1FWCB

Klebsiella aerogenes urease, c319a variant at ph 8.5
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
101
structure length
101
Chain Sequence
MIPGEYHVKPGQIALNTGRATCRVVVENHGDRPIQVGSHYHFAEVNPALKFDRQQAAGYRLNIPAGTAVRFEPGQKREVELVAFAGHRAVFGFRGEVMGPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UREASE
publication title Structures of Cys319 variants and acetohydroxamate-inhibited Klebsiella aerogenes urease.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 18
structure length 101
sequence length 101
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 1997-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 1fwcB00
1A5MB 4G7EA 3UBPB 5A6TB 3QGKA 4H9MA 2KAUB 1EJTB 4CEUB 1FWFB 4AC7B 1FWCB 1A5OB 2UBPB 1UBPB 4GY7A 4Z42B 1FWHB 1EJXB 1S3TB 5FSDB 4EPDB 1KRBB 1FWEB 1A5KB 1EJVB 1KRAB 4EP8B 1E9YA 1EJSB 1FWAB 1FWGB 5G4HB 4CEXB 1FWDB 1KRCB 1EJWB 1E9ZA 3LA4A 1EF2B 1IE7B 1FWBB 1FWJB 4EPBB 1A5LB 1EJUB 3QGAA 4GOAA 4EPEB 1FWIB 4UBPB 5FSEB 1EJRB 4G7EB 1A5NB
chains in the Genus database with same CATH superfamily
1A5MB 4G7EA 3UBPB 5A6TB 3QGKA 4H9MA 2KAUB 1EJTB 4CEUB 1FWFB 4AC7B 1FWCB 1A5OB 2UBPB 1UBPB 4GY7A 4Z42B 1FWHB 1EJXB 1S3TB 5FSDB 4EPDB 1KRBB 1FWEB 1A5KB 1EJVB 1KRAB 4EP8B 1E9YA 1EJSB 1FWAB 1FWGB 5G4HB 4CEXB 1FWDB 1KRCB 1EJWB 1E9ZA 3LA4A 1EF2B 1IE7B 1FWBB 1FWJB 4EPBB 1A5LB 1EJUB 3QGAA 4GOAA 4EPEB 1FWIB 4UBPB 5FSEB 1EJRB 4G7EB 1A5NB
chains in the Genus database with same CATH topology
1A5MB 4G7EA 3UBPB 5A6TB 3QGKA 4H9MA 2KAUB 1EJTB 4CEUB 1FWFB 4AC7B 1FWCB 1A5OB 2UBPB 1UBPB 4GY7A 4Z42B 1FWHB 1EJXB 1S3TB 5FSDB 4EPDB 1KRBB 1FWEB 1A5KB 1EJVB 1KRAB 4EP8B 1E9YA 1EJSB 1FWAB 1FWGB 5G4HB 4CEXB 1FWDB 1KRCB 1EJWB 1E9ZA 3LA4A 1EF2B 1IE7B 1FWBB 1FWJB 4EPBB 1A5LB 1EJUB 3QGAA 4GOAA 4EPEB 1FWIB 4UBPB 5FSEB 1EJRB 4G7EB 1A5NB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A5M B;  4G7E A;  3UBP B;  5A6T B;  3QGK A;  4H9M A;  2KAU B;  1EJT B;  4CEU B;  1FWF B;  4AC7 B;  1FWC B;  1A5O B;  2UBP B;  1UBP B;  4GY7 A;  4Z42 B;  1FWH B;  1EJX B;  1S3T B;  5FSD B;  4EPD B;  1KRB B;  1FWE B;  1A5K B;  1EJV B;  1KRA B;  4EP8 B;  1E9Y A;  1EJS B;  1FWA B;  1FWG B;  5G4H B;  4CEX B;  1FWD B;  1KRC B;  1EJW B;  1E9Z A;  3LA4 A;  1EF2 B;  1IE7 B;  1FWB B;  1FWJ B;  4EPB B;  1A5L B;  1EJU B;  3QGA A;  4GOA A;  4EPE B;  1FWI B;  4UBP B;  5FSE B;  1EJR B;  4G7E B;  1A5N B; 
#chains in the Genus database with same CATH topology
 1A5M B;  4G7E A;  3UBP B;  5A6T B;  3QGK A;  4H9M A;  2KAU B;  1EJT B;  4CEU B;  1FWF B;  4AC7 B;  1FWC B;  1A5O B;  2UBP B;  1UBP B;  4GY7 A;  4Z42 B;  1FWH B;  1EJX B;  1S3T B;  5FSD B;  4EPD B;  1KRB B;  1FWE B;  1A5K B;  1EJV B;  1KRA B;  4EP8 B;  1E9Y A;  1EJS B;  1FWA B;  1FWG B;  5G4H B;  4CEX B;  1FWD B;  1KRC B;  1EJW B;  1E9Z A;  3LA4 A;  1EF2 B;  1IE7 B;  1FWB B;  1FWJ B;  4EPB B;  1A5L B;  1EJU B;  3QGA A;  4GOA A;  4EPE B;  1FWI B;  4UBP B;  5FSE B;  1EJR B;  4G7E B;  1A5N B; 
#chains in the Genus database with same CATH homology
 1A5M B;  4G7E A;  3UBP B;  5A6T B;  3QGK A;  4H9M A;  2KAU B;  1EJT B;  4CEU B;  1FWF B;  4AC7 B;  1FWC B;  1A5O B;  2UBP B;  1UBP B;  4GY7 A;  4Z42 B;  1FWH B;  1EJX B;  1S3T B;  5FSD B;  4EPD B;  1KRB B;  1FWE B;  1A5K B;  1EJV B;  1KRA B;  4EP8 B;  1E9Y A;  1EJS B;  1FWA B;  1FWG B;  5G4H B;  4CEX B;  1FWD B;  1KRC B;  1EJW B;  1E9Z A;  3LA4 A;  1EF2 B;  1IE7 B;  1FWB B;  1FWJ B;  4EPB B;  1A5L B;  1EJU B;  3QGA A;  4GOA A;  4EPE B;  1FWI B;  4UBP B;  5FSE B;  1EJR B;  4G7E B;  1A5N B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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