1FJGD

Structure of the thermus thermophilus 30s ribosomal subunit in complex with the antibiotics streptomycin, spectinomycin, and paromomycin
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
208
structure length
208
Chain Sequence
GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVQENLVIEFYSR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
publication title Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
pubmed doi rcsb
total genus 66
structure length 208
sequence length 208
ec nomenclature
pdb deposition date 2000-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF00163 Ribosomal_S4 Ribosomal protein S4/S9 N-terminal domain
D PF01479 S4 S4 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1050.10 Mainly Alpha Orthogonal Bundle Ribosomal Protein S4 Delta 41; Chain A, domain 1 Ribosomal Protein S4 Delta 41; Chain A, domain 1 1fjgD01
3.10.290.10 Alpha Beta Roll Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A RNA-binding S4 domain 1fjgD02
4DUZD 4B3SD 4JI2D 5LMND 1XNRD 4JI5D 1C06A 4DR4D 4DR3D 4DR1D 4B3RD 4LF7D 2UUAD 1VIOA 1HR0D 4DR2D 1XMOD 4LF6D 1N32D 4X62D 1KSVA 4DV3D 4DR5D 1N34D 4DR7D 4KHPD 1H3EA 2UU9D 1JH3A 2UXBD 1HNXD 3OTOD 4DV1D 3DH3A 4JV5D 5IWAD 4LFAD 2ISTA 2UUCD 4DR6D 1N33D 4DV6D 2VQFD 4NXMD 4DV2D 4LF4D 4LGTA 3HP7A 2UUBD 4JI1D 1KSKA 4JI8D 1XNQD 5BR8D 1KSLA 4DV7D 1N36D 4LFCD 4LF9D 2VQED 4X64D 4K0KD 4DUYD 1IBKD 4X65D 4JYAD 1DM9A 4JI0D 2ZM6D 2JANA 1J5ED 1H3FA 4LFBD 2KTLA 3T1HD 4LF8D 2F4VD 1HNWD 4DV0D 1FJGD 3KBGA 4AQYD 1I94D 4OX9D 1P9KA 4GKKD 2UXCD 2HHHD 2E5LD 4JI4D 4YY3D 2K6PA 4OUDA 4NXND 2UXDD 1XMQD 4B3MD 4JI7D 5LMUD 4GKJD 4JI6D 4B3TD 1C05A 4YHHD 1FKAD 1IBMD 1HNZD 1IBLD 4DV5D 3T1YD 4LF5D 4X66D 4JI3D 4DV4D
chains in the Genus database with same CATH superfamily
4DUZD 4B3SD 3J7AF 4JI2D 5LMND 1XNRD 4JI5D 1C06A 4DR4D 4DR3D 4NNJA 4DR1D 3J80E 4B3RD 4LF7D 2UUAD 1VIOA 1HR0D 4DR2D 1XMOD 4LF6D 5A2QE 1N32D 4X62D 1KSVA 2ZTBA 4DV3D 4DR5D 1N34D 4DR7D 4KHPD 1H3EA 2UU9D 1JH3A 2UXBD 1HNXD 3OTOD 4DV1D 3DH3A 4JV5D 5IWAD 4LFAD 2ISTA 2UUCD 4DR6D 1N33D 3J81E 5LL6S 4DV6D 2VQFD 4NXMD 4DV2D 4LF4D 4LGTA 3HP7A 4W5VB 2UUBD 4JI1D 1KSKA 2I1SA 4JI8D 1XNQD 2L3NA 5BR8D 1KSLA 4DV7D 1Y8QB 1Y8XB 1N36D 2NVUB 4LFCD 4LF9D 2VQED 4X64D 4K0KD 4DUYD 1IBKD 4X65D 4JYAD 5KNLA 1DM9A 4JI0D 2ZM6D 2JANA 1J5ED 1H3FA 4LFBD 2KTLA 3T1HD 4LF8D 1Y8RB 2F4VD 1HNWD 5IT9E 5FQ2B 4DV0D 1FJGD 3KBGA 4AQYD 1I94D 3JAME 4OX9D 1P9KA 3ONHA 4GKKD 3KYDB 2UXCD 2HHHD 2E5LD 4JI4D 4YY3D 2K6PA 4OUDA 4NXND 4II2A 5FLXE 3KYCB 3CMMA 3FN1A 2UXDD 1XMQD 4B3MD 4JI7D 5LMUD 4GKJD 4JI6D 4B3TD 1C05A 4YHHD 1FKAD 1IBMD 1HNZD 3ONGA 1IBLD 4DV5D 3T1YD 4II3A 2LQ7A 4LF5D 4X66D 4JI3D 4DV4D
