1G6MA

Nmr solution structure of cbt2
Total Genus 7
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
7
sequence length
62
structure length
62
Chain Sequence
LECHNQQSSQTPTTTGCSGGENNCYKKEWRDNRGYRTERGCGCPSVKKGIGINCCTTDRCNN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords SHORT NEUROTOXIN 1
publication title NMR Solution structure of CBT2
rcsb
total genus 7
structure length 62
sequence length 62
ec nomenclature
pdb deposition date 2000-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1g6mA00
1DRSA 1QKEA 2LA1A 1CXOA 1CDTA 1I02A 1NYSA 2MJYA 1LXGA 2HLRA 2UX2A 1CVOA 2J8BA 2MHYA 3NEQA 1M9ZA 1CDSA 1JBDA 3FEVA 2QJBC 1ZADA 2QJ9C 1NORA 1TGXA 1ES7B 2PJYB 2LCRA 2JQPA 1KBTA 2PJYC 2L03A 3EVSC 1CCQA 1FRAA 1KC4A 4P7UA 1QM7A 2MFAA 1FFJA 2CDXA 4BDTB 1JGKA 2FD6U 4QTIU 1NEAA 1KBAA 5IMYC 2BTXA 1IQ9A 1FSCA 1W6BA 6EBXA 4FAOE 1LXHA 2H7ZA 1G6MA 1NTXA 1PLOA 1V6PA 1CREA 1HC9A 1CXNA 1IDHA 1NYUA 1KBSA 1COEA 4AEAA 1CDQA 1CB9A 1FSSB 1UG4A 1IJCA 1REWC 1MAHF 4OM5A 1TXBA 1KTZB 2L5SA 4HQPF 1KL8A 1JE9A 1IDIA 3NDSA 1TXAA 4EY8B 1ONJA 1B41B 1ERGA 1FASA 2H62C 1CODA 3PLCA 2HLQA 2MUOA 2QC1A 2UWRA 4IYEA 2MUPA 2N99A 4UY2C 5DZ5A 5IMTD 1ABTA 1ERAA 1LX5B 1HAAA 1LJZA 2CTXA 2H7ZB 3ERAA 1IDLA 3QB4B 1NXBA 3KFDI 1HOYA 3HH7A 1CRFA 1BXPA 1MR6A 4OM4A 2VLWA 5DU1A 2ERAA 1XT3A 1IK8A 4BIKB 1KU6B 5DO6A 1FF4A 2OFSA 1TFSA 1F94A 2QJAC 2H64B 3KFDE 2I9BE 2GOOB 2H62D 4RUDA 3LAQU 2H64C 1H0JA 1CHVS 1IDGA 2GOOC 2ABXA 2H8UA 1L4WA 3U73U 1F8UB 1LSIA 2CRSA 2MJ0A 4FAOC 1CTXA 2MJ4A 1HAJA 3VTSA 1S4YA 4XJJA 2X8BB 1BTEA 4ZQYA 3EBXA 2H5FA 1VB0A 2NBTA 1RGJA 2BHIA 1HC9B 3NH7A 1QKDA 4DO8A 1YWHA 3U74U 4LFTA 1NTNA 1KXIA 2CCXA 1CDRA 5EBXA 3BT1U 1RL5A 3BT2U 2JVEA 2CRTA 1IKCA 1KFHA 2K3GA 1KS6A
chains in the Genus database with same CATH superfamily
