1G6SA

Structure of epsp synthase liganded with shikimate-3-phosphate and glyphosate
Total Genus 158
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
158
sequence length
427
structure length
427
Chain Sequence
MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords EPSP SYNTHASE
publication title Interaction of the herbicide glyphosate with its target enzyme 5-enolpyruvylshikimate 3-phosphate synthase in atomic detail.
pubmed doi rcsb
source organism Escherichia coli
total genus 158
structure length 427
sequence length 427
ec nomenclature ec 2.5.1.19: 3-phosphoshikimate 1-carboxyvinyltransferase.
pdb deposition date 2000-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 1g6sA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 1g6sA01
1NAWA 1RYWA 4ZNDA 2O0BA 4E7EA 2QFQA 4E7CA 2Z2CA 3SWAA 3KR6A 3RMTA 3TI2A 3KQAA 4GFPA 3SG1A 1RF5A 3FK1A 2RL1A 1Q36A 2QFSA 3R38A 1G6TA 1EJCA 3SPBA 1P88A 4E7DA 4EIIA 1YBGA 3SWEA 1A2NA 2QFTA 3SWDA 2O0ZA 4E7BA 1UAEA 3FJZA 2O0DA 2GG6A 2BJBA 2PQ9A 2GG4A 3SU9A 3V4TA 1EYNA 2GGAA 4E7GA 2O15A 4EGRA 5BS5A 2O0XA 2YVWA 3NVSA 4FQDA 4E7FA 3SWIA 2O0EA 2AA9A 1X8TA 3ZH4A 2GGDA 1DLGA 1X8RA 2QFUA 3ISSA 3ZH3A 2PQBA 1MI4A 2AAYA 1EJDA 3VCYA 3FK0A 3FJXA 3LTHA 1Q3GA 3SWQA 5U4HA 3SWGA 2RL2A 1G6SA 2PQDA 3ROIA 5BQ2A 1RF6A 2PQCA 3TR1A 1P89A 4R7UA 3UPKA 5BUFA 1RF4A 4N3PA 3SLHA 3KQJA 3V5VA
chains in the Genus database with same CATH superfamily
1NAWA 1RYWA 4ZNDA 2O0BA 3TV1A 4E7EA 2QFQA 4CLQA 4E7CA 2Z2CA 3SWAA 3KR6A 1QMIA 3RMTA 3TI2A 3KQAA 4GFPA 3SG1A 1RF5A 3FK1A 2RL1A 1Q36A 2QFSA 3KGDA 3R38A 1G6TA 3TW3A 1EJCA 3SPBA 1P88A 4E7DA 3TUXA 4EIIA 1YBGA 3SWEA 1A2NA 2QFTA 3SWDA 2O0ZA 4O89A 4E7BA 1UAEA 3FJZA 2O0DA 3TUTA 2GG6A 2BJBA 2PQ9A 2GG4A 3SU9A 3V4TA 1EYNA 2GGAA 4E7GA 2O15A 4EGRA 5BS5A 2O0XA 2YVWA 3NVSA 4FQDA 4E7FA 3SWIA 2O0EA 2AA9A 3PQVA 1X8TA 3ZH4A 2GGDA 1DLGA 1X8RA 2QFUA 3ISSA 2PQBA 1MI4A 3ZH3A 2AAYA 1EJDA 3VCYA 3FK0A 3FJXA 3LTHA 1Q3GA 1QMHA 3SWQA 5U4HA 3SWGA 2RL2A 1G6SA 2PQDA 3ROIA 5BQ2A 1RF6A 2PQCA 3TR1A 1P89A 4R7UA 3UPKA 5BUFA 1RF4A 4N3PA 4O8JA 3SLHA 3KQJA 3V5VA
chains in the Genus database with same CATH topology
1NAWA 1RYWA 4ZNDA 2O0BA 4E7EA 2QFQA 4E7CA 2Z2CA 3SWAA 3KR6A 3RMTA 3TI2A 3KQAA 4GFPA 3SG1A 1RF5A 3FK1A 2RL1A 1Q36A 2QFSA 3R38A 1G6TA 1EJCA 3SPBA 1P88A 4E7DA 4EIIA 1YBGA 3SWEA 1A2NA 2QFTA 3SWDA 2O0ZA 4E7BA 1UAEA 3FJZA 2O0DA 2GG6A 2BJBA 2PQ9A 2GG4A 3SU9A 3V4TA 1EYNA 2GGAA 4E7GA 2O15A 4EGRA 5BS5A 2O0XA 2YVWA 3NVSA 4FQDA 4E7FA 3SWIA 2O0EA 2AA9A 1X8TA 3ZH4A 2GGDA 1DLGA 1X8RA 2QFUA 3ISSA 3ZH3A 2PQBA 1MI4A 2AAYA 1EJDA 3VCYA 3FK0A 3FJXA 3LTHA 1Q3GA 3SWQA 5U4HA 3SWGA 2RL2A 1G6SA 2PQDA 3ROIA 5BQ2A 1RF6A 2PQCA 3TR1A 1P89A 4R7UA 3UPKA 5BUFA 1RF4A 4N3PA 3SLHA 3KQJA 3V5VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NAW A;  1RYW A;  4ZND A;  2O0B A;  4E7E A;  2QFQ A;  4E7C A;  2Z2C A;  3SWA A;  3KR6 