1FS1A

Insights into scf ubiquitin ligases from the structure of the skp1-skp2 complex
Total Genus 11
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
41
structure length
41
Chain Sequence
WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Ligase
source organism Homo sapiens
publication title Insights into SCF ubiquitin ligases from the structure of the Skp1-Skp2 complex.
pubmed doi rcsb
molecule keywords CYCLIN A/CDK2-ASSOCIATED P19
total genus 11
structure length 41
sequence length 41
chains with identical sequence C
ec nomenclature
pdb deposition date 2000-09-08
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.50 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fs1A00
3V7DB 1NEXB 3MKSB 2P1QB 3L2OB 2P1PB 3C6OB 2P1OB 5IBKB 1FS1A 1P22A 3WSOA 3OGMB 3OGKB 1LDKE 3OGLB 2OVQB 2P1MB 4I6JB 2E32A 2OVPB 2OVRB 2P1NB 3C6PB 2E31A 3C6NB
chains in the Genus database with same CATH superfamily
2B8IA 1XVCE 4FK4A 3TAGA 1XVGE 1NEXB 3HL8A 1FZ6E 2OZSA 2P1QB 1XMHE 4JS4A 2JH9A 4FK2A 3E4YA 3L2OB 3C6OB 4FJHA 1FZ5E 2B7MA 2ATQA 3E4WA 3L0MA 3CFPA 2P1OB 3NDKA 3SQ4A 2DY4A 4AI6A 5IBKB 3QESA 3N1BA 2JH8A 4IT5A 3WSOA 3LZJA 2OZMA 1XVBE 1XVEE 2LF3A 4ICGC 4DU1A 2HD0A 3NAEA 3OGLB 3J27A 4RNGA 2VIXA 3HGLA 1MHZG 2P1MB 4M3XA 2VJ5A 3LDBA 2JHCA 3SQ1A 4QNCA 3CFOA 2K5SA 2OVPB 2JHAA 3C94A 3C6PB 4FJMA 3QEIA 4GAMC 2LF6A 3CQ8A 3UIQA 4FVMA 3S9HA 4M3UA 1MTYG 4DTSA 4FJIA 1XL3C 4KHYA 4AKHA 3NE6A 1XU5E 2JHPA 4FK0A 2QXFA 3QEWA 5IREA 1FS1A 4FJ5A 4FJ8A 3OGMB 4B08A 3TABA 3SUOA 4DTPA 4FJGA 4KHUA 3OGKB 2OVQB 3RMDA 4M3WA 3SPYA 2JPNA 4KHQA 4DU4A 4EPHA 3HP9A 1XVFE 2YB5A 3LZIA 3L1NA 4I9LA 4I6JB 4FJ7A 4M45A 2P1NB 3TJYA 4M3ZA 1FZ0E 1FZ1E 2E31A 2FW3A 1FZ9E 3C6NB 3C95A 4ADOA 4J2EA 1N1CA 2P5GA 3BVOA 3L8BA 4X5MA 4KHSA 3MKSB 1FZ8E 4FJXA 4M3TA 2P5OA 2H4TA 4M42A 1CLQA 4FJJA 1FPOA 3QNNA 5H37A 1FZ4E 1MMOG 4M3YA 4DTNA 4M3RA 4DTOA 3QEVA 1XU3E 4AKIA 1P22A 1JW2A 2PFVA 3QETA 3SQ2A 1IG9A 4AKGA 4E3SA 4JRPA 2FYOA 2MW2A 2RCUA 4DTUA 4DTMA 3RWUA 3K2OA 4FJLA 2DTUA 4E4BA 1FZ3E 1FZ2E 3NCIA 3SNNA 1FXXA 1FZ7E 4DTXA 3UO2A 4J2BA 4HCCA 3N1EA 2OVRB 4ADNA 1FYZE 2MZWB 4X5NA 1FZIE 1XVDE 3TL8B 1MHYG 4HCBA 1FZHE 3SUQA 3V7DB 2RKHA 4EP9A 3CFRA 4I9QA 2VJ4A 3SCXA 4DTRA 2DEBA 3TAFA 3SJJA 3RMAA 4J2AA 4KHNA 4DTJA 4KHWA 1XMFE 2P1PB 4KI4A 4FJKA 2OYQA 1WAJA 3QEXA 5IZ7A 4FJNA 3HGKE 3LD8A 3UO3A 3QNOA 1Q9XA 3SPZA 1Q9YA 4DU3A 3NHGA 3NGIA 3SUPA 4RL5A 3RMCA 1LDKE 3LDSA 3KD5E 2JQTA 2B1EA 4EYWA 4QNDA 3RMBA 4J2DA 2PFTA 3SVIA 3KD1E 3SQ0A 4KI6A 3J2PA 2E32A 3SUNA 4RG8A 3TAEA 4JS5A 4M41A 3SI6A 4FJ9A 1IH7A 4JRQA 1XMGE 3QEPA 3QERA 1WAFA 2MMBA
