1FZ9E

Methane monooxygenase hydroxylase, form ii cocrystallized with iodoethane
Total Genus 60
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
167
structure length
167
Chain Sequence
KLGIHSNDTRDAWVNKIAQLNTLEKAAEMLKQFRMDHTTPFRNSYELDNDYLWIEAKLEEKVAVLKARAFNEVDFRHKTAFGEDAKSVLDGTVAKMNAAKDKWEAEKIHIGFRQAYKPPIMPVNYFLDGERQLGTRLMELRNLNYYDTPLEELRKQRGVRVVHLQSP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Oxidoreductase
publication title Xenon and halogenated alkanes track putative substrate binding cavities in the soluble methane monooxygenase hydroxylase.
pubmed doi rcsb
molecule keywords METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN
total genus 60
structure length 167
sequence length 167
chains with identical sequence F
ec nomenclature ec 1.14.13.25: Methane monooxygenase (soluble).
pdb deposition date 2000-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
E PF02964 MeMO_Hyd_G Methane monooxygenase, hydrolase gamma chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.10 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz9E01
1.20.1280.30 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 1fz9E02
1FZ0E 1XVCE 1MHYG 1XVEE 1FZ9E 1FYZE 1XMGE 1FZHE 1FZ2E 1XVDE 1XMHE 1XVBE 1XVFE 1XVGE 1FZ5E 4GAMC 1FZ4E 1FZ3E 1FZ7E 1XU3E 1FZ6E 1XMFE 1MMOG 1FZIE 1MHZG 1XU5E 1MTYG 1FZ1E 1FZ8E
chains in the Genus database with same CATH superfamily
2JHAA 3WSOA 3TAFA 2LF3A 3HL8A 2PFVA 2OVRB 3SQ2A 3V7DB 3J27A 1MHYG 2P1QB 2VJ5A 3E4YA 1FZ9E 4DU3A 3RMCA 4FJLA 2H4TA 1FYZE 1XMGE 2E32A 1FZ2E 1XVDE 2YB5A 3SI6A 1LDKE 2QXFA 3QETA 3RMDA 3S9HA 4EPHA 2RCUA 4RNGA 2JQTA 4RG8A 4DTUA 3SUOA 3MKSB 3CFRA 1FZ5E 3LDBA 4GAMC 4M3RA 2HD0A 3C6PB 3HP9A 2OVQB 2PFTA 4DTOA 4J2DA 3NDKA 2MW2A 3C6NB 2P5OA 4QNCA 1FZIE 4M45A 4FJMA 1MHZG 2DTUA 1XU5E 1MTYG 4E4BA 2P1NB 2E31A 1FZ0E 3QEVA 1IG9A 3SUPA 4M3UA 2ATQA 3TABA 4M3XA 1JW2A 2JHPA 3SNNA 4FJXA 4AKIA 4FVMA 5H37A 4KHNA 1P22A 1WAJA 4KI4A 3OGMB 1XMHE 3L8BA 4J2BA 3LZIA 4FJNA 