A;  3RMT A;  3TI2 A;  3KQA A;  4GFP A;  3SG1 A;  1RF5 A;  3FK1 A;  2RL1 A;  1Q36 A;  2QFS A;  3R38 A;  1G6T A;  1EJC A;  3SPB A;  1P88 A;  4E7D A;  4EII A;  1YBG A;  3SWE A;  1A2N A;  2QFT A;  3SWD A;  2O0Z A;  4E7B A;  1UAE A;  3FJZ A;  2O0D A;  2GG6 A;  2BJB A;  2PQ9 A;  2GG4 A;  3SU9 A;  3V4T A;  1EYN A;  2GGA A;  4E7G A;  2O15 A;  4EGR A;  5BS5 A;  2O0X A;  2YVW A;  3NVS A;  4FQD A;  4E7F A;  3SWI A;  2O0E A;  2AA9 A;  1X8T A;  3ZH4 A;  2GGD A;  1DLG A;  1X8R A;  2QFU A;  3ISS A;  3ZH3 A;  2PQB A;  1MI4 A;  2AAY A;  1EJD A;  3VCY A;  3FK0 A;  3FJX A;  3LTH A;  1Q3G A;  3SWQ A;  5U4H A;  3SWG A;  2RL2 A;  1G6S A;  2PQD A;  3ROI A;  5BQ2 A;  1RF6 A;  2PQC A;  3TR1 A;  1P89 A;  4R7U A;  3UPK A;  5BUF A;  1RF4 A;  4N3P A;  3SLH A;  3KQJ A;  3V5V A; 
#chains in the Genus database with same CATH topology
 1NAW A;  1RYW A;  4ZND A;  2O0B A;  3TV1 A;  4E7E A;  2QFQ A;  4CLQ A;  4E7C A;  2Z2C A;  3SWA A;  3KR6 A;  1QMI A;  3RMT A;  3TI2 A;  3KQA A;  4GFP A;  3SG1 A;  1RF5 A;  3FK1 A;  2RL1 A;  1Q36 A;  2QFS A;  3KGD A;  3R38 A;  1G6T A;  3TW3 A;  1EJC A;  3SPB A;  1P88 A;  4E7D A;  3TUX A;  4EII A;  1YBG A;  3SWE A;  1A2N A;  2QFT A;  3SWD A;  2O0Z A;  4O89 A;  4E7B A;  1UAE A;  3FJZ A;  2O0D A;  3TUT A;  2GG6 A;  2BJB A;  2PQ9 A;  2GG4 A;  3SU9 A;  3V4T A;  1EYN A;  2GGA A;  4E7G A;  2O15 A;  4EGR A;  5BS5 A;  2O0X A;  2YVW A;  3NVS A;  4FQD A;  4E7F A;  3SWI A;  2O0E A;  2AA9 A;  3PQV A;  1X8T A;  3ZH4 A;  2GGD A;  1DLG A;  1X8R A;  2QFU A;  3ISS A;  2PQB A;  1MI4 A;  3ZH3 A;  2AAY A;  1EJD A;  3VCY A;  3FK0 A;  3FJX A;  3LTH A;  1Q3G A;  1QMH A;  3SWQ A;  5U4H A;  3SWG A;  2RL2 A;  1G6S A;  2PQD A;  3ROI A;  5BQ2 A;  1RF6 A;  2PQC A;  3TR1 A;  1P89 A;  4R7U A;  3UPK A;  5BUF A;  1RF4 A;  4N3P A;  4O8J A;  3SLH A;  3KQJ A;  3V5V A; 
#chains in the Genus database with same CATH homology
 1NAW A;  1RYW A;  4ZND A;  2O0B A;  4E7E A;  2QFQ A;  4E7C A;  2Z2C A;  3SWA A;  3KR6 A;  3RMT A;  3TI2 A;  3KQA A;  4GFP A;  3SG1 A;  1RF5 A;  3FK1 A;  2RL1 A;  1Q36 A;  2QFS A;  3R38 A;  1G6T A;  1EJC A;  3SPB A;  1P88 A;  4E7D A;  4EII A;  1YBG A;  3SWE A;  1A2N A;  2QFT A;  3SWD A;  2O0Z A;  4E7B A;  1UAE A;  3FJZ A;  2O0D A;  2GG6 A;  2BJB A;  2PQ9 A;  2GG4 A;  3SU9 A;  3V4T A;  1EYN A;  2GGA A;  4E7G A;  2O15 A;  4EGR A;  5BS5 A;  2O0X A;  2YVW A;  3NVS A;  4FQD A;  4E7F A;  3SWI A;  2O0E A;  2AA9 A;  1X8T A;  3ZH4 A;  2GGD A;  1DLG A;  1X8R A;  2QFU A;  3ISS A;  3ZH3 A;  2PQB A;  1MI4 A;  2AAY A;  1EJD A;  3VCY A;  3FK0 A;  3FJX A;  3LTH A;  1Q3G A;  3SWQ A;  5U4H A;  3SWG A;  2RL2 A;  1G6S A;  2PQD A;  3ROI A;  5BQ2 A;  1RF6 A;  2PQC A;  3TR1 A;  1P89 A;  4R7U A;  3UPK A;  5BUF A;  1RF4 A;  4N3P A;  3SLH A;  3KQJ A;  3V5V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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