1FZ4E

Methane monooxygenase hydroxylase, form iii soaked at ph 8.5 (0.1 m tris)
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
166
structure length
166
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN
publication title Crystal structures of the soluble methane monooxygenase hydroxylase from Methylococcus capsulatus (Bath) demonstrating geometrical variability at the dinuclear iron active site.
pubmed doi rcsb
total genus 58
structure length 166
sequence length 166
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2000-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz4E01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz4E02
1FZ9E 1FZ8E 1XVGE 1FZIE 1FZ6E 1FYZE 1XVBE 1XMHE 1MTYG 1FZ4E 1XU3E 1XVFE 1FZ3E 1XMGE 1XVEE 1FZ1E 4GAMC 1XMFE 1XVCE 1FZ0E 1XVDE 1MMOG 1FZ2E 1FZHE 1MHZG 1MHYG 1FZ5E 1XU5E 1FZ7E
chains in the Genus database with same CATH superfamily
1FZ9E 1IH7A 2DEBA 3K2OA 4IT5A 1FZ8E 2ATQA 4E3SA 1XVGE 2B1EA 2OZMA 3BVOA 1XVBE 4EP9A 2E31A 4FK0A 3HGLA 4E4BA 3LDSA 3OGLB 3L8BA 3C6PB 3SUOA 4M3TA 1XU3E 1XVFE 4DTNA 3NHGA 3KD1E 3NE6A 4FK2A 1XMGE 3SPZA 2DTUA 2RCUA 3UO3A 3QESA 1FZ1E 2OVPB 3MKSB 3TAEA 4FJLA 4KHQA 2PFVA 3QETA 3UIQA 2JHCA 4J2DA 2K5SA 3SJJA 3WSOA 4DU4A 4J2AA 4M45A 4JRQA 3CFPA 3NGIA 1FZHE 3E4YA 4KHUA 4FJNA 1FZ5E 4DU1A 4KHYA 5IBKB 4X5MA 1FZ7E 4AKGA 4FJJA 3L2OB 3LZJA 3V7DB 2MMBA 1JW2A 2DY4A 1FZIE 1FZ6E 1LDKE 4DTJA 4M3YA 2JHAA 3CFRA 2OVRB 1MTYG 4FJ9A 4FVMA 4JS4A 3TJYA 4J2EA 2P1QB 3UO2A 4EPHA 2FYOA 3C95A 2RKHA 4FJMA 3N1BA 4KI4A 4GAMC 5H37A 1XMFE 5IZ7A 2VJ4A 4I6JB 2FW3A 2MZWB 3QEIA 1FZ0E 1NEXB 1XVDE 3J2PA 4X5NA 4FJGA 3QEVA 4KHNA 3SVIA 4RNGA 3OGMB 3LDBA 3E4WA 3S9HA 4M41A 3TAFA 4M3XA 4KHWA 3QEXA 2OVQB 4AKIA 2HD0A 3TABA 3HGKE 2P1PB 3TL8B 3HL8A 1XMHE 1XL3C 4M3RA 4I9QA 4I9LA 1FZ4E 1FPOA 4DTPA 4ICGC 2P1MB 3SQ1A 1FZ3E 3RMAA 2JPNA 3SNNA 3SUPA 1XVEE 4FJKA 4J2BA 2VIXA 2QXFA 4FJIA 4B08A 3SUNA 1Q9YA 1IG9A 2JH9A 1FXXA 4QNDA 3SCXA 3NAEA 3SI6A 3CQ8A 3SQ4A 3SQ0A 3SPYA 3QNOA 2P5OA 1XVCE 4KHSA 4AI6A 1MMOG 3LZIA 2YB5A 3KD5E 1MHZG 4RG8A 4FJ8A 3RMCA 4AKHA 4EYWA 1XU5E 3QEWA 2OYQA 1WAFA 4FJ7A 3L0MA 4FJ5A 3L1NA 1WAJA 4HCCA 1Q9XA 5IREA 4KI6A 2JH8A 3SUQA 3RMDA 2B8IA 1FYZE 3J27A 1N1CA 4FJXA 3HP9A 2JHPA 3CFOA 2PFTA 2E32A 1P22A 4DTRA 4M3ZA 3TAGA 1FS1A 2MW2A 3NDKA 3QERA 4ADNA 4ADOA 3RMBA 3C6NB 2P1NB 4HCBA 3N1EA 2LF6A 4RL5A 4DU3A 3LD8A 2P1OB 3QNNA 4M3UA 2P5GA 2VJ5A 4DTXA 4DTOA 2LF3A 3OGKB 2OZSA 4FK4A 3C6OB 3NCIA 4M3WA 4QNCA 4DTMA 3RWUA 4JS5A 4M42A 1FZ2E 3QEPA 3C94A 4FJHA 2H4TA 2JQTA 1MHYG 4JRPA 4DTUA 3SQ2A 4DTSA 1CLQA 2B7MA
