1FK7A

Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes with ricinoleic acid revealed by high-resolution x-ray crystallography
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
93
structure length
93
Chain Sequence
AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
molecule keywords NON-SPECIFIC LIPID TRANSFER PROTEIN
publication title Structural basis of non-specific lipid binding in maize lipid-transfer protein complexes revealed by high-resolution X-ray crystallography.
pubmed doi rcsb
total genus 30
structure length 93
sequence length 93
ec nomenclature
pdb deposition date 2000-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00234 Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.110.10 Mainly Alpha Orthogonal Bundle Hydrophobic Seed Protein Plant lipid-transfer and hydrophobic proteins 1fk7A00
1BIPA 1UVBA 1FK5A 1L6HA 2LVFA 3GSHA 2DS2B 1BEAA 1JTBA 1FK1A 1GH1A 1UVCA 1SIYA 1FK7A 1BWOA 1BV2A 2N2ZA 1BE2A 1FK6A 2MALA 1FK0A 1HSSA 1FK4A 1TMQB 1TUKA 1N89A 1PNBB 1CZ2A 1PSYA 1S6DA 1B1UA 1UVAA 2ALGA 2N81A 2RKNA 4XUWA 1FK3A 1W2QA 2B5SA 5DOMA 1BFAA 1SM7A 1FK2A 1T12A 4CVWC 1MZLA 1AFHA 1RZLA 1LIPA 1MIDA 1MZMA 1HYPA
chains in the Genus database with same CATH superfamily
1BIPA 1UVBA 1FK5A 1L6HA 1MIWA 2LVFA 3GSHA 2DS2B 1BEAA 3H3AA 1JTBA 1FK1A 1GH1A 1UVCA 1MIVA 1SIYA 1FK7A 1BWOA 2VKZG 1BV2A 2N2ZA 1BE2A 1FK6A 2MALA 1FK0A 1HSSA 1FK4A 1TMQB 1TUKA 1N89A 1PNBB 3HMJG 1CZ2A 1PSYA 1S6DA 1B1UA 1UVAA 2ALGA 2N81A 2RKNA 4XUWA 1FK3A 1W2QA 2B5SA 5DOMA 1BFAA 1SM7A 2UV8G 1FK2A 1T12A 3H37A 1MZLA 4CVWC 1AFHA 1RZLA 1LIPA 1MIDA 1MZMA 1MIYA 1HYPA
chains in the Genus database with same CATH topology
1BIPA 1UVBA 1FK5A 1L6HA 2LVFA 3GSHA 2DS2B 1BEAA 1JTBA 1FK1A 1GH1A 1UVCA 1SIYA 1FK7A 1BWOA 1BV2A 2N2ZA 1BE2A 1FK6A 2MALA 1FK0A 1HSSA 1FK4A 1TMQB 1TUKA 1N89A 1PNBB 1CZ2A 1PSYA 1S6DA 1B1UA 1UVAA 2ALGA 2N81A 2RKNA 4XUWA 1FK3A 1W2QA 2B5SA 5DOMA 1BFAA 1SM7A 1FK2A 1T12A 4CVWC 1MZLA 1AFHA 1RZLA 1LIPA 1MIDA 1MZMA 1HYPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BIP A;  1UVB A;  1FK5 A;  1L6H A;  2LVF A;  3GSH A;  2DS2 B;  1BEA A;  1JTB A;  1FK1 A;  1GH1 A;  1UVC A;  1SIY A;  1FK7 A;  1BWO A;  1BV2 A;  2N2Z A;  1BE2 A;  1FK6 A;  2MAL A;  1FK0 A;  1HSS A;  1FK4 A;  1TMQ B;  1TUK A;  1N89 A;  1PNB B;  1CZ2 A;  1PSY A;  1S6D A;  1B1U A;  1UVA A;  2ALG A;  2N81 A;  2RKN A;  4XUW A;  1FK3 A;  1W2Q A;  2B5S A;  5DOM A;  1BFA A;  1SM7 A;  1FK2 A;  1T12 A;  4CVW C;  1MZL A;  1AFH A;  1RZL A;  1LIP A;  1MID A;  1MZM A;  1HYP A; 
#chains in the Genus database with same CATH topology
 1BIP A;  1UVB A;  1FK5 A;  1L6H A;  1MIW A;  2LVF A;  3GSH A;  2DS2 B;  1BEA A;  3H3A A;  1JTB A;  1FK1 A;  1GH1 A;  1UVC A;  1MIV A;  1SIY A;  1FK7 A;  1BWO A;  2VKZ G;  1BV2 A;  2N2Z A;  1BE2 A;  1FK6 A;  2MAL A;  1FK0 A;  1HSS A;  1FK4 A;  1TMQ B;  1TUK A;  1N89 A;  1PNB B;  3HMJ G;  1CZ2 A;  1PSY A;  1S6D A;  1B1U A;  1UVA A;  2ALG A;  2N81 A;  2RKN A;  4XUW A;  1FK3 A;  1W2Q A;  2B5S A;  5DOM A;  1BFA A;  1SM7 A;  2UV8 G;  1FK2 A;  1T12 A;  3H37 A;  1MZL A;  4CVW C;  1AFH A;  1RZL A;  1LIP A;  1MID A;  1MZM A;  1MIY A;  1HYP A; 
#chains in the Genus database with same CATH homology
 1BIP A;  1UVB A;  1FK5 A;  1L6H A;  2LVF A;  3GSH A;  2DS2 B;  1BEA A;  1JTB A;  1FK1 A;  1GH1 A;  1UVC A;  1SIY A;  1FK7 A;  1BWO A;  1BV2 A;  2N2Z A;  1BE2 A;  1FK6 A;  2MAL A;  1FK0 A;  1HSS A;  1FK4 A;  1TMQ B;  1TUK A;  1N89 A;  1PNB B;  1CZ2 A;  1PSY A;  1S6D A;  1B1U A;  1UVA A;  2ALG A;  2N81 A;  2RKN A;  4XUW A;  1FK3 A;  1W2Q A;  2B5S A;  5DOM A;  1BFA A;  1SM7 A;  1FK2 A;  1T12 A;  4CVW C;  1MZL A;  1AFH A;  1RZL A;  1LIP A;  1MID A;  1MZM A;  1HYP A; 
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#similar chains, but unknotted
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