1FZ3E

Methane monooxygenase hydroxylase, form iii soak at ph 6.2 (0.1 m pipes)
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
166
structure length
166
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN
publication title Crystal structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath) demonstrating geometrical variability at the dinuclear iron active site.
pubmed doi rcsb
total genus 60
structure length 166
sequence length 166
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2000-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz3E01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz3E02
1XVDE 1XU3E 1FZ3E 1FZ6E 1MHYG 1XVBE 1FZHE 1XVCE 1FZ1E 1XU5E 1FYZE 1FZIE 1XMFE 1MMOG 1FZ0E 4GAMC 1FZ4E 1XVEE 1FZ9E 1FZ7E 1XVGE 1MTYG 1FZ5E 1MHZG 1XMHE 1XMGE 1FZ8E 1XVFE 1FZ2E
chains in the Genus database with same CATH superfamily
2RKHA 2RCUA 2MZWB 3OGMB 2OZSA 3LZJA 1MHYG 1P22A 3SQ1A 4B08A 4FK2A 3C6PB 4ADNA 3SCXA 3SPYA 3K2OA 4I9LA 3TJYA 4DTMA 3HGKE 4DTPA 3QEPA 2OYQA 4KHNA 1CLQA 4AKGA 1FYZE 4RG8A 4DTRA 3SI6A 4DTXA 1LDKE 4FJ8A 1WAJA 4KI4A 4JRQA 1MMOG 1FZ0E 3KD1E 4M41A 4FJIA 4HCBA 3L8BA 2JH9A 4M45A 4FJNA 4M3TA 1FZ4E 3TL8B 2DY4A 3LD8A 3KD5E 5IREA 2B8IA 2MW2A 3C95A 4QNDA 2OVPB 3L2OB 5IBKB 3QEWA 3SPZA 2JHPA 4FJ7A 1MHZG 4KHQA 1FZ8E 3C94A 4J2DA 4FJ5A 1FZ2E 2JPNA 4FK0A 4FJJA 2OVRB 4J2BA 3NHGA 3SQ0A 4M3RA 2B7MA 3QEIA 3SUQA 4DTSA 3CQ8A 4JRPA 4AKHA 3SJJA 3TABA 4KHUA 3UO2A 4JS5A 4M3YA 1FPOA 2YB5A 2VIXA 4X5NA 3V7DB 3LDBA 4DTUA 1Q9YA 3SNNA 3RMCA 4FVMA 1Q9XA 2P5OA 4FJLA 4FJMA 4FJKA 2DTUA 4ADOA 4E4BA 3WSOA 3SUPA 4I9QA 2ATQA 2P1NB 1FZ9E 1FZ7E 1JW2A 1FXXA 2P1PB 4AI6A 2JQTA 3RMAA 3OGLB 3N1EA 3SUNA 4FJGA 5H37A 4FJHA 4J2AA 2MMBA 1XU5E 3HGLA 2E32A 1XVFE 4DU3A 3QEXA 4M42A 3E4YA 1XVDE 2VJ5A 3OGKB 4EPHA 3TAEA 3TAFA 2JHAA 1FZ3E 1FZ6E 3C6NB 3NDKA 2HD0A 4AKIA 2P1MB 3L1NA 4DU1A 3QERA 2K5SA 2OZMA 1XVCE 1FZ1E 1N1CA 3NE6A 4M3WA 1XL3C 2PFVA 2LF6A 1FZIE 1FS1A 3QNOA 3CFPA 1XMFE 4RL5A 4IT5A 2VJ4A 2P1OB 4JS4A 4DU4A 3NAEA 4DTNA 3UIQA 1XVEE 3L0MA 5IZ7A 2B1EA 4KHSA 2LF3A 3CFOA 4M3ZA 4X5MA 1MTYG 3CFRA 4KHWA 3E4WA 3RMDA 3SQ2A 4FJ9A 4EYWA 1XMHE 3SUOA 3TAGA 1XMGE 1WAFA 2QXFA 3C6OB 3J27A 2JHCA 4I6JB 3HP9A 3UO3A 3LZIA 1XU3E 4HCCA 2OVQB 1XVBE 4M3UA 3SVIA 2E31A 2H4TA 4DTOA 1FZHE 3QEVA 2PFTA 4FK4A 3MKSB 4QNCA 4ICGC 2DEBA 2FW3A 3S9HA 3HL8A 4EP9A 1IG9A 3RMBA 4M3XA 2P5GA 4GAMC 3SQ4A 4KI6A 1XVGE 4E3SA 3QESA 3NCIA 3LDSA 3RWUA 4RNGA 3NGIA 4J2EA 1IH7A 3BVOA 3N1BA 1FZ5E 3QETA 1NEXB 2P1QB 4FJXA 4KHYA 2FYOA 3QNNA 3J2PA 2JH8A 4DTJA