1DRSA 1QKEA 2LA1A 1CXOA 1CDTA 1I02A 1NYSA 2MJYA 1LXGA 2HLRA 2UX2A 1CVOA 2J8BA 2MHYA 3NEQA 1M9ZA 1CDSA 1JBDA 3FEVA 2QJBC 1ZADA 2QJ9C 1NORA 1TGXA 1ES7B 2PJYB 2LCRA 2JQPA 1KBTA 2PJYC 2L03A 3EVSC 1CCQA 1FRAA 1KC4A 4P7UA 1QM7A 2MFAA 1FFJA 2CDXA 4BDTB 1JGKA 2FD6U 4QTIU 4KSNA 1NEAA 1KBAA 5IMYC 2BTXA 1IQ9A 1FSCA 1W6BA 6EBXA 4FAOE 1LXHA 2H7ZA 1G6MA 1NTXA 1PLOA 1V6PA 1CREA 1HC9A 1CXNA 1IDHA 1NYUA 1KBSA 1COEA 4AEAA 1CDQA 1CB9A 1FSSB 1UG4A 1IJCA 1REWC 1MAHF 4OM5A 1TXBA 1KTZB 2L5SA 4HQPF 1KL8A 1JE9A 1IDIA 3NDSA 1TXAA 4EY8B 1ONJA 1B41B 1ERGA 1FASA 2H62C 1CODA 3PLCA 2HLQA 2MUOA 2QC1A 2UWRA 4IYEA 2MUPA 2N99A 4UY2C 5DZ5A 5IMTD 1ABTA 1ERAA 1LX5B 1HAAA 1LJZA 2CTXA 2H7ZB 3ERAA 1IDLA 3QB4B 1NXBA 3KFDI 1HOYA 3HH7A 1CRFA 1BXPA 1MR6A 4OM4A 2VLWA 5DU1A 2ERAA 1XT3A 1IK8A 4BIKB 1KU6B 5DO6A 1FF4A 2OFSA 1TFSA 1F94A 2QJAC 2H64B 3KFDE 2I9BE 2GOOB 2H62D 4RUDA 3LAQU 2H64C 1H0JA 1CHVS 1IDGA 2GOOC 2ABXA 2H8UA 1L4WA 3U73U 1F8UB 1LSIA 2CRSA 2MJ0A 4FAOC 1CTXA 2MJ4A 1HAJA 3VTSA 1S4YA 4XJJA 2X8BB 1BTEA 4ZQYA 3EBXA 2H5FA 1VB0A 2NBTA 1RGJA 2BHIA 1HC9B 3NH7A 1QKDA 4DO8A 1YWHA 3U74U 4LFTA 1NTNA 1KXIA 2CCXA 1CDRA 5EBXA 3BT1U 1RL5A 3BT2U 2JVEA 2CRTA 1IKCA 1KFHA 2K3GA 1KS6A
chains in the Genus database with same CATH topology
1DRSA 1QKEA 2LA1A 1CXOA 1CDTA 1I02A 1NYSA 2MJYA 1LXGA 2HLRA 2UX2A 1CVOA 2J8BA 2MHYA 3NEQA 1M9ZA 1CDSA 1JBDA 3FEVA 2QJBC 1ZADA 2QJ9C 1NORA 1TGXA 1ES7B 2PJYB 2LCRA 2JQPA 1KBTA 2PJYC 2L03A 3EVSC 1CCQA 1FRAA 1KC4A 4P7UA 1QM7A 2MFAA 1FFJA 2CDXA 4BDTB 1JGKA 2FD6U 4QTIU 4KSNA 1NEAA 1KBAA 5IMYC 2BTXA 1IQ9A 1FSCA 1W6BA 6EBXA 4FAOE 1LXHA 2H7ZA 1G6MA 1NTXA 1PLOA 1V6PA 1CREA 1HC9A 1CXNA 1IDHA 1NYUA 1KBSA 1COEA 4AEAA 1CDQA 1CB9A 1FSSB 1UG4A 1IJCA 1REWC 1MAHF 4OM5A 1TXBA 1KTZB 2L5SA 4HQPF 1KL8A 1JE9A 1IDIA 3NDSA 1TXAA 4EY8B 1ONJA 1B41B 1ERGA 1FASA 2H62C 1CODA 3PLCA 2HLQA 2MUOA 2QC1A 2UWRA 4IYEA 2MUPA 2N99A 4UY2C 5DZ5A 5IMTD 1ABTA 1ERAA 1LX5B 1HAAA 1LJZA 2CTXA 2H7ZB 3ERAA 1IDLA 3QB4B 1NXBA 3KFDI 1HOYA 3HH7A 1CRFA 1BXPA 1MR6A 4OM4A 2VLWA 5DU1A 2ERAA 1XT3A 1IK8A 4BIKB 1KU6B 5DO6A 1FF4A 2OFSA 1TFSA 1F94A 2QJAC 2H64B 3KFDE 2I9BE 2GOOB 2H62D 4RUDA 3LAQU 2H64C 1H0JA 1CHVS 1IDGA 2GOOC 2ABXA 