1FZ9E

Methane monooxygenase hydroxylase, form ii cocrystallized with iodoethane
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
167
structure length
167
Chain Sequence
b'KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQSP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Xenon and halogenated alkanes track putative substrate binding cavities in the soluble methane monooxygenase hydroxylase.
pubmed doi rcsb
molecule keywords METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN
molecule tags Oxidoreductase
total genus 60
structure length 167
sequence length 167
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2000-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz9E01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz9E02
1FYZE 1FZHE 1FZ9E 1XVCE 1FZ8E 1XVFE 1XVGE 1XVDE 1FZ1E 1FZ6E 4GAMC 1XMHE 1XU3E 1FZ4E 1FZ3E 1FZ2E 1FZ5E 1XVEE 1XVBE 1MTYG 1FZ7E 1MHYG 1MMOG 1XMFE 1FZIE 1XU5E 1MHZG 1FZ0E 1XMGE
chains in the Genus database with same CATH superfamily
1FXXA 4KI6A 4AKIA 4X5MA 2ATQA 4FK4A 4FJ5A 4KI4A 3RMBA 4FJ8A 4AKGA 2P1OB 1WAJA 3QNOA 1XVGE 3TAGA 1XVDE 2RKHA 3TL8B 3QESA 2HD0A 4JRQA 4RNGA 2K5SA 2DEBA 2JHCA 2PFTA 2MW2A 1XU3E 4HCBA 4JS5A 3SUNA 3N1EA 4KHQA 4FJLA 2B1EA 3RMAA 4M45A 4JRPA 2QXFA 4M41A 2VJ4A 4FJNA 3L0MA 5IREA 3LDBA 3RWUA 4KHNA 4M42A 2DY4A 4FJHA 2OZSA 3LZJA 1MMOG 1XMFE 3N1BA 3NCIA 2P1PB 3WSOA 1XL3C 4JS4A 1MHZG 3NHGA 3SI6A 4M3XA 3L8BA 1XMGE 3OGKB 2E32A 3UO2A 3QEXA 4ADNA 3C6OB 4J2DA 4M3ZA 3SUPA 2E31A 4KHWA 3SPZA 1WAFA 1NEXB 2RCUA 4DTJA 1FZ8E 4DTNA 3TAEA 3SQ2A 1XVFE 3TABA 3RMDA 3MKSB 3HL8A 3QEIA 4AI6A 2JHPA 2P1NB 3OGMB 4FJIA 2B8IA 4FK0A 1FZ2E 3QEWA 3SQ4A 2OZMA 4M3YA 3QETA 3HGLA 4KHSA 4IT5A 4DTXA 1MTYG 5IZ7A 2VIXA 3SPYA 2P1MB 2VJ5A 3SJJA 4RL5A 2B7MA 2JQTA 4FVMA 1XU5E 1FPOA 3HP9A 4J2AA 3QNNA 2MMBA 4M3TA 1FS1A 3C6NB 3SUQA 3UIQA 1FYZE 4FJMA 1FZHE 4KHYA 1FZ9E 2LF6A 4E4BA 4M3WA 4B08A 4X5NA 2LF3A 2PFVA 3E4YA 3K2OA 3HGKE 1FZ1E 4DU4A 3S9HA 3KD5E 4GAMC 1Q9XA 3KD1E 1XMHE 3BVOA 3SVIA 2OVRB 3QEPA 3RMCA 1FZ4E 3CFRA 1FZ3E 3QEVA 4FK2A 4DTOA 4EYWA 1Q9YA 2JHAA 4J2BA 3QERA 3OGLB 4DTUA 2MZWB 3CQ8A 3TAFA 4FJ7A 1IG9A 2JH9A 4AKHA 4FJJA 1P22A 3NGIA 4DTRA 3NE6A 3LZIA 1IH7A 1MHYG 3C6PB 4FJXA 4I6JB 2H4TA 1FZIE 1CLQA 3E4WA 3CFOA 2OVPB 4RG8A 3SNNA 4E3SA 3LD8A 3L2OB 4DTSA 4ICGC 3SQ1A 3J27A 4I9LA 4HCCA 1XVCE 4ADOA 1FZ6E 2FYOA 4EPHA 4DU3A 4FJGA 2YB5A 4M3RA 3SCXA 4KHUA 2P5OA 2P1QB 3V7DB 1N1CA 4FJKA 4DU1A 2OYQA 3NAEA 1LDKE 4QNDA 2P5GA 1FZ5E 5IBKB 3SUOA 4DTPA 1XVEE 3J2PA 2FW3A 3LDSA 1JW2A 4DTMA 3C94A 3CFPA 3L1NA 4QNCA 3UO3A 1XVBE 3TJYA 4FJ9A 5H37A 3C95A 1FZ7E 2OVQB 2JH8A 2JPNA 4I9QA 3SQ0A 1FZ0E 3NDKA 4M3UA 4J2EA 4EP9A 2DTUA