chains in the Genus database with same CATH topology
2RCUA 2MZWB 3OGMB 2OZSA 3LZJA 1MHYG 1P22A 3SQ1A 4B08A 4FK2A 3C6PB 4ADNA 3SCXA 3SPYA 3K2OA 4I9LA 3TJYA 4DTMA 3HGKE 4DTPA 3QEPA 2OYQA 4KHNA 1CLQA 4AKGA 1FYZE 4RG8A 4DTRA 3SI6A 4DTXA 1LDKE 4FJ8A 1WAJA 4KI4A 4JRQA 1MMOG 1FZ0E 3KD1E 4M41A 4FJIA 4HCBA 3L8BA 2JH9A 4M45A 4FJNA 4M3TA 1FZ4E 3TL8B 2DY4A 3LD8A 3KD5E 5IREA 2B8IA 5IBKB 3C95A 4QNDA 2OVPB 3L2OB 3QEWA 3SPZA 4FJ7A 2JHPA 1MHZG 4KHQA 1FZ8E 3C94A 4J2DA 4FJ5A 1FZ2E 2JPNA 4FK0A 4FJJA 2OVRB 4J2BA 3NHGA 3SQ0A 4M3RA 2B7MA 3QEIA 3SUQA 4DTSA 3CQ8A 4JRPA 4AKHA 3SJJA 3TABA 4KHUA 4JS5A 4M3YA 4M3ZA 2YB5A 2VIXA 4X5NA 3V7DB 3LDBA 4DTUA 1Q9YA 3SNNA 3RMCA 4FVMA 1Q9XA 2P5OA 4FJLA 4FJMA 4FJKA 2DTUA 4ADOA 4E4BA 3WSOA 3SUPA 4I9QA 2ATQA 2P1NB 1FZ9E 1FZ7E 1FXXA 2P1PB 4AI6A 3RMAA 3OGLB 3N1EA 3SUNA 4FJGA 5H37A 4FJHA 4J2AA 2MMBA 1XU5E 3HGLA 2E32A 1XVFE 4DU3A 3QEXA 4M42A 3E4YA 1XVDE 2VJ5A 3OGKB 4EPHA 3TAEA 3TAFA 2JHAA 1FZ3E 1FZ6E 3C6NB 3NDKA 2HD0A 4AKIA 2P1MB 3L1NA 4DU1A 3QERA 2OZMA 1XVCE 1FZ1E 3NE6A 4M3WA 1XL3C 2PFVA 2LF6A 1FZIE 1FS1A 3QNOA 3CFPA 1XMFE 4RL5A 2VJ4A 2P1OB 4JS4A 4DU4A 3NAEA 4DTNA 3UIQA 1XVEE 3L0MA 5IZ7A 2B1EA 4KHSA 2LF3A 3CFOA 4X5MA 1MTYG 3CFRA 4KHWA 3E4WA 3RMDA 3SQ2A 4FJ9A 4EYWA 1XMHE 3SUOA 3TAGA 1XMGE 1WAFA 2QXFA 3C6OB 3J27A 2JHCA 4I6JB 3HP9A 3LZIA 1XU3E 4HCCA 2OVQB 1XVBE 4M3UA 3SVIA 2E31A 2H4TA 4DTOA 1FZHE 3QEVA 2PFTA 4FK4A 3MKSB 4QNCA 2DEBA 2FW3A 3S9HA 3HL8A 4EP9A 1IG9A 3RMBA 4M3XA 2P5GA 4GAMC 3SQ4A 4KI6A 1XVGE 4E3SA 3QESA 3NCIA 3LDSA 3RWUA 4RNGA 3NGIA 4J2EA 1IH7A 3N1BA 1FZ5E 3QETA 1NEXB 2P1QB 4FJXA 4KHYA 2FYOA 3QNNA 3J2PA 2JH8A 4DTJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XVD E;  1XU3 E;  1FZ3 E;  1FZ6 E;  1MHY G;  1XVB E;  1FZH E;  1XVC E;  1FZ1 E;  1XU5 E;  1FYZ E;  1FZI E;  1XMF E;  1MMO G;  1FZ0 E;  4GAM C;  1FZ4 E;  1XVE E;  1FZ9 E;  1FZ7 E;  1XVG E;  1MTY G;  1FZ5 E;  1MHZ G;  1XMH E;  1XMG E;  1FZ8 E;  1XVF E;  1FZ2 E; 
#chains in the Genus database with same CATH topology
