1G57A

Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
209
structure length
205
Chain Sequence
LLSSFGTPFERVENALAALREGRGVMVLDENEGDMIFPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAAEGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDLMTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Isomerase
molecule keywords 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE
publication title Crystal structure of 3,4-dihydroxy-2-butanone 4-phosphate synthase of riboflavin biosynthesis.
pubmed doi rcsb
source organism Escherichia coli
total genus 72
structure length 205
sequence length 209
chains with identical sequence B
ec nomenclature ec 4.1.99.12: 3,4-dihydroxy-2-butanone-4-phosphate synthase.
pdb deposition date 2000-10-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00926 DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.870.10 Alpha Beta Alpha-Beta Complex DHBP synthase DHBP synthase 1g57A00
3LRJA 4I14A 4FFJA 1TKUA 3H07A 4P8EA 1K4PA 2EQAA 1JCUA 4E1BA 4P6DA 2RISA 1KK9A 1TKSA 3LQUA 4P8JA 4P6CA 1K4OA 1SNNA 3MIOA 1K49A 3L7VA 4P6PA 1IEZA 1PVYA 2RIUA 2MX1A 1K7JA 3AJEA 3MK5A 1K4IA 1HRUA 3LS6A 4P77A 1PVWA 1G58A 3MGZA 1G57A 1K4LA
chains in the Genus database with same CATH superfamily
3TSUA 3LRJA 4I14A 4FFJA 1TKUA 3TTCA 3H07A 4P8EA 1K4PA 2EQAA 1JCUA 4E1BA 3TTDA 4P6DA 2RISA 1KK9A 3TSQA 3VF2A 1TKSA 3LQUA 3VTHA 3TTFA 4P8JA 3VF4A 4P6CA 3VTIA 1K4OA 3VEWA 3VETA 1SNNA 3VEZA 3VENA 3MIOA 1K49A 3L7VA 4P6PA 1IEZA 1PVYA 2RIUA 2MX1A 3VEOA 3VEXA 3VESA 1K7JA 3AJEA 3MK5A 3VERA 1K4IA 1HRUA 3LS6A 4P77A 1PVWA 1G58A 3MGZA 3TSPA 1G57A 1K4LA
chains in the Genus database with same CATH topology
3TSUA 3LRJA 4I14A 4FFJA 1TKUA 3TTCA 3H07A 4P8EA 1K4PA 2EQAA 1JCUA 4E1BA 3TTDA 4P6DA 2RISA 1KK9A 3TSQA 3VF2A 1TKSA 3LQUA 3VTHA 3TTFA 4P8JA 3VF4A 4P6CA 3VTIA 1K4OA 3VEWA 3VETA 1SNNA 3VEZA 3VENA 3MIOA 1K49A 3L7VA 4P6PA 1IEZA 1PVYA 2RIUA 2MX1A 3VEOA 3VEXA 3VESA 1K7JA 3AJEA 3MK5A 3VERA 1K4IA 1HRUA 3LS6A 4P77A 1PVWA 1G58A 3MGZA 3TSPA 1G57A 1K4LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LRJ A;  4I14 A;  4FFJ A;  1TKU A;  3H07 A;  4P8E A;  1K4P A;  2EQA A;  1JCU A;  4E1B A;  4P6D A;  2RIS A;  1KK9 A;  1TKS A;  3LQU A;  4P8J A;  4P6C A;  1K4O A;  1SNN A;  3MIO A;  1K49 A;  3L7V A;  4P6P A;  1IEZ A;  1PVY A;  2RIU A;  2MX1 A;  1K7J A;  3AJE A;  3MK5 A;  1K4I A;  1HRU A;  3LS6 A;  4P77 A;  1PVW A;  1G58 A;  3MGZ A;  1G57 A;  1K4L A; 
#chains in the Genus database with same CATH topology
 3TSU A;  3LRJ A;  4I14 A;  4FFJ A;  1TKU A;  3TTC A;  3H07 A;  4P8E A;  1K4P A;  2EQA A;  1JCU A;  4E1B A;  3TTD A;  4P6D A;  2RIS A;  1KK9 A;  3TSQ A;  3VF2 A;  1TKS A;  3LQU A;  3VTH A;  3TTF A;  4P8J A;  3VF4 A;  4P6C A;  3VTI A;  1K4O A;  3VEW A;  3VET A;  1SNN A;  3VEZ A;  3VEN A;  3MIO A;  1K49 A;  3L7V A;  4P6P A;  1IEZ A;  1PVY A;  2RIU A;  2MX1 A;  3VEO A;  3VEX A;  3VES A;  1K7J A;  3AJE A;  3MK5 A;  3VER A;  1K4I A;  1HRU A;  3LS6 A;  4P77 A;  1PVW A;  1G58 A;  3MGZ A;  3TSP A;  1G57 A;  1K4L A; 
#chains in the Genus database with same CATH homology
 3TSU A;  3LRJ A;  4I14 A;  4FFJ A;  1TKU A;  3TTC A;  3H07 A;  4P8E A;  1K4P A;  2EQA A;  1JCU A;  4E1B A;  3TTD A;  4P6D A;  2RIS A;  1KK9 A;  3TSQ A;  3VF2 A;  1TKS A;  3LQU A;  3VTH A;  3TTF A;  4P8J A;  3VF4 A;  4P6C A;  3VTI A;  1K4O A;  3VEW A;  3VET A;  1SNN A;  3VEZ A;  3VEN A;  3MIO A;  1K49 A;  3L7V A;  4P6P A;  1IEZ A;  1PVY A;  2RIU A;  2MX1 A;  3VEO A;  3VEX A;  3VES A;  1K7J A;  3AJE A;  3MK5 A;  3VER A;  1K4I A;  1HRU A;  3LS6 A;  4P77 A;  1PVW A;  1G58 A;  3MGZ A;  3TSP A;  1G57 A;  1K4L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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