1XVBE 4FK4A 3SQ4A 1XVFE 1XVGE 4FJ5A 4QNDA 3C94A 3HGLA 4X5NA 3NGIA 2B1EA 3N1EA 2FYOA 2DY4A 1Q9YA 3SUNA 4HCCA 3BVOA 4EYWA 4J2EA 3QNOA 2RKHA 4FJHA 2P1MB 4FJ9A 1FZ6E 1FPOA 3NAEA 4M42A 3SCXA 4DTRA 3HGKE 2VJ4A 1WAFA 3OGKB 3QEIA 2JH8A 1NEXB 3QERA 2P5GA 3KD1E 3E4WA 3L1NA 3NE6A 3LDSA 1XL3C 1XVCE 2OVPB 3SVIA 4JS5A 1XVEE 4ICGC 4AKGA 3CFPA 1FZHE 4X5MA 4FJGA 3CQ8A 3UO2A 3TAEA 4FJ7A 4JS4A 3C95A 4DU4A 4J2AA 3OGLB 4I9LA 3KD5E 4DTJA 3UIQA 1FXXA 4KHSA 4M3ZA 4FJKA 4KI6A 3RMAA 2VIXA 4DTMA 3SUQA 1CLQA 3SQ0A 4AKHA 1FZ7E 4JRPA 3RMBA 3K2OA 4HCBA 3SQ1A 4M41A 3RWUA 4FJ8A 2MZWB 2FW3A 5IREA 1FZ1E 4DU1A 4RL5A 2OZSA 3NHGA 3SJJA 4KHYA 2JHCA 4I9QA 2JH9A 2P1OB 3SPZA 4FJJA 1FS1A 4M3WA 2OYQA 5IBKB 4I6JB 3LZJA 2DEBA 4KHUA 4DTSA 4E3SA 4DTNA 4DTXA 3TAGA 3CFOA 3L2OB 4KHWA 2K5SA 4KHQA 3QESA 3SPYA 4ADNA 4AI6A 2MMBA 1IH7A 5IZ7A 4EP9A 2OZMA 3QEXA 2P1PB 4FK0A 4M3TA 4B08A 3TJYA 4FJIA 3J2PA 4IT5A 3UO3A 3NCIA 4FK2A 2LF6A 1FZ4E 1FZ3E 3L0MA 2B8IA 1N1CA 3QNNA 1XU3E 3C6OB 4M3YA 4JRQA 4ADOA 1Q9XA 1XMFE 1MMOG 3QEPA 3LD8A 3N1BA 2B7MA 3QEWA 2JPNA 3TL8B 1FZ8E 4DTPA
chains in the Genus database with same CATH topology
2JHAA 3WSOA 3TAFA 2LF3A 3HL8A 2PFVA 2OVRB 3SQ2A 3V7DB 3J27A 1MHYG 2P1QB 2VJ5A 3E4YA 1FZ9E 4DU3A 3RMCA 4FJLA 2H4TA 1FYZE 1XMGE 2E32A 1FZ2E 1XVDE 2YB5A 3SI6A 1LDKE 2QXFA 3QETA 3RMDA 3S9HA 4EPHA 2RCUA 4RNGA 4RG8A 4DTUA 3SUOA 3MKSB 3CFRA 1FZ5E 3LDBA 4GAMC 4M3RA 2HD0A 3C6PB 3HP9A 2OVQB 2PFTA 4DTOA 4J2DA 3NDKA 3C6NB 2P5OA 4QNCA 1FZIE 4M45A 4FJMA 1MHZG 2DTUA 1XU5E 1MTYG 4E4BA 2P1NB 2E31A 1FZ0E 3QEVA 1IG9A 3SUPA 4M3UA 2ATQA 3TABA 4M3XA 2JHPA 3SNNA 4FJXA 4AKIA 4FVMA 5H37A 4KHNA 1P22A 1WAJA 4KI4A 3OGMB 1XMHE 3L8BA 4J2BA 3LZIA 4FJNA 1XVBE 4FK4A 3SQ4A 1XVFE 1XVGE 4FJ5A 4QNDA 3C94A 3HGLA 4X5NA 3NGIA 2B1EA 3N1EA 2FYOA 2DY4A 1Q9YA 3SUNA 4HCCA 4J2EA 4EYWA 3QNOA 4FJHA 2P1MB 4FJ9A 1FZ6E 3NAEA 4M42A 3SCXA 4DTRA 3HGKE 2VJ4A 1WAFA 3OGKB 3QEIA 2JH8A 1NEXB 3QERA 2P5GA 3KD1E 3E4WA 3L1NA 3NE6A 3LDSA 1XL3C 1XVCE 2OVPB 3SVIA 4JS5A 1XVEE 4AKGA 3CFPA 