AYZA 4WFBJ 1VQ5H 3CPWH 3CD6H 3B9JC 4ZOHA 1S72H 1VDVA 3CC7H 1YITH 3NVWC 3CMAH 1VQPH 1N62B 1N61B 1FM0E 3AM9A 1VQ4H 1VQ7H 1K8AJ 1YTKA 1VQ9H 1AZYA 3BIIE 5GADN 2QA4H 3NS1C 1T3QB 3ETRC 2I14A 4I9AA 1M90J 3C2VA 1VQ6H 2I1OA 3I56H 1Y69K 3RPFA 4US9A 5AN9F 2W3RB 4GA6A 1WKIA 3CCVH 1QAPA 1YIJH 2B7PA 1Q7YJ 1QPQA 5JVGJ 4WF9J 2WP4A 3WO1A 3WO0A 2WK6A 4X46A 2OTJH 1NVIE 3AN1A 1VQMH 1N8RJ 1YI2H 3SR6C 4IO9J 5JVHJ 1QVFH 1X1OA 1N5XA 1JROB 2QEXH 1VQOH 2E3TA 2TPTA 4IOAJ 1ZXIB 1VLBA 3G6EH 1Q81J
chains in the Genus database with same CATH topology
3NS1C 4C80A 3NVYC 3ETRC 1FIQC 1N63B 1JRPB 1SIJA 1FFUB 4C7YA 2W3SB 3HRDA 4US9A 2W3RB 3FC4A 2W55B 4USAA 1N60B 1WYGA 4C7ZA 3AMZA 1SB3A 3HRDB 3NVVC 2W54B 4US8A 1FFVB 1FO4A 3AN1A 3EUB4 3B9JC 3SR6C 4ZOHA 1DGJA 1VDVA 3NVWC 1N62B 1N5XA 1V97A 1JROB 1N61B 1N5WB 3AM9A 2E3TA 1RM6A 3FAHA 3L4PA 1ZXIB 1VLBA 3NRZC 3NVZC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NS1 C;  4C80 A;  3NVY C;  3ETR C;  1FIQ C;  1N63 B;  1JRP B;  1SIJ A;  1FFU B;  4C7Y A;  2W3S B;  3HRD A;  4US9 A;  2W3R B;  3FC4 A;  2W55 B;  4USA A;  1N60 B;  1WYG A;  4C7Z A;  3AMZ A;  1SB3 A;  3HRD B;  3NVV C;  2W54 B;  4US8 A;  1FFV B;  1FO4 A;  3AN1 A;  3EUB 4;  3B9J C;  3SR6 C;  4ZOH A;  1DGJ A;  1VDV A;  3NVW C;  1N62 B;  1N5X A;  1V97 A;  1JRO B;  1N61 B;  1N5W B;  3AM9 A;  2E3T A;  1RM6 A;  3FAH A;  3L4P A;  1ZXI B;  1VLB A;  3NRZ C;  3NVZ C; 
#chains in the Genus database with same CATH topology
 1O4U A;  3CCM H;  4C80 A;  1UOU A;  4IOC J;  3J7Z M;  3CCJ H;  3C2F A;  3WNZ A;  1N63 B;  1SIJ A;  1VQL H;  1Q82 J;  3C2E A;  4WCE J;  2W3S B;  1QPN A;  3HRD A;  1NVJ A;  2DSJ A;  4USA A;  1N60 B;  1K9M J;  5GAH N;  2B7Q A;  4EAF A;  1YHQ H;  5MLC O;  5H1S O;  3CCU H;  1YJN H;  1YTD A;  2W54 B;  4KWV A;  5HUP A;  5EP8 A;  2Q5W E;  3C2O A;  3CF5 J;  3CCR H;  2J0F A;  2QIE A;  1VQ8 H;  5DM6 J;  3PIO J;  1YJ9 H;  1KQS H;  4WFA J;  1V97 A;  3FAH A;  3VMM A;  3NVZ C;  3L4P A;  3NRZ C;  4GA4 A;  1QPR A;  1QPO A;  3CC2 H;  3NVY C;  1FMA E;  1FIQ C;  2OTL H;  3CCS H;  1JRP B;  3I55 H;  1FFU B;  4C7Y A;  3TQV