chains in the Genus database with same CATH topology
4DUZD 4B3SD 4JI2D 5LMND 1XNRD 4JI5D 1C06A 4DR4D 4DR3D 4DR1D 4B3RD 4LF7D 2UUAD 1VIOA 1HR0D 4DR2D 1XMOD 4LF6D 1N32D 4X62D 1KSVA 4DV3D 4DR5D 1N34D 4DR7D 4KHPD 1H3EA 2UU9D 1JH3A 2UXBD 1HNXD 3OTOD 4DV1D 3DH3A 4JV5D 5IWAD 4LFAD 2ISTA 2UUCD 4DR6D 1N33D 4DV6D 2VQFD 4NXMD 4DV2D 4LF4D 4LGTA 3HP7A 2UUBD 4JI1D 1KSKA 4JI8D 1XNQD 2L3NA 5BR8D 1KSLA 4DV7D 1N36D 4LFCD 4LF9D 2VQED 4X64D 4K0KD 4DUYD 1IBKD 4X65D 4JYAD 1DM9A 4JI0D 2ZM6D 2JANA 1J5ED 1H3FA 4LFBD 2KTLA 3T1HD 4LF8D 2F4VD 1HNWD 4DV0D 1FJGD 3KBGA 4AQYD 1I94D 4OX9D 1P9KA 4GKKD 2UXCD 2HHHD 2E5LD 4JI4D 4YY3D 2K6PA 4OUDA 4NXND 2UXDD 1XMQD 4B3MD 4JI7D 5LMUD 4GKJD 4JI6D 4B3TD 1C05A 4YHHD 1FKAD 1IBMD 1HNZD 1IBLD 4DV5D 3T1YD 4LF5D 4X66D 4JI3D 4DV4D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4DUZ D;  4B3S D;  4JI2 D;  5LMN D;  1XNR D;  4JI5 D;  1C06 A;  4DR4 D;  4DR3 D;  4DR1 D;  4B3R D;  4LF7 D;  2UUA D;  1VIO A;  1HR0 D;  4DR2 D;  1XMO D;  4LF6 D;  1N32 D;  4X62 D;  1KSV A;  4DV3 D;  4DR5 D;  1N34 D;  4DR7 D;  4KHP D;  1H3E A;  2UU9 D;  1JH3 A;  2UXB D;  1HNX D;  3OTO D;  4DV1 D;  3DH3 A;  4JV5 D;  5IWA D;  4LFA D;  2IST A;  2UUC D;  4DR6 D;  1N33 D;  4DV6 D;  2VQF D;  4NXM D;  4DV2 D;  4LF4 D;  4LGT A;  3HP7 A;  2UUB D;  4JI1 D;  1KSK A;  4JI8 D;  1XNQ D;  5BR8 D;  1KSL A;  4DV7 D;  1N36 D;  4LFC D;  4LF9 D;  2VQE D;  4X64 D;  4K0K D;  4DUY D;  1IBK D;  4X65 D;  4JYA D;  1DM9 A;  4JI0 D;  2ZM6 D;  2JAN A;  1J5E D;  1H3F A;  4LFB D;  2KTL A;  3T1H D;  4LF8 D;  2F4V D;  1HNW D;  4DV0 D;  1FJG D;  3KBG A;  4AQY D;  1I94 D;  4OX9 D;  1P9K A;  4GKK D;  2UXC D;  2HHH D;  2E5L D;  4JI4 D;  4YY3 D;  2K6P A;  4OUD A;  4NXN D;  2UXD D;  1XMQ D;  4B3M D;  4JI7 D;  5LMU D;  4GKJ D;  4JI6 D;  4B3T D;  1C05 A;  4YHH D;  1FKA D;  1IBM D;  1HNZ D;  1IBL D;  4DV5 D;  3T1Y D;  4LF5 D;  4X66 D;  4JI3 D;  4DV4 D; 
#chains in the Genus database with same CATH topology