1FZHE 4X5MA 4FJGA 3CQ8A 3TAEA 4FJ7A 4JS4A 3C95A 4DU4A 4J2AA 3OGLB 4I9LA 3KD5E 4DTJA 3UIQA 1FXXA 4KHSA 4M3ZA 4FJKA 4KI6A 3RMAA 2VIXA 4DTMA 3SUQA 1CLQA 3SQ0A 4AKHA 1FZ7E 4JRPA 3RMBA 3K2OA 4HCBA 3SQ1A 4M41A 3RWUA 4FJ8A 2MZWB 2FW3A 5IREA 1FZ1E 4DU1A 4RL5A 2OZSA 3NHGA 3SJJA 4KHYA 2JHCA 4I9QA 2JH9A 2P1OB 3SPZA 4FJJA 1FS1A 4M3WA 2OYQA 5IBKB 4I6JB 3LZJA 2DEBA 4KHUA 4DTSA 4E3SA 4DTNA 4DTXA 3TAGA 3CFOA 3L2OB 4KHWA 4KHQA 3QESA 3SPYA 4ADNA 4AI6A 2MMBA 1IH7A 5IZ7A 4EP9A 2OZMA 3QEXA 2P1PB 4FK0A 4M3TA 4B08A 3TJYA 4FJIA 3J2PA 4FK2A 3NCIA 2LF6A 1FZ4E 1FZ3E 3L0MA 2B8IA 3QNNA 1XU3E 3C6OB 4M3YA 4JRQA 4ADOA 1Q9XA 1XMFE 1MMOG 3QEPA 3LD8A 3N1BA 2B7MA 3QEWA 2JPNA 3TL8B 1FZ8E 4DTPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FZ0 E;  1XVC E;  1MHY G;  1XVE E;  1FZ9 E;  1FYZ E;  1XMG E;  1FZH E;  1FZ2 E;  1XVD E;  1XMH E;  1XVB E;  1XVF E;  1XVG E;  1FZ5 E;  4GAM C;  1FZ4 E;  1FZ3 E;  1FZ7 E;  1XU3 E;  1FZ6 E;  1XMF E;  1MMO G;  1FZI E;  1MHZ G;  1XU5 E;  1MTY G;  1FZ1 E;  1FZ8 E; 
#chains in the Genus database with same CATH topology
 2JHA A;  3WSO A;  3TAF A;  2LF3 A;  3HL8 A;  2PFV A;  2OVR B;  3SQ2 A;  3V7D B;  3J27 A;  1MHY G;  2P1Q B;  2VJ5 A;  3E4Y A;  1FZ9 E;  4DU3 A;  3RMC A;  4FJL A;  2H4T A;  1FYZ E;  1XMG E;  2E32 A;  1FZ2 E;  1XVD E;  2YB5 A;  3SI6 A;  1LDK E;  2QXF A;  3QET A;  3RMD A;  3S9H A;  4EPH A;  2RCU A;  4RNG A;  2JQT A;  4RG8 A;  4DTU A;  3SUO A;  3MKS B;  3CFR A;  1FZ5 E;  3LDB A;  4GAM C;  4M3R A;  2HD0 A;  3C6P B;  3HP9 A;  2OVQ B;  2PFT A;  4DTO A;  4J2D A;  3NDK A;  2MW2 A;  3C6N B;  2P5O A;  4QNC A;  1FZI E;  4M45 A;  4FJM A;  1MHZ G;  2DTU A;  1XU5 E;  1MTY G;  4E4B A;  2P1N B;  2E31 A;  1FZ0 E;  3QEV A;  1IG9 A;  3SUP A;  4M3U A;  2ATQ A;  3TAB A;  4M3X A;  1JW2 A;  2JHP A;  3SNN A;  4FJX A;  4AKI A;  4FVM A;  5H37 A;  4KHN A;  1P22 A;  1WAJ A;  4KI4 A;  3OGM B;  1XMH E;  3L8B A;  4J2B A;  3LZI A;  4FJN A;  1XVB E;  4FK4 A;  3SQ4 A;  1XVF E;  1XVG E;  4FJ5 A;  4QND A;  