A;  4EAD A;  1KC8 J;  5MPO C;  4KWW A;  3GNN A;  4LHM A;  2WK5 A;  2W55 B;  4YYY A;  1M1K J;  1BRW A;  1SB3 A;  5GAG N;  3C2R A;  3HRD B;  3CC4 H;  3G4S H;  3CXC H;  3G71 H;  1W2B H;  1VQN H;  4US8 A;  5HUO A;  3EUB 4;  1VQK H;  1DGJ A;  3H5Q A;  3CCQ H;  4WFN J;  5DM7 J;  1QVG H;  1N5W B;  4XR5 A;  1YTE A;  1RM6 A;  4UY8 M;  5HUL A;  3CCE H;  5AYX A;  5EY3 A;  3OW2 H;  1Q86 J;  4GA5 A;  1K73 J;  1KD1 J;  5AYY A;  3CME H;  2JBM A;  2OMD A;  3PAJ A;  2ZJP J;  2B7N A;  3DLL J;  5HL7 J;  3FC4 A;  1OTP A;  1NJI J;  4AP8 A;  1WYG A;  5GAE N;  4C7Z A;  2ZJR J;  3AMZ A;  4YEK A;  3PIP J;  1YJW H;  3NVV C;  4U67 J;  3CCL H;  2ZJQ J;  1JJ2 H;  1FFV B;  2PA2 A;  1FO4 A;  3L0G A;  5AYZ A;  4WFB J;  1VQ5 H;  3CPW H;  3CD6 H;  3B9J C;  4ZOH A;  1S72 H;  1VDV A;  3CC7 H;  1YIT H;  3NVW C;  3CMA H;  1VQP H;  1N62 B;  1N61 B;  1FM0 E;  3AM9 A;  1VQ4 H;  1VQ7 H;  1K8A J;  1YTK A;  1VQ9 H;  1AZY A;  3BII E;  5GAD N;  2QA4 H;  3NS1 C;  1T3Q B;  3ETR C;  2I14 A;  4I9A A;  1M90 J;  3C2V A;  1VQ6 H;  2I1O A;  3I56 H;  1Y69 K;  3RPF A;  4US9 A;  5AN9 F;  2W3R B;  4GA6 A;  1WKI A;  3CCV H;  1QAP A;  1YIJ H;  2B7P A;  1Q7Y J;  1QPQ A;  5JVG J;  4WF9 J;  2WP4 A;  3WO1 A;  3WO0 A;  2WK6 A;  4X46 A;  2OTJ H;  1NVI E;  3AN1 A;  1VQM H;  1N8R J;  1YI2 H;  3SR6 C;  4IO9 J;  5JVH J;  1QVF H;  1X1O A;  1N5X A;  1JRO B;  2QEX H;  1VQO H;  2E3T A;  2TPT A;  4IOA J;  1ZXI B;  1VLB A;  3G6E H;  1Q81 J; 
#chains in the Genus database with same CATH homology
 3NS1 C;  4C80 A;  3NVY C;  3ETR C;  1FIQ C;  1N63 B;  1JRP B;  1SIJ A;  1FFU B;  4C7Y A;  2W3S B;  3HRD A;  4US9 A;  2W3R B;  3FC4 A;  2W55 B;  4USA A;  1N60 B;  1WYG A;  4C7Z A;  3AMZ A;  1SB3 A;  3HRD B;  3NVV C;  2W54 B;  4US8 A;  1FFV B;  1FO4 A;  3AN1 A;  3EUB 4;  3B9J C;  3SR6 C;  4ZOH A;  1DGJ A;  1VDV A;  3NVW C;  1N62 B;  1N5X A;  1V97 A;  1JRO B;  1N61 B;  1N5W B;  3AM9 A;  2E3T A;  1RM6 A;  3FAH A;  3L4P A;  1ZXI B;  1VLB A;  3NRZ C;  3NVZ C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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