 2RKH A;  2RCU A;  2MZW B;  3OGM B;  2OZS A;  3LZJ A;  1MHY G;  1P22 A;  3SQ1 A;  4B08 A;  4FK2 A;  3C6P B;  4ADN A;  3SCX A;  3SPY A;  3K2O A;  4I9L A;  3TJY A;  4DTM A;  3HGK E;  4DTP A;  3QEP A;  2OYQ A;  4KHN A;  1CLQ A;  4AKG A;  1FYZ E;  4RG8 A;  4DTR A;  3SI6 A;  4DTX A;  1LDK E;  4FJ8 A;  1WAJ A;  4KI4 A;  4JRQ A;  1MMO G;  1FZ0 E;  3KD1 E;  4M41 A;  4FJI A;  4HCB A;  3L8B A;  2JH9 A;  4M45 A;  4FJN A;  4M3T A;  1FZ4 E;  3TL8 B;  2DY4 A;  3LD8 A;  3KD5 E;  5IRE A;  2B8I A;  2MW2 A;  3C95 A;  4QND A;  2OVP B;  3L2O B;  5IBK B;  3QEW A;  3SPZ A;  2JHP A;  4FJ7 A;  1MHZ G;  4KHQ A;  1FZ8 E;  3C94 A;  4J2D A;  4FJ5 A;  1FZ2 E;  2JPN A;  4FK0 A;  4FJJ A;  2OVR B;  4J2B A;  3NHG A;  3SQ0 A;  4M3R A;  2B7M A;  3QEI A;  3SUQ A;  4DTS A;  3CQ8 A;  4JRP A;  4AKH A;  3SJJ A;  3TAB A;  4KHU A;  3UO2 A;  4JS5 A;  4M3Y A;  1FPO A;  2YB5 A;  2VIX A;  4X5N A;  3V7D B;  3LDB A;  4DTU A;  1Q9Y A;  3SNN A;  3RMC A;  4FVM A;  1Q9X A;  2P5O A;  4FJL A;  4FJM A;  4FJK A;  2DTU A;  4ADO A;  4E4B A;  3WSO A;  3SUP A;  4I9Q A;  2ATQ A;  2P1N B;  1FZ9 E;  1FZ7 E;  1JW2 A;  1FXX A;  2P1P B;  4AI6 A;  2JQT A;  3RMA A;  3OGL B;  3N1E A;  3SUN A;  4FJG A;  5H37 A;  4FJH A;  4J2A A;  2MMB A;  1XU5 E;  3HGL A;  2E32 A;  1XVF E;  4DU3 A;  3QEX A;  4M42 A;  3E4Y A;  1XVD E;  2VJ5 A;  3OGK B;  4EPH A;  3TAE A;  3TAF A;  2JHA A;  1FZ3 E;  1FZ6 E;  3C6N B;  3NDK A;  2HD0 A;  4AKI A;  2P1M B;  3L1N A;  4DU1 A;  3QER A;  2K5S A;  2OZM A;  1XVC E;  1FZ1 E;  1N1C A;  3NE6 A;  4M3W A;  1XL3 C;  2PFV A;  2LF6 A;  1FZI E;  1FS1 A;  3QNO A;  3CFP A;  1XMF E;  4RL5 A;  4IT5 A;  2VJ4 A;  2P1O B;  4JS4 A;  4DU4 A;  3NAE A;  4DTN A;  3UIQ A;  1XVE E;  3L0M A;  5IZ7 A;  2B1E A;  4KHS A;  2LF3 A;  3CFO A;  4M3Z A;  4X5M A;  1MTY G;  3CFR A;  4KHW A;  3E4W A;  3RMD A;  3SQ2 A;  4FJ9 A;  4EYW A;  1XMH E;  3SUO A;  3TAG A;  1XMG E;  1WAF A;  2QXF A;  3C6O B;  3J27 A;  2JHC A;  4I6J B;  3HP9 A;  3UO3 A;  3LZI A;  1XU3 E;  4HCC A;  2OVQ B;  1XVB E;  4M3U A;  3SVI A;  2E31 A;  2H4T A;  4DTO A;  1FZH E;  3QEV A;  2PFT A;  4FK4 A;  3MKS B;  4QNC A;  4ICG C;  2DEB A;  2FW3 A;  3S9H A;  3HL8 A;  4EP9 A;  1IG9 A;  3RMB A;  4M3X A;  2P5G A;  4GAM C;  3SQ4 A;  4KI6 A;  1XVG E;  4E3S A;  3QES A;  3NCI A;  3LDS A;  3RWU A;  4RNG A;  3NGI A;  4J2E A;  1IH7 A;  3BVO A;  3N1B A;  1FZ5 E;  3QET A;  1NEX B;  2P1Q B;  4FJX A;  4KHY A;  2FYO A;  3QNN A;  3J2P A;  2JH8 A;  4DTJ A; 
#chains in the Genus database with same CATH homology