chains in the Genus database with same CATH topology
1FXXA 4KI6A 4AKIA 4X5MA 2ATQA 4FK4A 4FJ5A 4KI4A 3RMBA 4FJ8A 4AKGA 2P1OB 1WAJA 3QNOA 1XVGE 3TAGA 1XVDE 3TL8B 3QESA 2HD0A 4JRQA 4RNGA 2DEBA 2JHCA 2PFTA 1XU3E 4HCBA 4JS5A 3SUNA 3N1EA 4KHQA 4FJLA 2B1EA 3RMAA 4M45A 4JRPA 2QXFA 4M41A 2VJ4A 4FJNA 3L0MA 5IREA 3LDBA 3RWUA 4KHNA 4M42A 2DY4A 4FJHA 2OZSA 3LZJA 1MMOG 1XMFE 3N1BA 3NCIA 2P1PB 3WSOA 1XL3C 4JS4A 1MHZG 3NHGA 3SI6A 4M3XA 3L8BA 1XMGE 3OGKB 2E32A 3QEXA 4ADNA 3C6OB 4J2DA 4M3ZA 3SUPA 2E31A 4KHWA 3SPZA 1WAFA 1NEXB 2RCUA 4DTJA 1FZ8E 4DTNA 3TAEA 3SQ2A 1XVFE 3TABA 3RMDA 3MKSB 3HL8A 3QEIA 4AI6A 2JHPA 2P1NB 3OGMB 4FJIA 2B8IA 4FK0A 1FZ2E 3QEWA 3SQ4A 2OZMA 4M3YA 3QETA 3HGLA 4KHSA 4DTXA 1MTYG 5IZ7A 2VIXA 3SPYA 2P1MB 2VJ5A 3SJJA 4RL5A 2B7MA 4FVMA 1XU5E 4J2AA 3HP9A 3QNNA 2MMBA 4M3TA 3C6NB 1FS1A 3SUQA 3UIQA 1FYZE 4FJMA 1FZHE 4KHYA 1FZ9E 2LF6A 4E4BA 4M3WA 4B08A 4X5NA 2LF3A 2PFVA 3E4YA 3K2OA 3HGKE 1FZ1E 4DU4A 3S9HA 3KD5E 4GAMC 1Q9XA 3KD1E 1XMHE 3SVIA 2OVRB 3QEPA 3RMCA 1FZ4E 3CFRA 1FZ3E 3QEVA 4FK2A 4DTOA 4EYWA 1Q9YA 2JHAA 4J2BA 3QERA 3OGLB 4DTUA 2MZWB 3CQ8A 3TAFA 4FJ7A 1IG9A 2JH9A 4AKHA 4FJJA 1P22A 3NGIA 4DTRA 3NE6A 3LZIA 1IH7A 1MHYG 3C6PB 4FJXA 4I6JB 2H4TA 1FZIE 1CLQA 3E4WA 3CFOA 2OVPB 4RG8A 3SNNA 4E3SA 3LD8A 3L2OB 4DTSA 3SQ1A 3J27A 4I9LA 4HCCA 1XVCE 4ADOA 1FZ6E 2FYOA 4EPHA 4DU3A 4FJGA 2YB5A 4M3RA 3SCXA 4KHUA 2P5OA 2P1QB 3V7DB 4FJKA 4DU1A 2OYQA 3NAEA 1LDKE 4QNDA 2P5GA 1FZ5E 5IBKB 3SUOA 4DTPA 1XVEE 3J2PA 2FW3A 3LDSA 4DTMA 3C94A 3CFPA 3L1NA 4QNCA 4FJ9A 1XVBE 3TJYA 5H37A 3C95A 1FZ7E 2OVQB 2JH8A 2JPNA 4I9QA 3SQ0A 1FZ0E 3NDKA 4M3UA 4J2EA 4EP9A 2DTUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FYZ E;  1FZH E;  1FZ9 E;  1XVC E;  1FZ8 E;  1XVF E;  1XVG E;  1XVD E;  1FZ1 E;  1FZ6 E;  4GAM C;  1XMH E;  1XU3 E;  1FZ4 E;  1FZ3 E;  1FZ2 E;  1FZ5 E;  1XVE E;  1XVB E;  1MTY G;  1FZ7 E;  1MHY G;  1MMO G;  1XMF E;  1FZI E;  1XU5 E;  1MHZ G;  1FZ0 E;  1XMG E; 
#chains in the Genus database with same CATH topology
