1FWIA

Klebsiella aerogenes urease, h134a variant
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
100
structure length
100
Chain Sequence
MELTPREKDKLLLFTAALVAERRLARGLKLNYPESVALISAFIMEGARDGKSVASLMEEGRHVLTREQVMEGVPEMIPDIQVEATFPDGSKLVTVHNPII
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords UREASE
publication title Characterization of the mononickel metallocenter in H134A mutant urease.
pubmed doi rcsb
source organism Klebsiella aerogenes
total genus 29
structure length 100
sequence length 100
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 1997-04-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00547 Urease_gamma Urease, gamma subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.280.10 Alpha Beta 2-Layer Sandwich Urease; subunit A Urease, gamma-like subunit 1fwiA00
1KRAA 3QGKA 4EPEA 4GOAA 5FSEA 1FWIA 4G7EA 1FWDA 4EPDA 4AC7A 4Z42A 1FWCA 1A5NA 5A6TA 1A5LA 1EJWA 1S3TA 1E9YA 1UBPA 4EP8A 2KAUA 1FWAA 1EJRA 4G7EB 3UBPA 1A5MA 3QGAA 5FSDA 2UBPA 4EPBA 4H9MA 1IE7A 1FWHA 4CEUA 1A5KA 1FWEA 4FURA 1FWFA 2FVHA 4GY7A 1EJSA 1EJXA 1FWJA 1EF2C 1A5OA 1EJTA 1KRBA 1E9ZA 1EJUA 3LA4A 4UBPA 1FWGA 1FWBA 4CEXA 1EJVA 1KRCA 5G4HA
chains in the Genus database with same CATH superfamily
1KRAA 3QGKA 4EPEA 4GOAA 5FSEA 1FWIA 4G7EA 1FWDA 4EPDA 4AC7A 4Z42A 1FWCA 1A5NA 5A6TA 1A5LA 1EJWA 1S3TA 1E9YA 1UBPA 4EP8A 2KAUA 1FWAA 1EJRA 4G7EB 3UBPA 1A5MA 3QGAA 5FSDA 2UBPA 4EPBA 4H9MA 1IE7A 1FWHA 4CEUA 1A5KA 1FWEA 4FURA 1FWFA 2FVHA 4GY7A 1EJSA 1EJXA 1FWJA 1EF2C 1A5OA 1EJTA 1KRBA 1E9ZA 1EJUA 3LA4A 4UBPA 1FWGA 1FWBA 4CEXA 1EJVA 1KRCA 5G4HA
chains in the Genus database with same CATH topology
1KRAA 3QGKA 4EPEA 4GOAA 5FSEA 1FWIA 4G7EA 1FWDA 4EPDA 4AC7A 4Z42A 1FWCA 1A5NA 5A6TA 1A5LA 1EJWA 1S3TA 1E9YA 1UBPA 4EP8A 2KAUA 1FWAA 1EJRA 4G7EB 3UBPA 1A5MA 3QGAA 5FSDA 2UBPA 4EPBA 4H9MA 1IE7A 1FWHA 4CEUA 1A5KA 1FWEA 4FURA 1FWFA 2FVHA 4GY7A 1EJSA 1EJXA 1FWJA 1EF2C 1A5OA 1EJTA 1KRBA 1E9ZA 1EJUA 3LA4A 4UBPA 1FWGA 1FWBA 4CEXA 1EJVA 1KRCA 5G4HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KRA A;  3QGK A;  4EPE A;  4GOA A;  5FSE A;  1FWI A;  4G7E A;  1FWD A;  4EPD A;  4AC7 A;  4Z42 A;  1FWC A;  1A5N A;  5A6T A;  1A5L A;  1EJW A;  1S3T A;  1E9Y A;  1UBP A;  4EP8 A;  2KAU A;  1FWA A;  1EJR A;  4G7E B;  3UBP A;  1A5M A;  3QGA A;  5FSD A;  2UBP A;  4EPB A;  4H9M A;  1IE7 A;  1FWH A;  4CEU A;  1A5K A;  1FWE A;  4FUR A;  1FWF A;  2FVH A;  4GY7 A;  1EJS A;  1EJX A;  1FWJ A;  1EF2 C;  1A5O A;  1EJT A;  1KRB A;  1E9Z A;  1EJU A;  3LA4 A;  4UBP A;  1FWG A;  1FWB A;  4CEX A;  1EJV A;  1KRC A;  5G4H A; 
#chains in the Genus database with same CATH topology
 1KRA A;  3QGK A;  4EPE A;  4GOA A;  5FSE A;  1FWI A;  4G7E A;  1FWD A;  4EPD A;  4AC7 A;  4Z42 A;  1FWC A;  1A5N A;  5A6T A;  1A5L A;  1EJW A;  1S3T A;  1E9Y A;  1UBP A;  4EP8 A;  2KAU A;  1FWA A;  1EJR A;  4G7E B;  3UBP A;  1A5M A;  3QGA A;  5FSD A;  2UBP A;  4EPB A;  4H9M A;  1IE7 A;  1FWH A;  4CEU A;  1A5K A;  1FWE A;  4FUR A;  1FWF A;  2FVH A;  4GY7 A;  1EJS A;  1EJX A;  1FWJ A;  1EF2 C;  1A5O A;  1EJT A;  1KRB A;  1E9Z A;  1EJU A;  3LA4 A;  4UBP A;  1FWG A;  1FWB A;  4CEX A;  1EJV A;  1KRC A;  5G4H A; 
#chains in the Genus database with same CATH homology
 1KRA A;  3QGK A;  4EPE A;  4GOA A;  5FSE A;  1FWI A;  4G7E A;  1FWD A;  4EPD A;  4AC7 A;  4Z42 A;  1FWC A;  1A5N A;  5A6T A;  1A5L A;  1EJW A;  1S3T A;  1E9Y A;  1UBP A;  4EP8 A;  2KAU A;  1FWA A;  1EJR A;  4G7E B;  3UBP A;  1A5M A;  3QGA A;  5FSD A;  2UBP A;  4EPB A;  4H9M A;  1IE7 A;  1FWH A;  4CEU A;  1A5K A;  1FWE A;  4FUR A;  1FWF A;  2FVH A;  4GY7 A;  1EJS A;  1EJX A;  1FWJ A;  1EF2 C;  1A5O A;  1EJT A;  1KRB A;  1E9Z A;  1EJU A;  3LA4 A;  4UBP A;  1FWG A;  1FWB A;  4CEX A;  1EJV A;  1KRC A;  5G4H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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