2H8UA 1L4WA 3U73U 1F8UB 1LSIA 2CRSA 2MJ0A 4FAOC 1CTXA 2MJ4A 1HAJA 3VTSA 1S4YA 4XJJA 2X8BB 1BTEA 4ZQYA 3EBXA 2H5FA 1VB0A 2NBTA 1RGJA 2BHIA 1HC9B 3NH7A 1QKDA 4DO8A 1YWHA 3U74U 4LFTA 1NTNA 1KXIA 2CCXA 1CDRA 5EBXA 3BT1U 1RL5A 3BT2U 2JVEA 2CRTA 1IKCA 1KFHA 2K3GA 1KS6A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DRS A;  1QKE A;  2LA1 A;  1CXO A;  1CDT A;  1I02 A;  1NYS A;  2MJY A;  1LXG A;  2HLR A;  2UX2 A;  1CVO A;  2J8B A;  2MHY A;  3NEQ A;  1M9Z A;  1CDS A;  1JBD A;  3FEV A;  2QJB C;  1ZAD A;  2QJ9 C;  1NOR A;  1TGX A;  1ES7 B;  2PJY B;  2LCR A;  2JQP A;  1KBT A;  2PJY C;  2L03 A;  3EVS C;  1CCQ A;  1FRA A;  1KC4 A;  4P7U A;  1QM7 A;  2MFA A;  1FFJ A;  2CDX A;  4BDT B;  1JGK A;  2FD6 U;  4QTI U;  1NEA A;  1KBA A;  5IMY C;  2BTX A;  1IQ9 A;  1FSC A;  1W6B A;  6EBX A;  4FAO E;  1LXH A;  2H7Z A;  1G6M A;  1NTX A;  1PLO A;  1V6P A;  1CRE A;  1HC9 A;  1CXN A;  1IDH A;  1NYU A;  1KBS A;  1COE A;  4AEA A;  1CDQ A;  1CB9 A;  1FSS B;  1UG4 A;  1IJC A;  1REW C;  1MAH F;  4OM5 A;  1TXB A;  1KTZ B;  2L5S A;  4HQP F;  1KL8 A;  1JE9 A;  1IDI A;  3NDS A;  1TXA A;  4EY8 B;  1ONJ A;  1B41 B;  1ERG A;  1FAS A;  2H62 C;  1COD A;  3PLC A;  2HLQ A;  2MUO A;  2QC1 A;  2UWR A;  4IYE A;  2MUP A;  2N99 A;  4UY2 C;  5DZ5 A;  5IMT D;  1ABT A;  1ERA A;  1LX5 B;  1HAA A;  1LJZ A;  2CTX A;  2H7Z B;  3ERA A;  1IDL A;  3QB4 B;  1NXB A;  3KFD I;  1HOY A;  3HH7 A;  1CRF A;  1BXP A;  1MR6 A;  4OM4 A;  2VLW A;  5DU1 A;  2ERA A;  1XT3 A;  1IK8 A;  4BIK B;  1KU6 B;  5DO6 A;  1FF4 A;  2OFS A;  1TFS A;  1F94 A;  2QJA C;  2H64 B;  3KFD E;  2I9B E;  2GOO B;  2H62 D;  4RUD A;  3LAQ U;  2H64 C;  1H0J A;  1CHV S;  1IDG A;  2GOO C;  2ABX A;  2H8U A;  1L4W A;  3U73 U;  1F8U B;  1LSI A;  2CRS A;  2MJ0 A;  4FAO C;  1CTX A;  2MJ4 A;  1HAJ A;  3VTS A;  1S4Y A;  4XJJ A;  2X8B B;  1BTE A;  4ZQY A;  3EBX A;  2H5F A;  1VB0 A;  2NBT A;  1RGJ A;  2BHI A;  1HC9 B;  3NH7 A;  1QKD A;  4DO8 A;  1YWH A;  3U74 U;  4LFT A;  1NTN A;  1KXI A;  2CCX A;  1CDR A;  5EBX A;  3BT1 U;  1RL5 A;  3BT2 U;  2JVE A;  2CRT A;  1IKC A;  1KFH A;  2K3G A;  1KS6 A; 