 2RCU A;  2MZW B;  3OGM B;  2OZS A;  3LZJ A;  1MHY G;  1P22 A;  3SQ1 A;  4B08 A;  4FK2 A;  3C6P B;  4ADN A;  3SCX A;  3SPY A;  3K2O A;  4I9L A;  3TJY A;  4DTM A;  3HGK E;  4DTP A;  3QEP A;  2OYQ A;  4KHN A;  1CLQ A;  4AKG A;  1FYZ E;  4RG8 A;  4DTR A;  3SI6 A;  4DTX A;  1LDK E;  4FJ8 A;  1WAJ A;  4KI4 A;  4JRQ A;  1MMO G;  1FZ0 E;  3KD1 E;  4M41 A;  4FJI A;  4HCB A;  3L8B A;  2JH9 A;  4M45 A;  4FJN A;  4M3T A;  1FZ4 E;  3TL8 B;  2DY4 A;  3LD8 A;  3KD5 E;  5IRE A;  2B8I A;  5IBK B;  3C95 A;  4QND A;  2OVP B;  3L2O B;  3QEW A;  3SPZ A;  4FJ7 A;  2JHP A;  1MHZ G;  4KHQ A;  1FZ8 E;  3C94 A;  4J2D A;  4FJ5 A;  1FZ2 E;  2JPN A;  4FK0 A;  4FJJ A;  2OVR B;  4J2B A;  3NHG A;  3SQ0 A;  4M3R A;  2B7M A;  3QEI A;  3SUQ A;  4DTS A;  3CQ8 A;  4JRP A;  4AKH A;  3SJJ A;  3TAB A;  4KHU A;  4JS5 A;  4M3Y A;  4M3Z A;  2YB5 A;  2VIX A;  4X5N A;  3V7D B;  3LDB A;  4DTU A;  1Q9Y A;  3SNN A;  3RMC A;  4FVM A;  1Q9X A;  2P5O A;  4FJL A;  4FJM A;  4FJK A;  2DTU A;  4ADO A;  4E4B A;  3WSO A;  3SUP A;  4I9Q A;  2ATQ A;  2P1N B;  1FZ9 E;  1FZ7 E;  1FXX A;  2P1P B;  4AI6 A;  3RMA A;  3OGL B;  3N1E A;  3SUN A;  4FJG A;  5H37 A;  4FJH A;  4J2A A;  2MMB A;  1XU5 E;  3HGL A;  2E32 A;  1XVF E;  4DU3 A;  3QEX A;  4M42 A;  3E4Y A;  1XVD E;  2VJ5 A;  3OGK B;  4EPH A;  3TAE A;  3TAF A;  2JHA A;  1FZ3 E;  1FZ6 E;  3C6N B;  3NDK A;  2HD0 A;  4AKI A;  2P1M B;  3L1N A;  4DU1 A;  3QER A;  2OZM A;  1XVC E;  1FZ1 E;  3NE6 A;  4M3W A;  1XL3 C;  2PFV A;  2LF6 A;  1FZI E;  1FS1 A;  3QNO A;  3CFP A;  1XMF E;  4RL5 A;  2VJ4 A;  2P1O B;  4JS4 A;  4DU4 A;  3NAE A;  4DTN A;  3UIQ A;  1XVE E;  3L0M A;  5IZ7 A;  2B1E A;  4KHS A;  2LF3 A;  3CFO A;  4X5M A;  1MTY G;  3CFR A;  4KHW A;  3E4W A;  3RMD A;  3SQ2 A;  4FJ9 A;  4EYW A;  1XMH E;  3SUO A;  3TAG A;  1XMG E;  1WAF A;  2QXF A;  3C6O B;  3J27 A;  2JHC A;  4I6J B;  3HP9 A;  3LZI A;  1XU3 E;  4HCC A;  2OVQ B;  1XVB E;  4M3U A;  3SVI A;  2E31 A;  2H4T A;  4DTO A;  1FZH E;  3QEV A;  2PFT A;  4FK4 A;  3MKS B;  4QNC A;  2DEB A;  2FW3 A;  3S9H A;  3HL8 A;  4EP9 A;  1IG9 A;  3RMB A;  4M3X A;  2P5G A;  4GAM C;  3SQ4 A;  4KI6 A;  1XVG E;  4E3S A;  3QES A;  3NCI A;  3LDS A;  3RWU A;  4RNG A;  3NGI A;  4J2E A;  1IH7 A;  3N1B A;  1FZ5 E;  3QET A;  1NEX B;  2P1Q B;  4FJX A;  4KHY A;  2FYO A;  3QNN A;  3J2P A;  2JH8 A;  4DTJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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