1FS1A

Insights into scf ubiquitin ligases from the structure of the skp1-skp2 complex
Total Genus 11
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
41
structure length
41
Chain Sequence
WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords CYCLIN A/CDK2-ASSOCIATED P19
publication title Insights into SCF ubiquitin ligases from the structure of the Skp1-Skp2 complex.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Ligase
total genus 11
structure length 41
sequence length 41
chains with identical sequence C
ec nomenclature
pdb deposition date 2000-09-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fs1A00
1FS1A 2E31A 3OGKB 2OVRB 3MKSB 2E32A 2P1QB 2OVQB 5IBKB 3C6NB 2OVPB 3OGMB 3C6PB 1LDKE 2P1MB 2P1OB 3C6OB 3OGLB 1NEXB 1P22A 2P1NB 3WSOA 3V7DB 2P1PB 4I6JB 3L2OB
chains in the Genus database with same CATH superfamily
3OGKB 4I9QA 2DTUA 2JHCA 4E4BA 4QNCA 1FZ4E 3NAEA 3NCIA 1MTYG 4EPHA 4ICGC 4E3SA 4FJJA 4IT5A 4DTJA 4M3TA 3QEIA 4J2BA 4KHYA 3HGKE 2MMBA 2P1MB 4EYWA 4FJIA 4FJ5A 1Q9YA 4FJ9A 3C6OB 4M3UA 4AKGA 4GAMC 4DU4A 4FJ8A 3E4YA 2JQTA 3TAFA 2LF3A 3TAGA 1FZIE 2H4TA 2P1NB 3L1NA 1XVBE 3N1BA 3N1EA 3WSOA 4ADNA 3NDKA 4J2EA 4FJHA 3CQ8A 4DU1A 4M3YA 3QEXA 4AKHA 2P1PB 2RCUA 2QXFA 2MW2A 4X5NA 1FZ7E 4FJGA 3TJYA 4M3WA 3RMBA 2JHPA 3SVIA 1XVCE 4FJMA 3KD1E 1FZ0E 5IZ7A 1WAFA 3SUNA 2E32A 2P5GA 3RMAA 1XVFE 5IBKB 3QNNA 4EP9A 2FW3A 3UO2A 2P1OB 2B1EA 4M45A 4QNDA 2DEBA 3LD8A 4DTRA 1XVGE 3OGLB 4HCCA 3CFRA 4HCBA 3J2PA 3RMCA 4FJLA 1CLQA 2MZWB 2P5OA 2JPNA 4DTPA 3SPZA 2B7MA 3QEPA 2PFTA 4DTSA 4I6JB 1XU3E 2K5SA 3QETA 4FK0A 2HD0A 5IREA 3S9HA 1FYZE 3LDBA 3NE6A 3QNOA 3TAEA 1FPOA 3UO3A 3SUPA 3SQ1A 4FK2A 4KHUA 1FS1A 2E31A 3HL8A 5H37A 3NGIA 3L8BA 2DY4A 2OVRB 3RMDA 4FJKA 1XMGE 3MKSB 1FZ3E 3E4WA 4M42A 4AKIA 3SQ2A 4DTXA 2OVPB 3OGMB 1WAJA 1LDKE 3C95A 4FJNA 2OZSA 1FZ5E 3BVOA 3CFPA 1FZ6E 2VIXA 1FZ9E 3J27A 3SUQA 2B8IA 1NEXB 2FYOA 1XVEE 4DTNA 3TABA 4FK4A 1N1CA 4AI6A 1XMHE 3NHGA 3QEVA 3C94A 3V7DB 4M3XA 3SQ4A 4M3ZA 4FVMA 2ATQA 2VJ4A 1MMOG 3TL8B 3LZJA 2YB5A 4KHNA 3L2OB 3K2OA 1FXXA 3KD5E 1FZ2E 4FJXA 4KI6A 4KHWA 3QESA 2RKHA 3UIQA 3LZIA 1MHZG 4I9LA 3SPYA 2PFVA 4RL5A 3QERA 3SI6A 2P1QB 2JH8A 4M3RA 3SNNA 1JW2A 1XL3C 4M41A 2OVQB 3C6NB 3SQ0A 4RNGA 3C6PB 1MHYG 3SCXA 4ADOA 3RWUA 1XMFE 4KI4A 1FZ8E 1XU5E 1IH7A 4JRPA 2LF6A 4JS5A 2JHAA 2OZMA 3CFOA 3L0MA 1P22A 2JH9A 1FZHE 4KHQA 4DU3A 3SUOA 4KHSA 1XVDE 3HP9A 2OYQA 4X5MA 4JS4A 4B08A 3SJJA 4FJ7A 3QEWA 3HGLA 1FZ1E 4JRQA 1IG9A 4DTMA 4J2AA 4DTUA 4RG8A 1Q9XA 3LDSA 2VJ5A 4J2DA 4DTOA
