1FK6A

Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes with alpha-linolenic acid revealed by high-resolution x-ray crystallography
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
93
structure length
93
Chain Sequence
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
molecule keywords NON-SPECIFIC LIPID TRANSFER PROTEIN
publication title Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
pubmed doi rcsb
total genus 28
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 2000-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 1fk6A00
1RZLA 1JTBA 1MZMA 1FK7A 1TMQB 1BWOA 1FK4A 1FK5A 1BV2A 1B1UA 1SM7A 1FK2A 2MALA 1FK0A 1TUKA 2RKNA 1PNBB 4CVWC 4XUWA 1BIPA 1CZ2A 1S6DA 2B5SA 1W2QA 1UVAA 1SIYA 1LIPA 2ALGA 5DOMA 1FK3A 2N2ZA 1PSYA 1FK1A 1MZLA 1HSSA 1T12A 2N81A 1N89A 2LVFA 1FK6A 1GH1A 1BFAA 1UVBA 1L6HA 1HYPA 1BE2A 1UVCA 1MIDA 1AFHA 2DS2B 1BEAA 3GSHA
chains in the Genus database with same CATH superfamily
3HMJG 1RZLA 1JTBA 1MZMA 1FK7A 1TMQB 2UV8G 1BWOA 1FK4A 1FK5A 3H37A 1BV2A 1B1UA 1SM7A 1FK2A 2MALA 1FK0A 1TUKA 2RKNA 1PNBB 4CVWC 4XUWA 1BIPA 1CZ2A 1S6DA 2B5SA 1W2QA 2VKZG 1UVAA 1SIYA 1LIPA 1MIVA 2ALGA 5DOMA 1FK3A 2N2ZA 1PSYA 1FK1A 1MZLA 1MIYA 3H3AA 1HSSA 1T12A 2N81A 1AFHA 1N89A 2LVFA 1FK6A 1GH1A 1BFAA 1UVBA 1L6HA 1HYPA 1BE2A 1UVCA 1MIDA 1BEAA 2DS2B 1MIWA 3GSHA
chains in the Genus database with same CATH topology
1RZLA 1JTBA 1MZMA 1FK7A 1TMQB 1BWOA 1FK4A 1FK5A 1BV2A 1B1UA 1SM7A 1FK2A 2MALA 1FK0A 1TUKA 2RKNA 1PNBB 4CVWC 4XUWA 1BIPA 1CZ2A 1S6DA 2B5SA 1W2QA 1UVAA 1SIYA 1LIPA 2ALGA 5DOMA 1FK3A 2N2ZA 1PSYA 1FK1A 1MZLA 1HSSA 1T12A 2N81A 1N89A 2LVFA 1FK6A 1GH1A 1BFAA 1UVBA 1L6HA 1HYPA 1BE2A 1UVCA 1MIDA 1AFHA 2DS2B 1BEAA 3GSHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RZL A;  1JTB A;  1MZM A;  1FK7 A;  1TMQ B;  1BWO A;  1FK4 A;  1FK5 A;  1BV2 A;  1B1U A;  1SM7 A;  1FK2 A;  2MAL A;  1FK0 A;  1TUK A;  2RKN A;  1PNB B;  4CVW C;  4XUW A;  1BIP A;  1CZ2 A;  1S6D A;  2B5S A;  1W2Q A;  1UVA A;  1SIY A;  1LIP A;  2ALG A;  5DOM A;  1FK3 A;  2N2Z A;  1PSY A;  1FK1 A;  1MZL A;  1HSS A;  1T12 A;  2N81 A;  1N89 A;  2LVF A;  1FK6 A;  1GH1 A;  1BFA A;  1UVB A;  1L6H A;  1HYP A;  1BE2 A;  1UVC A;  1MID A;  1AFH A;  2DS2 B;  1BEA A;  3GSH A; 
#chains in the Genus database with same CATH topology
 3HMJ G;  1RZL A;  1JTB A;  1MZM A;  1FK7 A;  1TMQ B;  2UV8 G;  1BWO A;  1FK4 A;  1FK5 A;  3H37 A;  1BV2 A;  1B1U A;  1SM7 A;  1FK2 A;  2MAL A;  1FK0 A;  1TUK A;  2RKN A;  1PNB B;  4CVW C;  4XUW A;  1BIP A;  1CZ2 A;  1S6D A;  2B5S A;  1W2Q A;  2VKZ G;  1UVA A;  1SIY A;  1LIP A;  1MIV A;  2ALG A;  5DOM A;  1FK3 A;  2N2Z A;  1PSY A;  1FK1 A;  1MZL A;  1MIY A;  3H3A A;  1HSS A;  1T12 A;  2N81 A;  1AFH A;  1N89 A;  2LVF A;  1FK6 A;  1GH1 A;  1BFA A;  1UVB A;  1L6H A;  1HYP A;  1BE2 A;  1UVC A;  1MID A;  1BEA A;  2DS2 B;  1MIW A;  3GSH A; 
#chains in the Genus database with same CATH homology
 1RZL A;  1JTB A;  1MZM A;  1FK7 A;  1TMQ B;  1BWO A;  1FK4 A;  1FK5 A;  1BV2 A;  1B1U A;  1SM7 A;  1FK2 A;  2MAL A;  1FK0 A;  1TUK A;  2RKN A;  1PNB B;  4CVW C;  4XUW A;  1BIP A;  1CZ2 A;  1S6D A;  2B5S A;  1W2Q A;  1UVA A;  1SIY A;  1LIP A;  2ALG A;  5DOM A;  1FK3 A;  2N2Z A;  1PSY A;  1FK1 A;  1MZL A;  1HSS A;  1T12 A;  2N81 A;  1N89 A;  2LVF A;  1FK6 A;  1GH1 A;  1BFA A;  1UVB A;  1L6H A;  1HYP A;  1BE2 A;  1UVC A;  1MID A;  1AFH A;  2DS2 B;  1BEA A;  3GSH A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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