 1FXX A;  4KI6 A;  4AKI A;  4X5M A;  2ATQ A;  4FK4 A;  4FJ5 A;  4KI4 A;  3RMB A;  4FJ8 A;  4AKG A;  2P1O B;  1WAJ A;  3QNO A;  1XVG E;  3TAG A;  1XVD E;  2RKH A;  3TL8 B;  3QES A;  2HD0 A;  4JRQ A;  4RNG A;  2K5S A;  2DEB A;  2JHC A;  2PFT A;  2MW2 A;  1XU3 E;  4HCB A;  4JS5 A;  3SUN A;  3N1E A;  4KHQ A;  4FJL A;  2B1E A;  3RMA A;  4M45 A;  4JRP A;  2QXF A;  4M41 A;  2VJ4 A;  4FJN A;  3L0M A;  5IRE A;  3LDB A;  3RWU A;  4KHN A;  4M42 A;  2DY4 A;  4FJH A;  2OZS A;  3LZJ A;  1MMO G;  1XMF E;  3N1B A;  3NCI A;  2P1P B;  3WSO A;  1XL3 C;  4JS4 A;  1MHZ G;  3NHG A;  3SI6 A;  4M3X A;  3L8B A;  1XMG E;  3OGK B;  2E32 A;  3UO2 A;  3QEX A;  4ADN A;  3C6O B;  4J2D A;  4M3Z A;  3SUP A;  2E31 A;  4KHW A;  3SPZ A;  1WAF A;  1NEX B;  2RCU A;  4DTJ A;  1FZ8 E;  4DTN A;  3TAE A;  3SQ2 A;  1XVF E;  3TAB A;  3RMD A;  3MKS B;  3HL8 A;  3QEI A;  4AI6 A;  2JHP A;  2P1N B;  3OGM B;  4FJI A;  2B8I A;  4FK0 A;  1FZ2 E;  3QEW A;  3SQ4 A;  2OZM A;  4M3Y A;  3QET A;  3HGL A;  4KHS A;  4IT5 A;  4DTX A;  1MTY G;  5IZ7 A;  2VIX A;  3SPY A;  2P1M B;  2VJ5 A;  3SJJ A;  4RL5 A;  2B7M A;  2JQT A;  4FVM A;  1XU5 E;  1FPO A;  3HP9 A;  4J2A A;  3QNN A;  2MMB A;  4M3T A;  1FS1 A;  3C6N B;  3SUQ A;  3UIQ A;  1FYZ E;  4FJM A;  1FZH E;  4KHY A;  1FZ9 E;  2LF6 A;  4E4B A;  4M3W A;  4B08 A;  4X5N A;  2LF3 A;  2PFV A;  3E4Y A;  3K2O A;  3HGK E;  1FZ1 E;  4DU4 A;  3S9H A;  3KD5 E;  4GAM C;  1Q9X A;  3KD1 E;  1XMH E;  3BVO A;  3SVI A;  2OVR B;  3QEP A;  3RMC A;  1FZ4 E;  3CFR A;  1FZ3 E;  3QEV A;  4FK2 A;  4DTO A;  4EYW A;  1Q9Y A;  2JHA A;  4J2B A;  3QER A;  3OGL B;  4DTU A;  2MZW B;  3CQ8 A;  3TAF A;  4FJ7 A;  1IG9 A;  2JH9 A;  4AKH A;  4FJJ A;  1P22 A;  3NGI A;  4DTR A;  3NE6 A;  3LZI A;  1IH7 A;  1MHY G;  3C6P B;  4FJX A;  4I6J B;  2H4T A;  1FZI E;  1CLQ A;  3E4W A;  3CFO A;  2OVP B;  4RG8 A;  3SNN A;  4E3S A;  3LD8 A;  3L2O B;  4DTS A;  4ICG C;  3SQ1 A;  3J27 A;  4I9L A;  4HCC A;  1XVC E;  4ADO A;  1FZ6 E;  2FYO A;  4EPH A;  4DU3 A;  4FJG A;  2YB5 A;  4M3R A;  3SCX A;  4KHU A;  2P5O A;  2P1Q B;  3V7D B;  1N1C A;  4FJK A;  4DU1 A;  2OYQ A;  3NAE A;  1LDK E;  4QND A;  2P5G A;  1FZ5 E;  5IBK B;  3SUO A;  4DTP A;  1XVE E;  3J2P A;  2FW3 A;  3LDS A;  1JW2 A;  4DTM A;  3C94 A;  3CFP A;  3L1N A;  4QNC A;  3UO3 A;  1XVB E;  3TJY A;  4FJ9 A;  5H37 A;  3C95 A;  1FZ7 E;  2OVQ B;  2JH8 A;  2JPN A;  4I9Q A;  3SQ0 A;  1FZ0 E;  3NDK A;  4M3U A;  4J2E A;  4EP9 A;  2DTU A; 
#chains in the Genus database with same CATH homology