chains in the Genus database with same CATH topology
2B8IA 1XVCE 4FK4A 3TAGA 1XVGE 1NEXB 3HL8A 1FZ6E 2OZSA 2P1QB 1XMHE 4JS4A 2JH9A 4FK2A 3E4YA 3L2OB 3C6OB 4FJHA 1FZ5E 2B7MA 2ATQA 3E4WA 3L0MA 3CFPA 2P1OB 3NDKA 3SQ4A 2DY4A 4AI6A 5IBKB 3QESA 3N1BA 2JH8A 3WSOA 3LZJA 2OZMA 1XVBE 1XVEE 2LF3A 4DU1A 2HD0A 3NAEA 3OGLB 3J27A 4RNGA 2VIXA 3HGLA 1MHZG 2P1MB 4M3XA 2VJ5A 3LDBA 2JHCA 3SQ1A 4QNCA 3CFOA 2OVPB 2JHAA 3C94A 3C6PB 4FJMA 3QEIA 4GAMC 2LF6A 3CQ8A 3UIQA 4FVMA 3S9HA 4M3UA 1MTYG 4DTSA 4FJIA 1XL3C 4KHYA 4AKHA 3NE6A 1XU5E 2JHPA 4FK0A 2QXFA 3QEWA 5IREA 1FS1A 4FJ5A 4FJ8A 3OGMB 4B08A 3TABA 3SUOA 4DTPA 4FJGA 4KHUA 3OGKB 2OVQB 3RMDA 4M3WA 3SPYA 2JPNA 4KHQA 4DU4A 4EPHA 3HP9A 1XVFE 2YB5A 3LZIA 3L1NA 4I9LA 4I6JB 4FJ7A 4M45A 2P1NB 3TJYA 4M3ZA 1FZ0E 1FZ1E 2E31A 2FW3A 1FZ9E 3C95A 3C6NB 4ADOA 4J2EA 2P5GA 3L8BA 4X5MA 4KHSA 3MKSB 1FZ8E 4FJXA 4M3TA 2P5OA 2H4TA 4M42A 1CLQA 4FJJA 3QNNA 5H37A 1FZ4E 1MMOG 4M3YA 4DTNA 4M3RA 4DTOA 3QEVA 1XU3E 4AKIA 1P22A 2PFVA 3QETA 3SQ2A 1IG9A 4AKGA 4E3SA 4JRPA 2FYOA 2RCUA 4DTUA 3RWUA 4DTMA 4FJLA 3K2OA 2DTUA 4E4BA 1FZ3E 1FZ2E 3NCIA 3SNNA 1FXXA 1FZ7E 4DTXA 4J2BA 4HCCA 3N1EA 2OVRB 4ADNA 1FYZE 2MZWB 4X5NA 1FZIE 1XVDE 3TL8B 1MHYG 4HCBA 1FZHE 3SUQA 3V7DB 4EP9A 3CFRA 4I9QA 2VJ4A 3SCXA 4DTRA 2DEBA 3TAFA 3SJJA 3RMAA 4J2AA 4KHNA 4DTJA 4KHWA 1XMFE 2P1PB 4KI4A 4FJKA 2OYQA 1WAJA 3QEXA 5IZ7A 4FJNA 3HGKE 3LD8A 3QNOA 1Q9XA 3SPZA 1Q9YA 4DU3A 3NHGA 3NGIA 3SUPA 4RL5A 3RMCA 1LDKE 3LDSA 3KD5E 2B1EA 4EYWA 4QNDA 3RMBA 4J2DA 2PFTA 3SVIA 3KD1E 3SQ0A 4KI6A 3J2PA 2E32A 3SUNA 4RG8A 3TAEA 4JS5A 4M41A 3SI6A 4FJ9A 1IH7A 4JRQA 1XMGE 3QEPA 3QERA 1WAFA 2MMBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3V7D B;  1NEX B;  3MKS B;  2P1Q B;  3L2O B;  2P1P B;  3C6O B;  2P1O B;  5IBK B;  1FS1 A;  1P22 A;  3WSO A;  3OGM B;  3OGK B;  1LDK E;  3OGL B;  2OVQ B;  2P1M B;  4I6J B;  2E32 A;  2OVP B;  2OVR B;  2P1N B;  3C6P B;  2E31 A;  3C6N B; 
#chains in the Genus database with same CATH topology
