1FT0A

Crystal structure of truncated human rhogdi k113a mutant
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
138
structure length
129
Chain Sequence
MVPNVVVTGLTLVCSSAPGPLELDLTSFVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein inhibitor
molecule keywords RHO GDP-DISSOCIATION INHIBITOR 1
publication title Protein crystallization by rational mutagenesis of surface residues: Lys to Ala mutations promote crystallization of RhoGDI.
pubmed doi rcsb
source organism Homo sapiens
total genus 26
structure length 129
sequence length 138
chains with identical sequence B
ec nomenclature
pdb deposition date 2000-09-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.30 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 Coagulation Factor XIII, subunit A, domain 1 1ft0A00
2JHUA 2JHSA 1DS6B 2JHVA 1FSOA 1FT0A 1GDFA 2JI0A 1AJWA 2BXWA 1KMTA 2JHTA 1FT3A 1HH4D 4F38B 2JHZA 1RHOA 2JHYA 2JHXA 1QVYA 1FSTA 2JHWA 1DOAB
chains in the Genus database with same CATH superfamily
2XWXA 2JHVA 1KSHB 4MAHA 5EMVA 2YOXA 3EJAA 3UAMA 2YETA 1GDFA 3GQQA 4JVFB 3JUAA 4A02A 5F2UA 4EISA 4QI8A 5FJQA 4ALRA 4ALEA 4F38B 4JV6B 4JV8B 5E8FA 4ALTA 5FTZA 2R5OA 5TARB 3T5IA 2BENA 2JHXA 3KYSA 2JHYA 5ACHA 3EIIA 5ACJA 2JHUA 2VTCA 1DS6B 4JVBB 4MAIA 4LN0A 1FSOA 1FT0A 5HNPA 2YOYA 1AJWA 2YOWA 1HH4D 4GOKC 2BEMA 2JHZA 3L15A 1RHOA 5DQ8A 5ACFA 1FSTA 2JHSA 1KSJB 4B5QA 4RE1A 4EISB 5HGUA 4ALSA 2BXWA 4ALCA 4EIRA 2JHTA 1FT3A 3T5GB 5FOHA 5HNOA 5EMWA 1QVYA 4D7UA 2JHWA 1DOAB 5ACIA 4D7VA 5DQEA 4OY6A 5L7KA 5IJUA 4JHPB 4GOJC 5E80A 4GBOA 2JI0A 4ALQA 5TB5B 1KMTA 4OY7A 5AA7A 4OY8A 1KSGB 2LHSA 3RBQA 5ACGA 3ZUDA 4FMRA
chains in the Genus database with same CATH topology
2JHUA 2JHSA 1DS6B 2JHVA 1FSOA 1FT0A 1GDFA 2JI0A 1AJWA 2BXWA 1KMTA 2JHTA 1FT3A 1HH4D 4F38B 2JHZA 1RHOA 2JHYA 2JHXA 1QVYA 1FSTA 2JHWA 1DOAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JHU A;  2JHS A;  1DS6 B;  2JHV A;  1FSO A;  1FT0 A;  1GDF A;  2JI0 A;  1AJW A;  2BXW A;  1KMT A;  2JHT A;  1FT3 A;  1HH4 D;  4F38 B;  2JHZ A;  1RHO A;  2JHY A;  2JHX A;  1QVY A;  1FST A;  2JHW A;  1DOA B; 
#chains in the Genus database with same CATH topology
 2XWX A;  2JHV A;  1KSH B;  4MAH A;  5EMV A;  2YOX A;  3EJA A;  3UAM A;  2YET A;  1GDF A;  3GQQ A;  4JVF B;  3JUA A;  4A02 A;  5F2U A;  4EIS A;  4QI8 A;  5FJQ A;  4ALR A;  4ALE A;  4F38 B;  4JV6 B;  4JV8 B;  5E8F A;  4ALT A;  5FTZ A;  2R5O A;  5TAR B;  3T5I A;  2BEN A;  2JHX A;  3KYS A;  2JHY A;  5ACH A;  3EII A;  5ACJ A;  2JHU A;  2VTC A;  1DS6 B;  4JVB B;  4MAI A;  4LN0 A;  1FSO A;  1FT0 A;  5HNP A;  2YOY A;  1AJW A;  2YOW A;  1HH4 D;  4GOK C;  2BEM A;  2JHZ A;  3L15 A;  1RHO A;  5DQ8 A;  5ACF A;  1FST A;  2JHS A;  1KSJ B;  4B5Q A;  4RE1 A;  4EIS B;  5HGU A;  4ALS A;  2BXW A;  4ALC A;  4EIR A;  2JHT A;  1FT3 A;  3T5G B;  5FOH A;  5HNO A;  5EMW A;  1QVY A;  4D7U A;  2JHW A;  1DOA B;  5ACI A;  4D7V A;  5DQE A;  4OY6 A;  5L7K A;  5IJU A;  4JHP B;  4GOJ C;  5E80 A;  4GBO A;  2JI0 A;  4ALQ A;  5TB5 B;  1KMT A;  4OY7 A;  5AA7 A;  4OY8 A;  1KSG B;  2LHS A;  3RBQ A;  5ACG A;  3ZUD A;  4FMR A; 
#chains in the Genus database with same CATH homology
 2JHU A;  2JHS A;  1DS6 B;  2JHV A;  1FSO A;  1FT0 A;  1GDF A;  2JI0 A;  1AJW A;  2BXW A;  1KMT A;  2JHT A;  1FT3 A;  1HH4 D;  4F38 B;  2JHZ A;  1RHO A;  2JHY A;  2JHX A;  1QVY A;  1FST A;  2JHW A;  1DOA B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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