#chains in the Genus database with same CATH topology
 1DRS A;  1QKE A;  2LA1 A;  1CXO A;  1CDT A;  1I02 A;  1NYS A;  2MJY A;  1LXG A;  2HLR A;  2UX2 A;  1CVO A;  2J8B A;  2MHY A;  3NEQ A;  1M9Z A;  1CDS A;  1JBD A;  3FEV A;  2QJB C;  1ZAD A;  2QJ9 C;  1NOR A;  1TGX A;  1ES7 B;  2PJY B;  2LCR A;  2JQP A;  1KBT A;  2PJY C;  2L03 A;  3EVS C;  1CCQ A;  1FRA A;  1KC4 A;  4P7U A;  1QM7 A;  2MFA A;  1FFJ A;  2CDX A;  4BDT B;  1JGK A;  2FD6 U;  4QTI U;  4KSN A;  1NEA A;  1KBA A;  5IMY C;  2BTX A;  1IQ9 A;  1FSC A;  1W6B A;  6EBX A;  4FAO E;  1LXH A;  2H7Z A;  1G6M A;  1NTX A;  1PLO A;  1V6P A;  1CRE A;  1HC9 A;  1CXN A;  1IDH A;  1NYU A;  1KBS A;  1COE A;  4AEA A;  1CDQ A;  1CB9 A;  1FSS B;  1UG4 A;  1IJC A;  1REW C;  1MAH F;  4OM5 A;  1TXB A;  1KTZ B;  2L5S A;  4HQP F;  1KL8 A;  1JE9 A;  1IDI A;  3NDS A;  1TXA A;  4EY8 B;  1ONJ A;  1B41 B;  1ERG A;  1FAS A;  2H62 C;  1COD A;  3PLC A;  2HLQ A;  2MUO A;  2QC1 A;  2UWR A;  4IYE A;  2MUP A;  2N99 A;  4UY2 C;  5DZ5 A;  5IMT D;  1ABT A;  1ERA A;  1LX5 B;  1HAA A;  1LJZ A;  2CTX A;  2H7Z B;  3ERA A;  1IDL A;  3QB4 B;  1NXB A;  3KFD I;  1HOY A;  3HH7 A;  1CRF A;  1BXP A;  1MR6 A;  4OM4 A;  2VLW A;  5DU1 A;  2ERA A;  1XT3 A;  1IK8 A;  4BIK B;  1KU6 B;  5DO6 A;  1FF4 A;  2OFS A;  1TFS A;  1F94 A;  2QJA C;  2H64 B;  3KFD E;  2I9B E;  2GOO B;  2H62 D;  4RUD A;  3LAQ U;  2H64 C;  1H0J A;  1CHV S;  1IDG A;  2GOO C;  2ABX A;  2H8U A;  1L4W A;  3U73 U;  1F8U B;  1LSI A;  2CRS A;  2MJ0 A;  4FAO C;  1CTX A;  2MJ4 A;  1HAJ A;  3VTS A;  1S4Y A;  4XJJ A;  2X8B B;  1BTE A;  4ZQY A;  3EBX A;  2H5F A;  1VB0 A;  2NBT A;  1RGJ A;  2BHI A;  1HC9 B;  3NH7 A;  1QKD A;  4DO8 A;  1YWH A;  3U74 U;  4LFT A;  1NTN A;  1KXI A;  2CCX A;  1CDR A;  5EBX A;  3BT1 U;  1RL5 A;  3BT2 U;  2JVE A;  2CRT A;  1IKC A;  1KFH A;  2K3G A;  1KS6 A; 