 2B8I A;  1XVC E;  4FK4 A;  3TAG A;  1XVG E;  1NEX B;  3HL8 A;  1FZ6 E;  2OZS A;  2P1Q B;  1XMH E;  4JS4 A;  2JH9 A;  4FK2 A;  3E4Y A;  3L2O B;  3C6O B;  4FJH A;  1FZ5 E;  2B7M A;  2ATQ A;  3E4W A;  3L0M A;  3CFP A;  2P1O B;  3NDK A;  3SQ4 A;  2DY4 A;  4AI6 A;  5IBK B;  3QES A;  3N1B A;  2JH8 A;  4IT5 A;  3WSO A;  3LZJ A;  2OZM A;  1XVB E;  1XVE E;  2LF3 A;  4ICG C;  4DU1 A;  2HD0 A;  3NAE A;  3OGL B;  3J27 A;  4RNG A;  2VIX A;  3HGL A;  1MHZ G;  2P1M B;  4M3X A;  2VJ5 A;  3LDB A;  2JHC A;  3SQ1 A;  4QNC A;  3CFO A;  2K5S A;  2OVP B;  2JHA A;  3C94 A;  3C6P B;  4FJM A;  3QEI A;  4GAM C;  2LF6 A;  3CQ8 A;  3UIQ A;  4FVM A;  3S9H A;  4M3U A;  1MTY G;  4DTS A;  4FJI A;  1XL3 C;  4KHY A;  4AKH A;  3NE6 A;  1XU5 E;  2JHP A;  4FK0 A;  2QXF A;  3QEW A;  5IRE A;  1FS1 A;  4FJ5 A;  4FJ8 A;  3OGM B;  4B08 A;  3TAB A;  3SUO A;  4DTP A;  4FJG A;  4KHU A;  3OGK B;  2OVQ B;  3RMD A;  4M3W A;  3SPY A;  2JPN A;  4KHQ A;  4DU4 A;  4EPH A;  3HP9 A;  1XVF E;  2YB5 A;  3LZI A;  3L1N A;  4I9L A;  4I6J B;  4FJ7 A;  4M45 A;  2P1N B;  3TJY A;  4M3Z A;  1FZ0 E;  1FZ1 E;  2E31 A;  2FW3 A;  1FZ9 E;  3C6N B;  3C95 A;  4ADO A;  4J2E A;  1N1C A;  2P5G A;  3BVO A;  3L8B A;  4X5M A;  4KHS A;  3MKS B;  1FZ8 E;  4FJX A;  4M3T A;  2P5O A;  2H4T A;  4M42 A;  1CLQ A;  4FJJ A;  1FPO A;  3QNN A;  5H37 A;  1FZ4 E;  1MMO G;  4M3Y A;  4DTN A;  4M3R A;  4DTO A;  3QEV A;  1XU3 E;  4AKI A;  1P22 A;  1JW2 A;  2PFV A;  3QET A;  3SQ2 A;  1IG9 A;  4AKG A;  4E3S A;  4JRP A;  2FYO A;  2MW2 A;  2RCU A;  4DTU A;  4DTM A;  3RWU A;  3K2O A;  4FJL A;  2DTU A;  4E4B A;  1FZ3 E;  1FZ2 E;  3NCI A;  3SNN A;  1FXX A;  1FZ7 E;  4DTX A;  3UO2 A;  4J2B A;  4HCC A;  3N1E A;  2OVR B;  4ADN A;  1FYZ E;  2MZW B;  4X5N A;  1FZI E;  1XVD E;  3TL8 B;  1MHY G;  4HCB A;  1FZH E;  3SUQ A;  3V7D B;  2RKH A;  4EP9 A;  3CFR A;  4I9Q A;  2VJ4 A;  3SCX A;  4DTR A;  2DEB A;  3TAF A;  3SJJ A;  3RMA A;  4J2A A;  4KHN A;  4DTJ A;  4KHW A;  1XMF E;  2P1P B;  4KI4 A;  4FJK A;  2OYQ A;  1WAJ A;  3QEX A;  5IZ7 A;  4FJN A;  3HGK E;  3LD8 A;  3UO3 A;  3QNO A;  1Q9X A;  3SPZ A;  1Q9Y A;  4DU3 A;  3NHG A;  3NGI A;  3SUP A;  4RL5 A;  3RMC A;  1LDK E;  3LDS A;  3KD5 E;  2JQT A;  2B1E A;  4EYW A;  4QND A;  3RMB A;  4J2D A;  2PFT A;  3SVI A;  3KD1 E;  3SQ0 A;  4KI6 A;  3J2P A;  2E32 A;  3SUN A;  4RG8 A;  3TAE A;  4JS5 A;  4M41 A;  3SI6 A;  4FJ9 A;  1IH7 A;  4JRQ A;  1XMG E;  3QEP A;  3QER A;  1WAF A;  2MMB A; 
#chains in the Genus database with same CATH homology