chains in the Genus database with same CATH topology
3OGKB 4I9QA 2DTUA 2JHCA 4E4BA 4QNCA 1FZ4E 3NAEA 3NCIA 1MTYG 4EPHA 4E3SA 4FJJA 4DTJA 4M3TA 3QEIA 4J2BA 4KHYA 3HGKE 2MMBA 2P1MB 4EYWA 4FJIA 4FJ5A 1Q9YA 4FJ9A 3C6OB 4M3UA 4AKGA 4GAMC 4DU4A 4FJ8A 3E4YA 3TAFA 2LF3A 3TAGA 1FZIE 2H4TA 2P1NB 3L1NA 1XVBE 3N1BA 3N1EA 3WSOA 4ADNA 3NDKA 4J2EA 4FJHA 3CQ8A 4DU1A 4M3YA 3QEXA 4AKHA 2P1PB 2RCUA 2QXFA 4X5NA 1FZ7E 4FJGA 3TJYA 4M3WA 3RMBA 2JHPA 3SVIA 1XVCE 4FJMA 3KD1E 1FZ0E 5IZ7A 1WAFA 3SUNA 2E32A 2P5GA 3RMAA 1XVFE 5IBKB 3QNNA 4EP9A 2FW3A 2P1OB 2B1EA 4M45A 4QNDA 2DEBA 3LD8A 4DTRA 1XVGE 3OGLB 4HCCA 3CFRA 4HCBA 3J2PA 3RMCA 4FJLA 1CLQA 2MZWB 2P5OA 2JPNA 4DTPA 3SPZA 2B7MA 3QEPA 2PFTA 4DTSA 4I6JB 1XU3E 3QETA 4FK0A 2HD0A 5IREA 3S9HA 1FYZE 3LDBA 3NE6A 3QNOA 3TAEA 3SQ1A 3SUPA 4FK2A 4KHUA 1FS1A 2E31A 3HL8A 5H37A 3NGIA 3L8BA 2DY4A 2OVRB 3RMDA 4FJKA 1XMGE 3MKSB 1FZ3E 3E4WA 4M42A 4AKIA 3SQ2A 4DTXA 2OVPB 3OGMB 1WAJA 1LDKE 3C95A 4FJNA 2OZSA 1FZ5E 3CFPA 1FZ6E 2VIXA 1FZ9E 3J27A 3SUQA 2B8IA 1NEXB 2FYOA 1XVEE 4DTNA 3TABA 4FK4A 4AI6A 1XMHE 3NHGA 3QEVA 3C94A 3V7DB 4M3XA 3SQ4A 4M3ZA 4FVMA 2ATQA 2VJ4A 1MMOG 3TL8B 3LZJA 2YB5A 4KHNA 3L2OB 3K2OA 1FXXA 3KD5E 1FZ2E 4FJXA 4KI6A 4KHWA 3QESA 3UIQA 3LZIA 1MHZG 4I9LA 3SPYA 2PFVA 4RL5A 3QERA 3SI6A 2P1QB 2JH8A 4M3RA 3SNNA 1XL3C 4M41A 2OVQB 3C6NB 3SQ0A 4RNGA 3C6PB 1MHYG 3SCXA 4ADOA 3RWUA 1XMFE 4KI4A 1FZ8E 1XU5E 1IH7A 4JRPA 2LF6A 4JS5A 2JHAA 2OZMA 3CFOA 3L0MA 1P22A 2JH9A 1FZHE 4KHQA 4DU3A 3SUOA 4KHSA 1XVDE 3HP9A 2OYQA 4X5MA 4JS4A 4B08A 3SJJA 4FJ7A 3QEWA 3HGLA 1FZ1E 4JRQA 1IG9A 4DTMA 4J2AA 4DTUA 4RG8A 1Q9XA 3LDSA 2VJ5A 4J2DA 4DTOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FS1 A;  2E31 A;  3OGK B;  2OVR B;  3MKS B;  2E32 A;  2P1Q B;  2OVQ B;  5IBK B;  3C6N B;  2OVP B;  3OGM B;  3C6P B;  1LDK E;  2P1M B;  2P1O B;  3C6O B;  3OGL B;  1NEX B;  1P22 A;  2P1N B;  3WSO A;  3V7D B;  2P1P B;  4I6J B;  3L2O B; 
#chains in the Genus database with same CATH topology