3C94 A;  3HGL A;  4X5N A;  3NGI A;  2B1E A;  3N1E A;  2FYO A;  2DY4 A;  1Q9Y A;  3SUN A;  4HCC A;  3BVO A;  4EYW A;  4J2E A;  3QNO A;  2RKH A;  4FJH A;  2P1M B;  4FJ9 A;  1FZ6 E;  1FPO A;  3NAE A;  4M42 A;  3SCX A;  4DTR A;  3HGK E;  2VJ4 A;  1WAF A;  3OGK B;  3QEI A;  2JH8 A;  1NEX B;  3QER A;  2P5G A;  3KD1 E;  3E4W A;  3L1N A;  3NE6 A;  3LDS A;  1XL3 C;  1XVC E;  2OVP B;  3SVI A;  4JS5 A;  1XVE E;  4ICG C;  4AKG A;  3CFP A;  1FZH E;  4X5M A;  4FJG A;  3CQ8 A;  3UO2 A;  3TAE A;  4FJ7 A;  4JS4 A;  3C95 A;  4DU4 A;  4J2A A;  3OGL B;  4I9L A;  3KD5 E;  4DTJ A;  3UIQ A;  1FXX A;  4KHS A;  4M3Z A;  4FJK A;  4KI6 A;  3RMA A;  2VIX A;  4DTM A;  3SUQ A;  1CLQ A;  3SQ0 A;  4AKH A;  1FZ7 E;  4JRP A;  3RMB A;  3K2O A;  4HCB A;  3SQ1 A;  4M41 A;  3RWU A;  4FJ8 A;  2MZW B;  2FW3 A;  5IRE A;  1FZ1 E;  4DU1 A;  4RL5 A;  2OZS A;  3NHG A;  3SJJ A;  4KHY A;  2JHC A;  4I9Q A;  2JH9 A;  2P1O B;  3SPZ A;  4FJJ A;  1FS1 A;  4M3W A;  2OYQ A;  5IBK B;  4I6J B;  3LZJ A;  2DEB A;  4KHU A;  4DTS A;  4E3S A;  4DTN A;  4DTX A;  3TAG A;  3CFO A;  3L2O B;  4KHW A;  2K5S A;  4KHQ A;  3QES A;  3SPY A;  4ADN A;  4AI6 A;  2MMB A;  1IH7 A;  5IZ7 A;  4EP9 A;  2OZM A;  3QEX A;  2P1P B;  4FK0 A;  4M3T A;  4B08 A;  3TJY A;  4FJI A;  3J2P A;  4IT5 A;  3UO3 A;  3NCI A;  4FK2 A;  2LF6 A;  1FZ4 E;  1FZ3 E;  3L0M A;  2B8I A;  1N1C A;  3QNN A;  1XU3 E;  3C6O B;  4M3Y A;  4JRQ A;  4ADO A;  1Q9X A;  1XMF E;  1MMO G;  3QEP A;  3LD8 A;  3N1B A;  2B7M A;  3QEW A;  2JPN A;  3TL8 B;  1FZ8 E;  4DTP A; 
#chains in the Genus database with same CATH homology
 2JHA A;  3WSO A;  3TAF A;  2LF3 A;  3HL8 A;  2PFV A;  2OVR B;  3SQ2 A;  3V7D B;  3J27 A;  1MHY G;  2P1Q B;  2VJ5 A;  3E4Y A;  1FZ9 E;  4DU3 A;  3RMC A;  4FJL A;  2H4T A;  1FYZ E;  1XMG E;  2E32 A;  1FZ2 E;  1XVD E;  2YB5 A;  3SI6 A;  1LDK E;  2QXF A;  3QET A;  3RMD A;  3S9H A;  4EPH A;  2RCU A;  4RNG A;  4RG8 A;  4DTU A;  3SUO A;  3MKS B;  3CFR A;  1FZ5 E;  3LDB A;  4GAM C;  4M3R A;  