 2B8I A;  1XVC E;  4FK4 A;  3TAG A;  1XVG E;  1NEX B;  3HL8 A;  1FZ6 E;  2OZS A;  2P1Q B;  1XMH E;  4JS4 A;  2JH9 A;  4FK2 A;  3E4Y A;  3L2O B;  3C6O B;  4FJH A;  1FZ5 E;  2B7M A;  2ATQ A;  3E4W A;  3L0M A;  3CFP A;  2P1O B;  3NDK A;  3SQ4 A;  2DY4 A;  4AI6 A;  5IBK B;  3QES A;  3N1B A;  2JH8 A;  3WSO A;  3LZJ A;  2OZM A;  1XVB E;  1XVE E;  2LF3 A;  4DU1 A;  2HD0 A;  3NAE A;  3OGL B;  3J27 A;  4RNG A;  2VIX A;  3HGL A;  1MHZ G;  2P1M B;  4M3X A;  2VJ5 A;  3LDB A;  2JHC A;  3SQ1 A;  4QNC A;  3CFO A;  2OVP B;  2JHA A;  3C94 A;  3C6P B;  4FJM A;  3QEI A;  4GAM C;  2LF6 A;  3CQ8 A;  3UIQ A;  4FVM A;  3S9H A;  4M3U A;  1MTY G;  4DTS A;  4FJI A;  1XL3 C;  4KHY A;  4AKH A;  3NE6 A;  1XU5 E;  2JHP A;  4FK0 A;  2QXF A;  3QEW A;  5IRE A;  1FS1 A;  4FJ5 A;  4FJ8 A;  3OGM B;  4B08 A;  3TAB A;  3SUO A;  4DTP A;  4FJG A;  4KHU A;  3OGK B;  2OVQ B;  3RMD A;  4M3W A;  3SPY A;  2JPN A;  4KHQ A;  4DU4 A;  4EPH A;  3HP9 A;  1XVF E;  2YB5 A;  3LZI A;  3L1N A;  4I9L A;  4I6J B;  4FJ7 A;  4M45 A;  2P1N B;  3TJY A;  4M3Z A;  1FZ0 E;  1FZ1 E;  2E31 A;  2FW3 A;  1FZ9 E;  3C95 A;  3C6N B;  4ADO A;  4J2E A;  2P5G A;  3L8B A;  4X5M A;  4KHS A;  3MKS B;  1FZ8 E;  4FJX A;  4M3T A;  2P5O A;  2H4T A;  4M42 A;  1CLQ A;  4FJJ A;  3QNN A;  5H37 A;  1FZ4 E;  1MMO G;  4M3Y A;  4DTN A;  4M3R A;  4DTO A;  3QEV A;  1XU3 E;  4AKI A;  1P22 A;  2PFV A;  3QET A;  3SQ2 A;  1IG9 A;  4AKG A;  4E3S A;  4JRP A;  2FYO A;  2RCU A;  4DTU A;  3RWU A;  4DTM A;  4FJL A;  3K2O A;  2DTU A;  4E4B A;  1FZ3 E;  1FZ2 E;  3NCI A;  3SNN A;  1FXX A;  1FZ7 E;  4DTX A;  4J2B A;  4HCC A;  3N1E A;  2OVR B;  4ADN A;  1FYZ E;  2MZW B;  4X5N A;  1FZI E;  1XVD E;  3TL8 B;  1MHY G;  4HCB A;  1FZH E;  3SUQ A;  3V7D B;  4EP9 A;  3CFR A;  4I9Q A;  2VJ4 A;  3SCX A;  4DTR A;  2DEB A;  3TAF A;  3SJJ A;  3RMA A;  4J2A A;  4KHN A;  4DTJ A;  4KHW A;  1XMF E;  2P1P B;  4KI4 A;  4FJK A;  2OYQ A;  1WAJ A;  3QEX A;  5IZ7 A;  4FJN A;  3HGK E;  3LD8 A;  3QNO A;  1Q9X A;  3SPZ A;  1Q9Y A;  4DU3 A;  3NHG A;  3NGI A;  3SUP A;  4RL5 A;  3RMC A;  1LDK E;  3LDS A;  3KD5 E;  2B1E A;  4EYW A;  4QND A;  3RMB A;  4J2D A;  2PFT A;  3SVI A;  3KD1 E;  3SQ0 A;  4KI6 A;  3J2P A;  2E32 A;  3SUN A;  4RG8 A;  3TAE A;  4JS5 A;  4M41 A;  3SI6 A;  4FJ9 A;  1IH7 A;  4JRQ A;  1XMG E;  3QEP A;  3QER A;  1WAF A;  2MMB A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...