 3OGK B;  4I9Q A;  2DTU A;  2JHC A;  4E4B A;  4QNC A;  1FZ4 E;  3NAE A;  3NCI A;  1MTY G;  4EPH A;  4ICG C;  4E3S A;  4FJJ A;  4IT5 A;  4DTJ A;  4M3T A;  3QEI A;  4J2B A;  4KHY A;  3HGK E;  2MMB A;  2P1M B;  4EYW A;  4FJI A;  4FJ5 A;  1Q9Y A;  4FJ9 A;  3C6O B;  4M3U A;  4AKG A;  4GAM C;  4DU4 A;  4FJ8 A;  3E4Y A;  2JQT A;  3TAF A;  2LF3 A;  3TAG A;  1FZI E;  2H4T A;  2P1N B;  3L1N A;  1XVB E;  3N1B A;  3N1E A;  3WSO A;  4ADN A;  3NDK A;  4J2E A;  4FJH A;  3CQ8 A;  4DU1 A;  4M3Y A;  3QEX A;  4AKH A;  2P1P B;  2RCU A;  2QXF A;  2MW2 A;  4X5N A;  1FZ7 E;  4FJG A;  3TJY A;  4M3W A;  3RMB A;  2JHP A;  3SVI A;  1XVC E;  4FJM A;  3KD1 E;  1FZ0 E;  5IZ7 A;  1WAF A;  3SUN A;  2E32 A;  2P5G A;  3RMA A;  1XVF E;  5IBK B;  3QNN A;  4EP9 A;  2FW3 A;  3UO2 A;  2P1O B;  2B1E A;  4M45 A;  4QND A;  2DEB A;  3LD8 A;  4DTR A;  1XVG E;  3OGL B;  4HCC A;  3CFR A;  4HCB A;  3J2P A;  3RMC A;  4FJL A;  1CLQ A;  2MZW B;  2P5O A;  2JPN A;  4DTP A;  3SPZ A;  2B7M A;  3QEP A;  2PFT A;  4DTS A;  4I6J B;  1XU3 E;  2K5S A;  3QET A;  4FK0 A;  2HD0 A;  5IRE A;  3S9H A;  1FYZ E;  3LDB A;  3NE6 A;  3QNO A;  3TAE A;  1FPO A;  3UO3 A;  3SUP A;  3SQ1 A;  4FK2 A;  4KHU A;  1FS1 A;  2E31 A;  3HL8 A;  5H37 A;  3NGI A;  3L8B A;  2DY4 A;  2OVR B;  3RMD A;  4FJK A;  1XMG E;  3MKS B;  1FZ3 E;  3E4W A;  4M42 A;  4AKI A;  3SQ2 A;  4DTX A;  2OVP B;  3OGM B;  1WAJ A;  1LDK E;  3C95 A;  4FJN A;  2OZS A;  1FZ5 E;  3BVO A;  3CFP A;  1FZ6 E;  2VIX A;  1FZ9 E;  3J27 A;  3SUQ A;  2B8I A;  1NEX B;  2FYO A;  1XVE E;  4DTN A;  3TAB A;  4FK4 A;  1N1C A;  4AI6 A;  1XMH E;  3NHG A;  3QEV A;  3C94 A;  3V7D B;  4M3X A;  3SQ4 A;  4M3Z A;  4FVM A;  2ATQ A;  2VJ4 A;  1MMO G;  3TL8 B;  3LZJ A;  2YB5 A;  4KHN A;  3L2O B;  3K2O A;  1FXX A;  3KD5 E;  1FZ2 E;  4FJX A;  4KI6 A;  4KHW A;  3QES A;  2RKH A;  3UIQ A;  3LZI A;  1MHZ G;  4I9L A;  3SPY A;  2PFV A;  4RL5 A;  3QER A;  3SI6 A;  2P1Q B;  2JH8 A;  4M3R A;  3SNN A;  1JW2 A;  1XL3 C;  4M41 A;  2OVQ B;  3C6N B;  3SQ0 A;  4RNG A;  3C6P B;  1MHY G;  3SCX A;  4ADO A;  3RWU A;  1XMF E;  4KI4 A;  1FZ8 E;  1XU5 E;  1IH7 A;  4JRP A;  2LF6 A;  4JS5 A;  2JHA A;  2OZM A;  3CFO A;  3L0M A;  1P22 A;  2JH9 A;  1FZH E;  4KHQ A;  4DU3 A;  3SUO A;  4KHS A;  1XVD E;  3HP9 A;  2OYQ A;  4X5M A;  4JS4 A;  4B08 A;  3SJJ A;  4FJ7 A;  3QEW A;  3HGL A;  1FZ1 E;  4JRQ A;  1IG9 A;  4DTM A;  4J2A A;  4DTU A;  4RG8 A;  1Q9X A;  3LDS A;  2VJ5 A;  4J2D A;  4DTO A; 
#chains in the Genus database with same CATH homology