chains in the Genus database with same CATH topology
1FZ9E 1IH7A 2DEBA 3K2OA 1FZ8E 2ATQA 4E3SA 1XVGE 2B1EA 2OZMA 1XVBE 4EP9A 2E31A 4FK0A 3HGLA 4E4BA 3LDSA 3OGLB 3L8BA 3C6PB 3SUOA 4M3TA 1XU3E 1XVFE 4DTNA 3NHGA 3KD1E 3NE6A 4FK2A 1XMGE 3SPZA 2DTUA 2RCUA 3QESA 1FZ1E 2OVPB 3MKSB 3TAEA 4FJLA 4KHQA 2PFVA 3QETA 3UIQA 2JHCA 4J2DA 3SJJA 3WSOA 4DU4A 4J2AA 4M45A 4JRQA 3CFPA 3NGIA 1FZHE 3E4YA 4KHUA 4FJNA 1FZ5E 4DU1A 4KHYA 5IBKB 4X5MA 1FZ7E 4AKGA 4FJJA 3L2OB 3LZJA 3V7DB 2MMBA 2DY4A 1FZIE 1FZ6E 1LDKE 4DTJA 4M3YA 2JHAA 3CFRA 2OVRB 1MTYG 4FJ9A 4FVMA 4JS4A 3TJYA 4J2EA 2P1QB 4EPHA 2FYOA 3C95A 4FJMA 3N1BA 4KI4A 4GAMC 5H37A 1XMFE 5IZ7A 2VJ4A 4I6JB 2FW3A 2MZWB 3QEIA 1FZ0E 1NEXB 1XVDE 3J2PA 4X5NA 4FJGA 3QEVA 4KHNA 3SVIA 4RNGA 3OGMB 3LDBA 3E4WA 3S9HA 4M41A 3TAFA 4M3XA 4KHWA 3QEXA 2OVQB 4AKIA 2HD0A 3TABA 3HGKE 2P1PB 3TL8B 3HL8A 1XMHE 1XL3C 4M3RA 4I9QA 4I9LA 1FZ4E 4DTPA 2P1MB 3SQ1A 1FZ3E 3RMAA 2JPNA 3SNNA 3SUPA 1XVEE 4FJKA 4J2BA 2VIXA 2QXFA 4FJIA 4B08A 3SUNA 1Q9YA 1IG9A 2JH9A 1FXXA 4QNDA 3SCXA 3NAEA 3SI6A 3CQ8A 3SQ4A 3SQ0A 3SPYA 3QNOA 2P5OA 1XVCE 4KHSA 4AI6A 1MMOG 3LZIA 2YB5A 3KD5E 1MHZG 4RG8A 4FJ8A 3RMCA 4AKHA 4EYWA 1XU5E 3QEWA 2OYQA 1WAFA 4FJ7A 3L0MA 4FJ5A 3L1NA 1WAJA 4HCCA 1Q9XA 5IREA 4KI6A 2JH8A 3SUQA 3RMDA 2B8IA 1FYZE 3J27A 4FJXA 3HP9A 2JHPA 3CFOA 2PFTA 2E32A 1P22A 4DTRA 4M3ZA 3TAGA 1FS1A 3NDKA 3QERA 4ADNA 4ADOA 3RMBA 3C6NB 2P1NB 4HCBA 3N1EA 2LF6A 4RL5A 4DU3A 3LD8A 2P1OB 3QNNA 4M3UA 2P5GA 2VJ5A 4DTXA 4DTOA 2LF3A 3OGKB 2OZSA 4FK4A 3C6OB 3NCIA 4M3WA 4QNCA 4DTMA 3RWUA 4JS5A 4M42A 1FZ2E 3QEPA 3C94A 4FJHA 2H4TA 4JRPA 1MHYG 4DTUA 3SQ2A 1CLQA 4DTSA 2B7MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZ9 E;  1FZ8 E;  1XVG E;  1FZI E;  1FZ6 E;  1FYZ E;  1XVB E;  1XMH E;  1MTY G;  1FZ4 E;  1XU3 E;  1XVF E;  1FZ3 E;  1XMG E;  1XVE E;  1FZ1 E;  4GAM C;  1XMF E;  1XVC E;  1FZ0 E;  1XVD E;  1MMO G;  1FZ2 E;  1FZH E;  1MHZ G;  1MHY G;  1FZ5 E;  1XU5 E;  1FZ7 E; 
#chains in the Genus database with same CATH topology