2HD0 A;  3C6P B;  3HP9 A;  2OVQ B;  2PFT A;  4DTO A;  4J2D A;  3NDK A;  3C6N B;  2P5O A;  4QNC A;  1FZI E;  4M45 A;  4FJM A;  1MHZ G;  2DTU A;  1XU5 E;  1MTY G;  4E4B A;  2P1N B;  2E31 A;  1FZ0 E;  3QEV A;  1IG9 A;  3SUP A;  4M3U A;  2ATQ A;  3TAB A;  4M3X A;  2JHP A;  3SNN A;  4FJX A;  4AKI A;  4FVM A;  5H37 A;  4KHN A;  1P22 A;  1WAJ A;  4KI4 A;  3OGM B;  1XMH E;  3L8B A;  4J2B A;  3LZI A;  4FJN A;  1XVB E;  4FK4 A;  3SQ4 A;  1XVF E;  1XVG E;  4FJ5 A;  4QND A;  3C94 A;  3HGL A;  4X5N A;  3NGI A;  2B1E A;  3N1E A;  2FYO A;  2DY4 A;  1Q9Y A;  3SUN A;  4HCC A;  4J2E A;  4EYW A;  3QNO A;  4FJH A;  2P1M B;  4FJ9 A;  1FZ6 E;  3NAE A;  4M42 A;  3SCX A;  4DTR A;  3HGK E;  2VJ4 A;  1WAF A;  3OGK B;  3QEI A;  2JH8 A;  1NEX B;  3QER A;  2P5G A;  3KD1 E;  3E4W A;  3L1N A;  3NE6 A;  3LDS A;  1XL3 C;  1XVC E;  2OVP B;  3SVI A;  4JS5 A;  1XVE E;  4AKG A;  3CFP A;  1FZH E;  4X5M A;  4FJG A;  3CQ8 A;  3TAE A;  4FJ7 A;  4JS4 A;  3C95 A;  4DU4 A;  4J2A A;  3OGL B;  4I9L A;  3KD5 E;  4DTJ A;  3UIQ A;  1FXX A;  4KHS A;  4M3Z A;  4FJK A;  4KI6 A;  3RMA A;  2VIX A;  4DTM A;  3SUQ A;  1CLQ A;  3SQ0 A;  4AKH A;  1FZ7 E;  4JRP A;  3RMB A;  3K2O A;  4HCB A;  3SQ1 A;  4M41 A;  3RWU A;  4FJ8 A;  2MZW B;  2FW3 A;  5IRE A;  1FZ1 E;  4DU1 A;  4RL5 A;  2OZS A;  3NHG A;  3SJJ A;  4KHY A;  2JHC A;  4I9Q A;  2JH9 A;  2P1O B;  3SPZ A;  4FJJ A;  1FS1 A;  4M3W A;  2OYQ A;  5IBK B;  4I6J B;  3LZJ A;  2DEB A;  4KHU A;  4DTS A;  4E3S A;  4DTN A;  4DTX A;  3TAG A;  3CFO A;  3L2O B;  4KHW A;  4KHQ A;  3QES A;  3SPY A;  4ADN A;  4AI6 A;  2MMB A;  1IH7 A;  5IZ7 A;  4EP9 A;  2OZM A;  3QEX A;  2P1P B;  4FK0 A;  4M3T A;  4B08 A;  3TJY A;  4FJI A;  3J2P A;  4FK2 A;  3NCI A;  2LF6 A;  1FZ4 E;  1FZ3 E;  3L0M A;  2B8I A;  3QNN A;  1XU3 E;  3C6O B;  4M3Y A;  4JRQ A;  4ADO A;  1Q9X A;  1XMF E;  1MMO G;  3QEP A;  3LD8 A;  3N1B A;  2B7M A;  3QEW A;  2JPN A;  3TL8 B;  1FZ8 E;  4DTP A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...