 3OGK B;  4I9Q A;  2DTU A;  2JHC A;  4E4B A;  4QNC A;  1FZ4 E;  3NAE A;  3NCI A;  1MTY G;  4EPH A;  4E3S A;  4FJJ A;  4DTJ A;  4M3T A;  3QEI A;  4J2B A;  4KHY A;  3HGK E;  2MMB A;  2P1M B;  4EYW A;  4FJI A;  4FJ5 A;  1Q9Y A;  4FJ9 A;  3C6O B;  4M3U A;  4AKG A;  4GAM C;  4DU4 A;  4FJ8 A;  3E4Y A;  3TAF A;  2LF3 A;  3TAG A;  1FZI E;  2H4T A;  2P1N B;  3L1N A;  1XVB E;  3N1B A;  3N1E A;  3WSO A;  4ADN A;  3NDK A;  4J2E A;  4FJH A;  3CQ8 A;  4DU1 A;  4M3Y A;  3QEX A;  4AKH A;  2P1P B;  2RCU A;  2QXF A;  4X5N A;  1FZ7 E;  4FJG A;  3TJY A;  4M3W A;  3RMB A;  2JHP A;  3SVI A;  1XVC E;  4FJM A;  3KD1 E;  1FZ0 E;  5IZ7 A;  1WAF A;  3SUN A;  2E32 A;  2P5G A;  3RMA A;  1XVF E;  5IBK B;  3QNN A;  4EP9 A;  2FW3 A;  2P1O B;  2B1E A;  4M45 A;  4QND A;  2DEB A;  3LD8 A;  4DTR A;  1XVG E;  3OGL B;  4HCC A;  3CFR A;  4HCB A;  3J2P A;  3RMC A;  4FJL A;  1CLQ A;  2MZW B;  2P5O A;  2JPN A;  4DTP A;  3SPZ A;  2B7M A;  3QEP A;  2PFT A;  4DTS A;  4I6J B;  1XU3 E;  3QET A;  4FK0 A;  2HD0 A;  5IRE A;  3S9H A;  1FYZ E;  3LDB A;  3NE6 A;  3QNO A;  3TAE A;  3SQ1 A;  3SUP A;  4FK2 A;  4KHU A;  1FS1 A;  2E31 A;  3HL8 A;  5H37 A;  3NGI A;  3L8B A;  2DY4 A;  2OVR B;  3RMD A;  4FJK A;  1XMG E;  3MKS B;  1FZ3 E;  3E4W A;  4M42 A;  4AKI A;  3SQ2 A;  4DTX A;  2OVP B;  3OGM B;  1WAJ A;  1LDK E;  3C95 A;  4FJN A;  2OZS A;  1FZ5 E;  3CFP A;  1FZ6 E;  2VIX A;  1FZ9 E;  3J27 A;  3SUQ A;  2B8I A;  1NEX B;  2FYO A;  1XVE E;  4DTN A;  3TAB A;  4FK4 A;  4AI6 A;  1XMH E;  3NHG A;  3QEV A;  3C94 A;  3V7D B;  4M3X A;  3SQ4 A;  4M3Z A;  4FVM A;  2ATQ A;  2VJ4 A;  1MMO G;  3TL8 B;  3LZJ A;  2YB5 A;  4KHN A;  3L2O B;  3K2O A;  1FXX A;  3KD5 E;  1FZ2 E;  4FJX A;  4KI6 A;  4KHW A;  3QES A;  3UIQ A;  3LZI A;  1MHZ G;  4I9L A;  3SPY A;  2PFV A;  4RL5 A;  3QER A;  3SI6 A;  2P1Q B;  2JH8 A;  4M3R A;  3SNN A;  1XL3 C;  4M41 A;  2OVQ B;  3C6N B;  3SQ0 A;  4RNG A;  3C6P B;  1MHY G;  3SCX A;  4ADO A;  3RWU A;  1XMF E;  4KI4 A;  1FZ8 E;  1XU5 E;  1IH7 A;  4JRP A;  2LF6 A;  4JS5 A;  2JHA A;  2OZM A;  3CFO A;  3L0M A;  1P22 A;  2JH9 A;  1FZH E;  4KHQ A;  4DU3 A;  3SUO A;  4KHS A;  1XVD E;  3HP9 A;  2OYQ A;  4X5M A;  4JS4 A;  4B08 A;  3SJJ A;  4FJ7 A;  3QEW A;  3HGL A;  1FZ1 E;  4JRQ A;  1IG9 A;  4DTM A;  4J2A A;  4DTU A;  4RG8 A;  1Q9X A;  3LDS A;  2VJ5 A;  4J2D A;  4DTO A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...