 4DUZ D;  4B3S D;  3J7A F;  4JI2 D;  5LMN D;  1XNR D;  4JI5 D;  1C06 A;  4DR4 D;  4DR3 D;  4NNJ A;  4DR1 D;  3J80 E;  4B3R D;  4LF7 D;  2UUA D;  1VIO A;  1HR0 D;  4DR2 D;  1XMO D;  4LF6 D;  5A2Q E;  1N32 D;  4X62 D;  1KSV A;  2ZTB A;  4DV3 D;  4DR5 D;  1N34 D;  4DR7 D;  4KHP D;  1H3E A;  2UU9 D;  1JH3 A;  2UXB D;  1HNX D;  3OTO D;  4DV1 D;  3DH3 A;  4JV5 D;  5IWA D;  4LFA D;  2IST A;  2UUC D;  4DR6 D;  1N33 D;  3J81 E;  5LL6 S;  4DV6 D;  2VQF D;  4NXM D;  4DV2 D;  4LF4 D;  4LGT A;  3HP7 A;  4W5V B;  2UUB D;  4JI1 D;  1KSK A;  2I1S A;  4JI8 D;  1XNQ D;  2L3N A;  5BR8 D;  1KSL A;  4DV7 D;  1Y8Q B;  1Y8X B;  1N36 D;  2NVU B;  4LFC D;  4LF9 D;  2VQE D;  4X64 D;  4K0K D;  4DUY D;  1IBK D;  4X65 D;  4JYA D;  5KNL A;  1DM9 A;  4JI0 D;  2ZM6 D;  2JAN A;  1J5E D;  1H3F A;  4LFB D;  2KTL A;  3T1H D;  4LF8 D;  1Y8R B;  2F4V D;  1HNW D;  5IT9 E;  5FQ2 B;  4DV0 D;  1FJG D;  3KBG A;  4AQY D;  1I94 D;  3JAM E;  4OX9 D;  1P9K A;  3ONH A;  4GKK D;  3KYD B;  2UXC D;  2HHH D;  2E5L D;  4JI4 D;  4YY3 D;  2K6P A;  4OUD A;  4NXN D;  4II2 A;  5FLX E;  3KYC B;  3CMM A;  3FN1 A;  2UXD D;  1XMQ D;  4B3M D;  4JI7 D;  5LMU D;  4GKJ D;  4JI6 D;  4B3T D;  1C05 A;  4YHH D;  1FKA D;  1IBM D;  1HNZ D;  3ONG A;  1IBL D;  4DV5 D;  3T1Y D;  4II3 A;  2LQ7 A;  4LF5 D;  4X66 D;  4JI3 D;  4DV4 D; 
#chains in the Genus database with same CATH homology
 4DUZ D;  4B3S D;  4JI2 D;  5LMN D;  1XNR D;  4JI5 D;  1C06 A;  4DR4 D;  4DR3 D;  4DR1 D;  4B3R D;  4LF7 D;  2UUA D;  1VIO A;  1HR0 D;  4DR2 D;  1XMO D;  4LF6 D;  1N32 D;  4X62 D;  1KSV A;  4DV3 D;  4DR5 D;  1N34 D;  4DR7 D;  4KHP D;  1H3E A;  2UU9 D;  1JH3 A;  2UXB D;  1HNX D;  3OTO D;  4DV1 D;  3DH3 A;  4JV5 D;  5IWA D;  4LFA D;  2IST A;  2UUC D;  4DR6 D;  1N33 D;  4DV6 D;  2VQF D;  4NXM D;  4DV2 D;  4LF4 D;  4LGT A;  3HP7 A;  2UUB D;  4JI1 D;  1KSK A;  4JI8 D;  1XNQ D;  2L3N A;  5BR8 D;  1KSL A;  4DV7 D;  1N36 D;  4LFC D;  4LF9 D;  2VQE D;  4X64 D;  4K0K D;  4DUY D;  1IBK D;  4X65 D;  4JYA D;  1DM9 A;  4JI0 D;  2ZM6 D;  2JAN A;  1J5E D;  1H3F A;  4LFB D;  2KTL A;  3T1H D;  4LF8 D;  2F4V D;  1HNW D;  4DV0 D;  1FJG D;  3KBG A;  4AQY D;  1I94 D;  4OX9 D;  1P9K A;  4GKK D;  2UXC D;  2HHH D;  2E5L D;  4JI4 D;  4YY3 D;  2K6P A;  4OUD A;  4NXN D;  2UXD D;  1XMQ D;  4B3M D;  4JI7 D;  5LMU D;  4GKJ D;  4JI6 D;  4B3T D;  1C05 A;  4YHH D;  1FKA D;  1IBM D;  1HNZ D;  1IBL D;  4DV5 D;  3T1Y D;  4LF5 D;  4X66 D;  4JI3 D;  4DV4 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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