 1FZ9 E;  1IH7 A;  2DEB A;  3K2O A;  4IT5 A;  1FZ8 E;  2ATQ A;  4E3S A;  1XVG E;  2B1E A;  2OZM A;  3BVO A;  1XVB E;  4EP9 A;  2E31 A;  4FK0 A;  3HGL A;  4E4B A;  3LDS A;  3OGL B;  3L8B A;  3C6P B;  3SUO A;  4M3T A;  1XU3 E;  1XVF E;  4DTN A;  3NHG A;  3KD1 E;  3NE6 A;  4FK2 A;  1XMG E;  3SPZ A;  2DTU A;  2RCU A;  3UO3 A;  3QES A;  1FZ1 E;  2OVP B;  3MKS B;  3TAE A;  4FJL A;  4KHQ A;  2PFV A;  3QET A;  3UIQ A;  2JHC A;  4J2D A;  2K5S A;  3SJJ A;  3WSO A;  4DU4 A;  4J2A A;  4M45 A;  4JRQ A;  3CFP A;  3NGI A;  1FZH E;  3E4Y A;  4KHU A;  4FJN A;  1FZ5 E;  4DU1 A;  4KHY A;  5IBK B;  4X5M A;  1FZ7 E;  4AKG A;  4FJJ A;  3L2O B;  3LZJ A;  3V7D B;  2MMB A;  1JW2 A;  2DY4 A;  1FZI E;  1FZ6 E;  1LDK E;  4DTJ A;  4M3Y A;  2JHA A;  3CFR A;  2OVR B;  1MTY G;  4FJ9 A;  4FVM A;  4JS4 A;  3TJY A;  4J2E A;  2P1Q B;  3UO2 A;  4EPH A;  2FYO A;  3C95 A;  2RKH A;  4FJM A;  3N1B A;  4KI4 A;  4GAM C;  5H37 A;  1XMF E;  5IZ7 A;  2VJ4 A;  4I6J B;  2FW3 A;  2MZW B;  3QEI A;  1FZ0 E;  1NEX B;  1XVD E;  3J2P A;  4X5N A;  4FJG A;  3QEV A;  4KHN A;  3SVI A;  4RNG A;  3OGM B;  3LDB A;  3E4W A;  3S9H A;  4M41 A;  3TAF A;  4M3X A;  4KHW A;  3QEX A;  2OVQ B;  4AKI A;  2HD0 A;  3TAB A;  3HGK E;  2P1P B;  3TL8 B;  3HL8 A;  1XMH E;  1XL3 C;  4M3R A;  4I9Q A;  4I9L A;  1FZ4 E;  1FPO A;  4DTP A;  4ICG C;  2P1M B;  3SQ1 A;  1FZ3 E;  3RMA A;  2JPN A;  3SNN A;  3SUP A;  1XVE E;  4FJK A;  4J2B A;  2VIX A;  2QXF A;  4FJI A;  4B08 A;  3SUN A;  1Q9Y A;  1IG9 A;  2JH9 A;  1FXX A;  4QND A;  3SCX A;  3NAE A;  3SI6 A;  3CQ8 A;  3SQ4 A;  3SQ0 A;  3SPY A;  3QNO A;  2P5O A;  1XVC E;  4KHS A;  4AI6 A;  1MMO G;  3LZI A;  2YB5 A;  3KD5 E;  1MHZ G;  4RG8 A;  4FJ8 A;  3RMC A;  4AKH A;  4EYW A;  1XU5 E;  3QEW A;  2OYQ A;  1WAF A;  4FJ7 A;  3L0M A;  4FJ5 A;  3L1N A;  1WAJ A;  4HCC A;  1Q9X A;  5IRE A;  4KI6 A;  2JH8 A;  3SUQ A;  3RMD A;  2B8I A;  1FYZ E;  3J27 A;  1N1C A;  4FJX A;  3HP9 A;  2JHP A;  3CFO A;  2PFT A;  2E32 A;  1P22 A;  4DTR A;  4M3Z A;  3TAG A;  1FS1 A;  2MW2 A;  3NDK A;  3QER A;  4ADN A;  4ADO A;  3RMB A;  3C6N B;  2P1N B;  4HCB A;  3N1E A;  2LF6 A;  4RL5 A;  4DU3 A;  3LD8 A;  2P1O B;  3QNN A;  4M3U A;  2P5G A;  2VJ5 A;  4DTX A;  4DTO A;  2LF3 A;  3OGK B;  2OZS A;  4FK4 A;  3C6O B;  3NCI A;  4M3W A;  4QNC A;  4DTM A;  3RWU A;  4JS5 A;  4M42 A;  1FZ2 E;  3QEP A;  3C94 A;  4FJH A;  2H4T A;  2JQT A;  1MHY G;  4JRP A;  4DTU A;  3SQ2 A;  4DTS A;  1CLQ A;  2B7M A; 
#chains in the Genus database with same CATH homology