#chains in the Genus database with same CATH homology
 1DRS A;  1QKE A;  2LA1 A;  1CXO A;  1CDT A;  1I02 A;  1NYS A;  2MJY A;  1LXG A;  2HLR A;  2UX2 A;  1CVO A;  2J8B A;  2MHY A;  3NEQ A;  1M9Z A;  1CDS A;  1JBD A;  3FEV A;  2QJB C;  1ZAD A;  2QJ9 C;  1NOR A;  1TGX A;  1ES7 B;  2PJY B;  2LCR A;  2JQP A;  1KBT A;  2PJY C;  2L03 A;  3EVS C;  1CCQ A;  1FRA A;  1KC4 A;  4P7U A;  1QM7 A;  2MFA A;  1FFJ A;  2CDX A;  4BDT B;  1JGK A;  2FD6 U;  4QTI U;  4KSN A;  1NEA A;  1KBA A;  5IMY C;  2BTX A;  1IQ9 A;  1FSC A;  1W6B A;  6EBX A;  4FAO E;  1LXH A;  2H7Z A;  1G6M A;  1NTX A;  1PLO A;  1V6P A;  1CRE A;  1HC9 A;  1CXN A;  1IDH A;  1NYU A;  1KBS A;  1COE A;  4AEA A;  1CDQ A;  1CB9 A;  1FSS B;  1UG4 A;  1IJC A;  1REW C;  1MAH F;  4OM5 A;  1TXB A;  1KTZ B;  2L5S A;  4HQP F;  1KL8 A;  1JE9 A;  1IDI A;  3NDS A;  1TXA A;  4EY8 B;  1ONJ A;  1B41 B;  1ERG A;  1FAS A;  2H62 C;  1COD A;  3PLC A;  2HLQ A;  2MUO A;  2QC1 A;  2UWR A;  4IYE A;  2MUP A;  2N99 A;  4UY2 C;  5DZ5 A;  5IMT D;  1ABT A;  1ERA A;  1LX5 B;  1HAA A;  1LJZ A;  2CTX A;  2H7Z B;  3ERA A;  1IDL A;  3QB4 B;  1NXB A;  3KFD I;  1HOY A;  3HH7 A;  1CRF A;  1BXP A;  1MR6 A;  4OM4 A;  2VLW A;  5DU1 A;  2ERA A;  1XT3 A;  1IK8 A;  4BIK B;  1KU6 B;  5DO6 A;  1FF4 A;  2OFS A;  1TFS A;  1F94 A;  2QJA C;  2H64 B;  3KFD E;  2I9B E;  2GOO B;  2H62 D;  4RUD A;  3LAQ U;  2H64 C;  1H0J A;  1CHV S;  1IDG A;  2GOO C;  2ABX A;  2H8U A;  1L4W A;  3U73 U;  1F8U B;  1LSI A;  2CRS A;  2MJ0 A;  4FAO C;  1CTX A;  2MJ4 A;  1HAJ A;  3VTS A;  1S4Y A;  4XJJ A;  2X8B B;  1BTE A;  4ZQY A;  3EBX A;  2H5F A;  1VB0 A;  2NBT A;  1RGJ A;  2BHI A;  1HC9 B;  3NH7 A;  1QKD A;  4DO8 A;  1YWH A;  3U74 U;  4LFT A;  1NTN A;  1KXI A;  2CCX A;  1CDR A;  5EBX A;  3BT1 U;  1RL5 A;  3BT2 U;  2JVE A;  2CRT A;  1IKC A;  1KFH A;  2K3G A;  1KS6 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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