 1FXX A;  4KI6 A;  4AKI A;  4X5M A;  2ATQ A;  4FK4 A;  4FJ5 A;  4KI4 A;  3RMB A;  4FJ8 A;  4AKG A;  2P1O B;  1WAJ A;  3QNO A;  1XVG E;  3TAG A;  1XVD E;  3TL8 B;  3QES A;  2HD0 A;  4JRQ A;  4RNG A;  2DEB A;  2JHC A;  2PFT A;  1XU3 E;  4HCB A;  4JS5 A;  3SUN A;  3N1E A;  4KHQ A;  4FJL A;  2B1E A;  3RMA A;  4M45 A;  4JRP A;  2QXF A;  4M41 A;  2VJ4 A;  4FJN A;  3L0M A;  5IRE A;  3LDB A;  3RWU A;  4KHN A;  4M42 A;  2DY4 A;  4FJH A;  2OZS A;  3LZJ A;  1MMO G;  1XMF E;  3N1B A;  3NCI A;  2P1P B;  3WSO A;  1XL3 C;  4JS4 A;  1MHZ G;  3NHG A;  3SI6 A;  4M3X A;  3L8B A;  1XMG E;  3OGK B;  2E32 A;  3QEX A;  4ADN A;  3C6O B;  4J2D A;  4M3Z A;  3SUP A;  2E31 A;  4KHW A;  3SPZ A;  1WAF A;  1NEX B;  2RCU A;  4DTJ A;  1FZ8 E;  4DTN A;  3TAE A;  3SQ2 A;  1XVF E;  3TAB A;  3RMD A;  3MKS B;  3HL8 A;  3QEI A;  4AI6 A;  2JHP A;  2P1N B;  3OGM B;  4FJI A;  2B8I A;  4FK0 A;  1FZ2 E;  3QEW A;  3SQ4 A;  2OZM A;  4M3Y A;  3QET A;  3HGL A;  4KHS A;  4DTX A;  1MTY G;  5IZ7 A;  2VIX A;  3SPY A;  2P1M B;  2VJ5 A;  3SJJ A;  4RL5 A;  2B7M A;  4FVM A;  1XU5 E;  4J2A A;  3HP9 A;  3QNN A;  2MMB A;  4M3T A;  3C6N B;  1FS1 A;  3SUQ A;  3UIQ A;  1FYZ E;  4FJM A;  1FZH E;  4KHY A;  1FZ9 E;  2LF6 A;  4E4B A;  4M3W A;  4B08 A;  4X5N A;  2LF3 A;  2PFV A;  3E4Y A;  3K2O A;  3HGK E;  1FZ1 E;  4DU4 A;  3S9H A;  3KD5 E;  4GAM C;  1Q9X A;  3KD1 E;  1XMH E;  3SVI A;  2OVR B;  3QEP A;  3RMC A;  1FZ4 E;  3CFR A;  1FZ3 E;  3QEV A;  4FK2 A;  4DTO A;  4EYW A;  1Q9Y A;  2JHA A;  4J2B A;  3QER A;  3OGL B;  4DTU A;  2MZW B;  3CQ8 A;  3TAF A;  4FJ7 A;  1IG9 A;  2JH9 A;  4AKH A;  4FJJ A;  1P22 A;  3NGI A;  4DTR A;  3NE6 A;  3LZI A;  1IH7 A;  1MHY G;  3C6P B;  4FJX A;  4I6J B;  2H4T A;  1FZI E;  1CLQ A;  3E4W A;  3CFO A;  2OVP B;  4RG8 A;  3SNN A;  4E3S A;  3LD8 A;  3L2O B;  4DTS A;  3SQ1 A;  3J27 A;  4I9L A;  4HCC A;  1XVC E;  4ADO A;  1FZ6 E;  2FYO A;  4EPH A;  4DU3 A;  4FJG A;  2YB5 A;  4M3R A;  3SCX A;  4KHU A;  2P5O A;  2P1Q B;  3V7D B;  4FJK A;  4DU1 A;  2OYQ A;  3NAE A;  1LDK E;  4QND A;  2P5G A;  1FZ5 E;  5IBK B;  3SUO A;  4DTP A;  1XVE E;  3J2P A;  2FW3 A;  3LDS A;  4DTM A;  3C94 A;  3CFP A;  3L1N A;  4QNC A;  4FJ9 A;  1XVB E;  3TJY A;  5H37 A;  3C95 A;  1FZ7 E;  2OVQ B;  2JH8 A;  2JPN A;  4I9Q A;  3SQ0 A;  1FZ0 E;  3NDK A;  4M3U A;  4J2E A;  4EP9 A;  2DTU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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