 1FZ9 E;  1IH7 A;  2DEB A;  3K2O A;  1FZ8 E;  2ATQ A;  4E3S A;  1XVG E;  2B1E A;  2OZM A;  1XVB E;  4EP9 A;  2E31 A;  4FK0 A;  3HGL A;  4E4B A;  3LDS A;  3OGL B;  3L8B A;  3C6P B;  3SUO A;  4M3T A;  1XU3 E;  1XVF E;  4DTN A;  3NHG A;  3KD1 E;  3NE6 A;  4FK2 A;  1XMG E;  3SPZ A;  2DTU A;  2RCU A;  3QES A;  1FZ1 E;  2OVP B;  3MKS B;  3TAE A;  4FJL A;  4KHQ A;  2PFV A;  3QET A;  3UIQ A;  2JHC A;  4J2D A;  3SJJ A;  3WSO A;  4DU4 A;  4J2A A;  4M45 A;  4JRQ A;  3CFP A;  3NGI A;  1FZH E;  3E4Y A;  4KHU A;  4FJN A;  1FZ5 E;  4DU1 A;  4KHY A;  5IBK B;  4X5M A;  1FZ7 E;  4AKG A;  4FJJ A;  3L2O B;  3LZJ A;  3V7D B;  2MMB A;  2DY4 A;  1FZI E;  1FZ6 E;  1LDK E;  4DTJ A;  4M3Y A;  2JHA A;  3CFR A;  2OVR B;  1MTY G;  4FJ9 A;  4FVM A;  4JS4 A;  3TJY A;  4J2E A;  2P1Q B;  4EPH A;  2FYO A;  3C95 A;  4FJM A;  3N1B A;  4KI4 A;  4GAM C;  5H37 A;  1XMF E;  5IZ7 A;  2VJ4 A;  4I6J B;  2FW3 A;  2MZW B;  3QEI A;  1FZ0 E;  1NEX B;  1XVD E;  3J2P A;  4X5N A;  4FJG A;  3QEV A;  4KHN A;  3SVI A;  4RNG A;  3OGM B;  3LDB A;  3E4W A;  3S9H A;  4M41 A;  3TAF A;  4M3X A;  4KHW A;  3QEX A;  2OVQ B;  4AKI A;  2HD0 A;  3TAB A;  3HGK E;  2P1P B;  3TL8 B;  3HL8 A;  1XMH E;  1XL3 C;  4M3R A;  4I9Q A;  4I9L A;  1FZ4 E;  4DTP A;  2P1M B;  3SQ1 A;  1FZ3 E;  3RMA A;  2JPN A;  3SNN A;  3SUP A;  1XVE E;  4FJK A;  4J2B A;  2VIX A;  2QXF A;  4FJI A;  4B08 A;  3SUN A;  1Q9Y A;  1IG9 A;  2JH9 A;  1FXX A;  4QND A;  3SCX A;  3NAE A;  3SI6 A;  3CQ8 A;  3SQ4 A;  3SQ0 A;  3SPY A;  3QNO A;  2P5O A;  1XVC E;  4KHS A;  4AI6 A;  1MMO G;  3LZI A;  2YB5 A;  3KD5 E;  1MHZ G;  4RG8 A;  4FJ8 A;  3RMC A;  4AKH A;  4EYW A;  1XU5 E;  3QEW A;  2OYQ A;  1WAF A;  4FJ7 A;  3L0M A;  4FJ5 A;  3L1N A;  1WAJ A;  4HCC A;  1Q9X A;  5IRE A;  4KI6 A;  2JH8 A;  3SUQ A;  3RMD A;  2B8I A;  1FYZ E;  3J27 A;  4FJX A;  3HP9 A;  2JHP A;  3CFO A;  2PFT A;  2E32 A;  1P22 A;  4DTR A;  4M3Z A;  3TAG A;  1FS1 A;  3NDK A;  3QER A;  4ADN A;  4ADO A;  3RMB A;  3C6N B;  2P1N B;  4HCB A;  3N1E A;  2LF6 A;  4RL5 A;  4DU3 A;  3LD8 A;  2P1O B;  3QNN A;  4M3U A;  2P5G A;  2VJ5 A;  4DTX A;  4DTO A;  2LF3 A;  3OGK B;  2OZS A;  4FK4 A;  3C6O B;  3NCI A;  4M3W A;  4QNC A;  4DTM A;  3RWU A;  4JS5 A;  4M42 A;  1FZ2 E;  3QEP A;  3C94 A;  4FJH A;  2H4T A;  4JRP A;  1MHY G;  4DTU A;  3SQ2 A;  1CLQ A;  4DTS A;  2B7M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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