1FK5A

Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes with oleic acid revealed by high-resolution x-ray crystallography
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
93
structure length
93
Chain Sequence
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
molecule keywords NONSPECIFIC LIPID-TRANSFER PROTEIN
publication title Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
pubmed doi rcsb
total genus 30
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 2000-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 1fk5A00
1MIDA 1SM7A 1UVCA 1BV2A 1JTBA 1LIPA 1TMQB 2N2ZA 1FK2A 1FK4A 1BIPA 1BWOA 1FK3A 1N89A 2N81A 2LVFA 1BE2A 1SIYA 1MZLA 1RZLA 3GSHA 1MZMA 1PNBB 4CVWC 1AFHA 1FK7A 2DS2B 1L6HA 1S6DA 1FK6A 1W2QA 2RKNA 1UVAA 2ALGA 5DOMA 1FK5A 1B1UA 1BEAA 1TUKA 1HYPA 1PSYA 4XUWA 1FK1A 1T12A 2B5SA 1HSSA 1CZ2A 1BFAA 1FK0A 2MALA 1GH1A 1UVBA
chains in the Genus database with same CATH superfamily
1MIDA 1SM7A 1UVCA 1BV2A 1JTBA 1LIPA 1TMQB 2N2ZA 1FK2A 1FK4A 1BIPA 1BWOA 1FK3A 1N89A 2N81A 2LVFA 1BE2A 1SIYA 1MZLA 1RZLA 3GSHA 3HMJG 1MZMA 1PNBB 4CVWC 1AFHA 1FK7A 1MIWA 2DS2B 1L6HA 1S6DA 1FK6A 1W2QA 2RKNA 1UVAA 2ALGA 2UV8G 5DOMA 1FK5A 1B1UA 1BEAA 1MIYA 1HYPA 1TUKA 3H3AA 1PSYA 3H37A 4XUWA 1FK1A 1T12A 2B5SA 1HSSA 2VKZG 1CZ2A 1MIVA 1BFAA 1FK0A 2MALA 1GH1A 1UVBA
chains in the Genus database with same CATH topology
1MIDA 1SM7A 1UVCA 1BV2A 1JTBA 1LIPA 1TMQB 2N2ZA 1FK2A 1FK4A 1BIPA 1BWOA 1FK3A 1N89A 2N81A 2LVFA 1BE2A 1SIYA 1MZLA 1RZLA 3GSHA 1MZMA 1PNBB 4CVWC 1AFHA 1FK7A 2DS2B 1L6HA 1S6DA 1FK6A 1W2QA 2RKNA 1UVAA 2ALGA 5DOMA 1FK5A 1B1UA 1BEAA 1TUKA 1HYPA 1PSYA 4XUWA 1FK1A 1T12A 2B5SA 1HSSA 1CZ2A 1BFAA 1FK0A 2MALA 1GH1A 1UVBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MID A;  1SM7 A;  1UVC A;  1BV2 A;  1JTB A;  1LIP A;  1TMQ B;  2N2Z A;  1FK2 A;  1FK4 A;  1BIP A;  1BWO A;  1FK3 A;  1N89 A;  2N81 A;  2LVF A;  1BE2 A;  1SIY A;  1MZL A;  1RZL A;  3GSH A;  1MZM A;  1PNB B;  4CVW C;  1AFH A;  1FK7 A;  2DS2 B;  1L6H A;  1S6D A;  1FK6 A;  1W2Q A;  2RKN A;  1UVA A;  2ALG A;  5DOM A;  1FK5 A;  1B1U A;  1BEA A;  1TUK A;  1HYP A;  1PSY A;  4XUW A;  1FK1 A;  1T12 A;  2B5S A;  1HSS A;  1CZ2 A;  1BFA A;  1FK0 A;  2MAL A;  1GH1 A;  1UVB A; 
#chains in the Genus database with same CATH topology
 1MID A;  1SM7 A;  1UVC A;  1BV2 A;  1JTB A;  1LIP A;  1TMQ B;  2N2Z A;  1FK2 A;  1FK4 A;  1BIP A;  1BWO A;  1FK3 A;  1N89 A;  2N81 A;  2LVF A;  1BE2 A;  1SIY A;  1MZL A;  1RZL A;  3GSH A;  3HMJ G;  1MZM A;  1PNB B;  4CVW C;  1AFH A;  1FK7 A;  1MIW A;  2DS2 B;  1L6H A;  1S6D A;  1FK6 A;  1W2Q A;  2RKN A;  1UVA A;  2ALG A;  2UV8 G;  5DOM A;  1FK5 A;  1B1U A;  1BEA A;  1MIY A;  1HYP A;  1TUK A;  3H3A A;  1PSY A;  3H37 A;  4XUW A;  1FK1 A;  1T12 A;  2B5S A;  1HSS A;  2VKZ G;  1CZ2 A;  1MIV A;  1BFA A;  1FK0 A;  2MAL A;  1GH1 A;  1UVB A; 
#chains in the Genus database with same CATH homology
 1MID A;  1SM7 A;  1UVC A;  1BV2 A;  1JTB A;  1LIP A;  1TMQ B;  2N2Z A;  1FK2 A;  1FK4 A;  1BIP A;  1BWO A;  1FK3 A;  1N89 A;  2N81 A;  2LVF A;  1BE2 A;  1SIY A;  1MZL A;  1RZL A;  3GSH A;  1MZM A;  1PNB B;  4CVW C;  1AFH A;  1FK7 A;  2DS2 B;  1L6H A;  1S6D A;  1FK6 A;  1W2Q A;  2RKN A;  1UVA A;  2ALG A;  5DOM A;  1FK5 A;  1B1U A;  1BEA A;  1TUK A;  1HYP A;  1PSY A;  4XUW A;  1FK1 A;  1T12 A;  2B5S A;  1HSS A;  1CZ2 A;  1BFA A;  1FK0 A;  2MAL A;  1GH1 A;  1UVB A; 
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#similar chains, but unknotted
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